Literature DB >> 21581447

Benzyl N'-(1-methyl-1H-indol-3-yl-methyl-idene)hydrazinecarbodithio-ate.

Hamid Khaledi1, Hapipah Mohd Ali, Seik Weng Ng.   

Abstract

The N'-(1-methyl-1H-indol-3-ylmethyl-idene)hydrazine-carbo-dithio-ate portion of the title mol-ecule, C(18)H(17)N(3)S(2), is nearly planar; this unit and the phenyl ring subtend an angle of 112.9 (2)° at the methyl-ene C atom.

Entities:  

Year:  2008        PMID: 21581447      PMCID: PMC2959791          DOI: 10.1107/S1600536808039330

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of S-benzyl N-1-(1H-indol-3-ylmethyl­idenehydrazinecarbodithio­ate, see: Khaledi et al. (2008 ▶).

Experimental

Crystal data

C18H17N3S2 M = 339.47 Monoclinic, a = 10.6111 (4) Å b = 6.1134 (2) Å c = 13.4961 (4) Å β = 111.934 (2)° V = 812.12 (5) Å3 Z = 2 Mo Kα radiation μ = 0.33 mm−1 T = 100 (2) K 0.30 × 0.10 × 0.02 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.908, T max = 0.993 5513 measured reflections 3277 independent reflections 2802 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.087 S = 1.03 3277 reflections 213 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.28 e Å−3 Absolute structure: Flack (1983 ▶), 1261 Friedel pairs Flack parameter: 0.01 (8) Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808039330/tk2334sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808039330/tk2334Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H17N3S2F000 = 356
Mr = 339.47Dx = 1.388 Mg m3
Monoclinic, P21Mo Kα radiation λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 1721 reflections
a = 10.6111 (4) Åθ = 3.1–27.1º
b = 6.1134 (2) ŵ = 0.33 mm1
c = 13.4961 (4) ÅT = 100 (2) K
β = 111.934 (2)ºPlate, yellow
V = 812.12 (5) Å30.30 × 0.10 × 0.02 mm
Z = 2
Bruker SMART APEX diffractometer3277 independent reflections
Radiation source: fine-focus sealed tube2802 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.027
T = 100(2) Kθmax = 27.5º
ω scansθmin = 1.6º
Absorption correction: Multi-scan(SADABS; Sheldrick, 1996)h = −13→13
Tmin = 0.908, Tmax = 0.993k = −6→7
5513 measured reflectionsl = −17→17
Refinement on F2Hydrogen site location: constr
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.037  w = 1/[σ2(Fo2) + (0.0366P)2 + 0.212P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.087(Δ/σ)max = 0.001
S = 1.03Δρmax = 0.28 e Å3
3277 reflectionsΔρmin = −0.28 e Å3
213 parametersExtinction correction: none
2 restraintsAbsolute structure: Flack (1983), 1261 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.01 (8)
Secondary atom site location: difference Fourier map
xyzUiso*/Ueq
S10.33191 (7)0.50000 (12)0.67816 (5)0.01960 (16)
S20.48123 (7)0.86601 (13)0.61270 (5)0.02642 (18)
N10.2902 (2)0.7662 (4)1.16590 (16)0.0202 (5)
N20.3791 (2)0.7502 (4)0.85695 (16)0.0181 (5)
N30.4323 (2)0.8477 (4)0.78860 (16)0.0183 (5)
H30.480 (3)0.967 (3)0.796 (2)0.035 (9)*
C10.2337 (3)0.5789 (5)1.1079 (2)0.0178 (6)
C20.1584 (3)0.4147 (5)1.1303 (2)0.0215 (6)
H20.14220.41431.19500.026*
C30.1075 (3)0.2515 (5)1.0548 (2)0.0236 (6)
