| Literature DB >> 21581441 |
Katalin Selmeczi, Bernard Henry, Emmanuel Wenger, Slimane Dahaoui.
Abstract
Mol-ecules of the title compound, Gly-β-Ala-Histamine dihydro-chloride, C(10)H(19)N(5)O(2) (2+)·2Cl(-), are linked by N-H⋯O and N-H⋯Cl hydrogen bonds into two-dimensional polymeric sheets parallel to the (011) plane, forming a stacked structure along the a axis. The parallel layers are also inter-linked alternately by different N-H⋯Cl hydrogen bonds, forming a three-dimensional framework.Entities:
Year: 2008 PMID: 21581441 PMCID: PMC2959922 DOI: 10.1107/S1600536808035952
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H19N5O22+·2Cl– | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 12727 reflections | |
| θ = 2.7–29.2º | |
| µ = 0.46 mm−1 | |
| α = 81.702 (11)º | |
| β = 77.863 (11)º | Prism, colourless |
| γ = 69.543 (12)º | 0.30 × 0.20 × 0.12 mm |
| Oxford Diffraction Xcalibur-Saphire2 CCD diffractometer | 3307 independent reflections |
| Radiation source: fine-focus sealed tube | 1798 reflections with |
| Monochromator: graphite | |
| θmax = 29.2º | |
| ω scan | θmin = 2.7º |
| Absorption correction: numerical(ABSORB; DeTitta, 1985) | |
| 12727 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max < 0.001 | |
| 3307 reflections | Δρmax = 0.51 e Å−3 |
| 172 parameters | Δρmin = −0.35 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| O1 | 0.7290 (4) | 0.3622 (3) | 0.54649 (15) | 0.0302 (6) | |
| O2 | 0.7180 (3) | −0.1826 (2) | 0.77310 (14) | 0.0255 (5) | |
| N1 | 0.7705 (4) | 1.0791 (3) | 0.25403 (18) | 0.0255 (6) | |
| H1' | 0.7720 | 1.0903 | 0.1859 | 0.031* | |
| N2 | 0.7640 (4) | 1.1387 (3) | 0.40854 (18) | 0.0230 (6) | |
| H2' | 0.7614 | 1.1961 | 0.4609 | 0.028* | |
| N3 | 0.7314 (4) | 0.5944 (3) | 0.61436 (17) | 0.0217 (6) | |
| H3' | 0.7289 | 0.6443 | 0.6701 | 0.026* | |
| N4 | 0.7164 (4) | 0.0643 (3) | 0.83121 (17) | 0.0205 (6) | |
| H4' | 0.7173 | 0.1161 | 0.8854 | 0.025* | |
| N5 | 0.7507 (4) | −0.3688 (3) | 0.95958 (18) | 0.0223 (6) | |
| H5C' | 0.7717 | −0.4211 | 1.0243 | 0.033* | |
| H5B' | 0.8438 | −0.4329 | 0.9097 | 0.033* | |
| H5A' | 0.6275 | −0.3610 | 0.9505 | 0.033* | |
| C1 | 0.7671 (5) | 1.2013 (4) | 0.3094 (2) | 0.0271 (7) | |
| H1 | 0.7668 | 1.3152 | 0.2829 | 0.033* | |
| C2 | 0.7655 (4) | 0.9685 (3) | 0.4167 (2) | 0.0189 (7) | |
| C3 | 0.7717 (5) | 0.9304 (4) | 0.3183 (2) | 0.0222 (7) | |
| H3 | 0.7759 | 0.8228 | 0.2977 | 0.027* | |
| C4 | 0.7614 (5) | 0.8637 (4) | 0.5201 (2) | 0.0217 (7) | |
| H4B | 0.6470 | 0.9288 | 0.5709 | 0.026* | |
| H4A | 0.8842 | 0.8465 | 0.5473 | 0.026* | |
| C5 | 0.7448 (5) | 0.6879 (3) | 0.5113 (2) | 0.0201 (7) | |
| H5B | 0.6251 | 0.7041 | 0.4814 | 0.024* | |
| H5A | 0.8626 | 0.6195 | 0.4638 | 0.024* | |
| C6 | 0.7229 (4) | 0.4335 (4) | 0.6247 (2) | 0.0217 (7) | |
| C7 | 0.7099 (5) | 0.3428 (3) | 0.7336 (2) | 0.0195 (7) | |
| H7B | 0.5899 | 0.4119 | 0.7796 | 0.023* | |
| H7A | 0.8276 | 0.3333 | 0.7634 | 0.023* | |
| C8 | 0.7003 (5) | 0.1626 (3) | 0.7299 (2) | 0.0203 (7) | |
| H8B | 0.5730 | 0.1730 | 0.7097 | 0.024* | |