H3A0.05310.13891.06680.028*
C40.1347 (3)0.2496 (5)0.9610 (2)0.0215 (6)
H40.09830.13540.91060.026*
C50.2133 (3)0.4101 (4)0.9399 (2)0.0193 (6)
H50.23260.40510.87670.023*
C60.2637 (3)0.5795 (4)1.01374 (19)0.0166 (6)
C70.2743 (3)0.8324 (5)1.2645 (2)0.0261 (7)
H7A0.31620.97611.28670.039*
H7B0.31860.72491.32060.039*
H7C0.17740.84051.25240.039*
C80.3524 (3)0.8815 (5)1.11224 (19)0.0201 (6)
H80.39811.01661.13570.024*
C90.3409 (3)0.7767 (4)1.01840 (19)0.0168 (6)
C100.3932 (2)0.8586 (5)0.94249 (18)0.0166 (5)
H100.43920.99520.95510.020*
C110.4177 (3)0.7519 (5)0.6953 (2)0.0197 (6)
C120.3161 (3)0.4207 (5)0.54473 (19)0.0229 (6)
H12A0.38400.50190.52510.028*
H12B0.33660.26270.54450.028*
C130.1765 (3)0.4642 (5)0.46213 (19)0.0192 (6)
C140.1145 (3)0.6657 (5)0.4536 (2)0.0220 (6)
H140.16060.78000.50100.026*
C15−0.0137 (3)0.7043 (5)0.3773 (2)0.0258 (7)
H15−0.05500.84380.37260.031*
C16−0.0816 (3)0.5379 (6)0.3078 (2)0.0295 (8)
H16−0.16930.56380.25520.035*
C17−0.0220 (3)0.3353 (5)0.3150 (2)0.0280 (7)
H17−0.06860.22120.26770.034*
C180.1073 (3)0.2984 (5)0.3919 (2)0.0240 (7)
H180.14860.15890.39660.029*
U11U22U33U12U13U23
S10.0229 (3)0.0209 (4)0.0149 (3)−0.0023 (3)0.0070 (2)0.0006 (3)
S20.0317 (4)0.0286 (4)0.0252 (3)−0.0013 (4)0.0179 (3)0.0058 (3)
N10.0225 (12)0.0243 (13)0.0158 (10)0.0007 (10)0.0094 (9)−0.0026 (9)
N20.0191 (11)0.0187 (13)0.0176 (10)−0.0022 (10)0.0082 (9)0.0036 (9)
N30.0232 (12)0.0166 (13)0.0178 (10)−0.0018 (10)0.0109 (9)0.0023 (10)
C10.0179 (14)0.0190 (15)0.0159 (12)0.0050 (12)0.0056 (11)0.0017 (11)
C20.0210 (14)0.0248 (17)0.0208 (13)0.0049 (12)0.0103 (11)0.0051 (11)
C30.0217 (14)0.0195 (16)0.0298 (14)−0.0007 (13)0.0097 (12)0.0052 (12)
C40.0225 (14)0.0195 (15)0.0208 (13)−0.0007 (12)0.0062 (11)−0.0012 (12)
C50.0192 (13)0.0213 (16)0.0178 (12)0.0031 (12)0.0072 (11)0.0025 (11)
C60.0145 (13)0.0187 (15)0.0169 (12)0.0041 (11)0.0063 (10)0.0031 (11)
C70.0369 (17)0.0297 (18)0.0160 (12)0.0016 (14)0.0148 (12)−0.0056 (12)
C80.0173 (13)0.0194 (15)0.0216 (12)0.0007 (13)0.0049 (10)−0.0003 (12)
C90.0156 (13)0.0182 (15)0.0157 (12)0.0003 (11)0.0048 (10)0.0016 (11)
C100.0180 (13)0.0136 (13)0.0168 (11)−0.0014 (12)0.0049 (10)−0.0002 (11)
C110.0176 (13)0.0225 (16)0.0185 (12)0.0038 (12)0.0061 (11)0.0040 (11)
C120.0298 (15)0.0225 (16)0.0182 (12)0.0035 (12)0.0109 (12)−0.0016 (11)
C130.0230 (13)0.0242 (17)0.0130 (11)−0.0008 (12)0.0099 (10)0.0005 (11)
C140.0230 (15)0.0266 (17)0.0157 (12)−0.0016 (12)0.0064 (11)−0.0021 (11)
C150.0281 (16)0.0256 (17)0.0254 (14)0.0045 (13)0.0122 (12)0.0060 (13)
C160.0244 (15)0.044 (2)0.0176 (12)−0.0029 (14)0.0055 (11)0.0064 (13)
C170.0353 (17)0.0324 (19)0.0169 (12)−0.0157 (15)0.0105 (12)−0.0049 (13)
C180.0366 (17)0.0196 (16)0.0202 (13)−0.0043 (13)0.0159 (13)−0.0011 (11)
S1—C111.759 (3)C7—H7A0.9800
S1—C121.811 (3)C7—H7B0.9800
S2—C111.657 (3)C7—H7C0.9800
N1—C81.347 (3)C8—C91.383 (4)
N1—C11.390 (4)C8—H80.9500
N1—C71.460 (3)C9—C101.426 (4)
N2—C101.290 (3)C10—H100.9500
N2—N31.384 (3)C12—C131.508 (4)
N3—C111.345 (3)C12—H12A0.9900
N3—H30.875 (10)C12—H12B0.9900
C1—C21.386 (4)C13—C141.381 (4)
C1—C61.420 (4)C13—C181.394 (4)
C2—C31.384 (4)C14—C151.386 (4)
C2—H20.9500C14—H140.9500
C3—C41.400 (4)C15—C161.389 (4)
C3—H3A0.9500C15—H150.9500
C4—C51.385 (4)C16—C171.378 (5)
C4—H40.9500C16—H160.9500
C5—C61.398 (4)C17—C181.395 (4)
C5—H50.9500C17—H170.9500
C6—C91.445 (4)C18—H180.9500
C11—S1—C12102.48 (13)C9—C8—H8124.6
C8—N1—C1108.8 (2)C8—C9—C10124.8 (3)
C8—N1—C7126.3 (3)C8—C9—C6106.3 (2)
C1—N1—C7124.7 (2)C10—C9—C6128.9 (2)
C10—N2—N3115.8 (2)N2—C10—C9121.1 (3)
C11—N3—N2120.3 (2)N2—C10—H10119.5
C11—N3—H3109 (2)C9—C10—H10119.5
N2—N3—H3131 (2)N3—C11—S2120.9 (2)
C2—C1—N1129.5 (2)N3—C11—S1112.2 (2)
C2—C1—C6122.6 (3)S2—C11—S1126.94 (17)
N1—C1—C6108.0 (2)C13—C12—S1112.87 (19)
C3—C2—C1117.4 (2)C13—C12—H12A109.0
C3—C2—H2121.3S1—C12—H12A109.0
C1—C2—H2121.3C13—C12—H12B109.0
C2—C3—C4121.1 (3)S1—C12—H12B109.0
C2—C3—H3A119.4H12A—C12—H12B107.8
C4—C3—H3A119.4C14—C13—C18118.6 (2)
C5—C4—C3121.6 (3)C14—C13—C12121.6 (2)
C5—C4—H4119.2C18—C13—C12119.8 (3)
C3—C4—H4119.2C13—C14—C15121.2 (3)
C4—C5—C6118.6 (2)C13—C14—H14119.4
C4—C5—H5120.7C15—C14—H14119.4
C6—C5—H5120.7C14—C15—C16119.7 (3)
C5—C6—C1118.8 (2)C14—C15—H15120.2
C5—C6—C9135.2 (2)C16—C15—H15120.2
C1—C6—C9106.0 (2)C17—C16—C15120.2 (3)
N1—C7—H7A109.5C17—C16—H16119.9
N1—C7—H7B109.5C15—C16—H16119.9
H7A—C7—H7B109.5C16—C17—C18119.7 (3)
N1—C7—H7C109.5C16—C17—H17120.2
H7A—C7—H7C109.5C18—C17—H17120.2
H7B—C7—H7C109.5C13—C18—C17120.7 (3)
N1—C8—C9110.9 (3)C13—C18—H18119.7
N1—C8—H8124.6C17—C18—H18119.7
C10—N2—N3—C11−177.2 (2)C1—C6—C9—C8−0.2 (3)
C8—N1—C1—C2−178.6 (3)C5—C6—C9—C10−1.0 (5)
C7—N1—C1—C2−3.0 (4)C1—C6—C9—C10−178.3 (3)
C8—N1—C1—C60.3 (3)N3—N2—C10—C9179.1 (2)
C7—N1—C1—C6175.9 (2)C8—C9—C10—N2179.5 (3)
N1—C1—C2—C3176.3 (3)C6—C9—C10—N2−2.7 (4)
C6—C1—C2—C3−2.4 (4)N2—N3—C11—S2−179.82 (19)
C1—C2—C3—C41.8 (4)N2—N3—C11—S1−1.8 (3)
C2—C3—C4—C50.0 (4)C12—S1—C11—N3175.97 (19)
C3—C4—C5—C6−1.3 (4)C12—S1—C11—S2−6.1 (2)
C4—C5—C6—C10.8 (4)C11—S1—C12—C13−101.3 (2)
C4—C5—C6—C9−176.2 (3)S1—C12—C13—C1450.8 (3)
C2—C1—C6—C51.1 (4)S1—C12—C13—C18−129.3 (2)
N1—C1—C6—C5−177.9 (2)C18—C13—C14—C150.0 (4)
C2—C1—C6—C9178.9 (2)C12—C13—C14—C15179.9 (2)
N1—C1—C6—C9−0.1 (3)C13—C14—C15—C16−0.1 (4)
C1—N1—C8—C9−0.4 (3)C14—C15—C16—C170.3 (4)
C7—N1—C8—C9−175.9 (3)C15—C16—C17—C18−0.4 (4)
N1—C8—C9—C10178.6 (2)C14—C13—C18—C17−0.2 (4)
N1—C8—C9—C60.4 (3)C12—C13—C18—C17180.0 (2)
C5—C6—C9—C8177.1 (3)C16—C17—C18—C130.4 (4)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Benzyl N'-(1H-indol-3-ylmethyl-idene)-hydrazinecarbodithio-ate.

Authors:  Hamid Khaledi; Hapipah Mohd Ali; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-11
  2 in total
  1 in total

1.  Crystal structure of benzyl N'-[(1E,4E)-1,5-bis-(4-meth-oxy-phen-yl)penta-1,4-dien-3-yl-idene]hydrazine-1-carbodi-thio-ate.

Authors:  Nabeel Arif Tawfeeq; Huey Chong Kwong; Mohamed Ibrahim Mohamed Tahir; Thahira B S A Ravoof
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2019-10-03
  1 in total

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