| H8A | 0.8098 | 0.0998 | 0.6761 | 0.024* | |
| C9 | 0.7297 (4) | −0.1029 (4) | 0.8434 (2) | 0.0190 (7) | |
| C10 | 0.7655 (5) | −0.1917 (3) | 0.9503 (2) | 0.0202 (7) | |
| H10B | 0.8992 | −0.1998 | 0.9607 | 0.024* | |
| H10A | 0.6660 | −0.1223 | 1.0054 | 0.024* | |
| Cl2 | 1.15091 (12) | −0.57052 (9) | 0.81161 (5) | 0.0251 (2) | |
| Cl1 | 0.71393 (12) | 1.24682 (9) | 0.03128 (5) | 0.0240 (2) |
| O1 | 0.0512 (17) | 0.0260 (12) | 0.0199 (11) | −0.0198 (12) | −0.0059 (10) | −0.0041 (9) |
| O2 | 0.0408 (15) | 0.0195 (11) | 0.0184 (11) | −0.0124 (11) | −0.0042 (10) | −0.0036 (9) |
| N1 | 0.0291 (17) | 0.0326 (15) | 0.0148 (13) | −0.0124 (13) | −0.0004 (11) | −0.0010 (11) |
| N2 | 0.0277 (16) | 0.0206 (14) | 0.0224 (14) | −0.0095 (13) | −0.0025 (12) | −0.0060 (11) |
| N3 | 0.0330 (17) | 0.0177 (13) | 0.0162 (12) | −0.0125 (12) | 0.0004 (11) | −0.0027 (10) |
| N4 | 0.0304 (16) | 0.0170 (13) | 0.0163 (12) | −0.0106 (12) | −0.0030 (11) | −0.0030 (10) |
| N5 | 0.0267 (16) | 0.0202 (13) | 0.0191 (13) | −0.0084 (12) | −0.0010 (11) | −0.0010 (10) |
| C1 | 0.0218 (19) | 0.0225 (17) | 0.0353 (19) | −0.0076 (15) | −0.0070 (15) | 0.0070 (15) |
| C2 | 0.0193 (18) | 0.0114 (15) | 0.0254 (16) | −0.0051 (13) | −0.0008 (13) | −0.0032 (12) |
| C3 | 0.0227 (19) | 0.0222 (17) | 0.0223 (16) | −0.0085 (15) | −0.0035 (14) | −0.0018 (13) |
| C4 | 0.0229 (19) | 0.0242 (16) | 0.0186 (15) | −0.0093 (15) | −0.0029 (13) | −0.0009 (13) |
| C5 | 0.0232 (18) | 0.0178 (15) | 0.0180 (15) | −0.0053 (14) | −0.0033 (13) | −0.0019 (12) |
| C6 | 0.0210 (19) | 0.0240 (17) | 0.0202 (16) | −0.0080 (15) | −0.0023 (13) | −0.0023 (13) |
| C7 | 0.0255 (19) | 0.0165 (15) | 0.0151 (15) | −0.0070 (14) | −0.0011 (13) | −0.0008 (12) |
| C8 | 0.0228 (19) | 0.0217 (16) | 0.0186 (15) | −0.0100 (14) | −0.0031 (13) | −0.0026 (12) |
| C9 | 0.0128 (17) | 0.0208 (16) | 0.0230 (16) | −0.0062 (14) | 0.0002 (13) | −0.0035 (13) |
| C10 | 0.0221 (18) | 0.0154 (15) | 0.0234 (16) | −0.0055 (14) | −0.0045 (14) | −0.0033 (12) |
| Cl2 | 0.0295 (5) | 0.0243 (4) | 0.0217 (4) | −0.0097 (4) | −0.0006 (3) | −0.0055 (3) |
| Cl1 | 0.0291 (5) | 0.0241 (4) | 0.0215 (4) | −0.0114 (4) | −0.0050 (3) | −0.0022 (3) |
| O1—C6 | 1.235 (3) | C1—H1 | 0.9500 |
| O2—C9 | 1.237 (3) | C2—C3 | 1.356 (4) |
| N1—C1 | 1.311 (4) | C2—C4 | 1.495 (4) |
| N1—C3 | 1.378 (3) | C3—H3 | 0.9500 |
| N1—H1' | 0.8800 | C4—C5 | 1.514 (4) |
| N2—C1 | 1.322 (4) | C4—H4B | 0.9900 |
| N2—C2 | 1.384 (3) | C4—H4A | 0.9900 |
| N2—H2' | 0.8800 | C5—H5B | 0.9900 |
| N3—C6 | 1.333 (3) | C5—H5A | 0.9900 |
| N3—C5 | 1.454 (3) | C6—C7 | 1.510 (4) |
| N3—H3' | 0.8800 | C7—C8 | 1.515 (3) |
| N4—C9 | 1.332 (3) | C7—H7B | 0.9900 |
| N4—C8 | 1.453 (3) | C7—H7A | 0.9900 |
| N4—H4' | 0.8800 | C8—H8B | 0.9900 |
| N5—C10 | 1.483 (3) | C8—H8A | 0.9900 |
| N5—H5C' | 0.9100 | C9—C10 | 1.510 (4) |
| N5—H5B' | 0.9100 | C10—H10B | 0.9900 |
| N5—H5A' | 0.9100 | C10—H10A | 0.9900 |
| C1—N1—C3 | 109.9 (2) | H4B—C4—H4A | 107.9 |
| C1—N1—H1' | 125.0 | N3—C5—C4 | 109.9 (2) |
| C3—N1—H1' | 125.0 | N3—C5—H5B | 109.7 |
| C1—N2—C2 | 109.1 (2) | C4—C5—H5B | 109.7 |
| C1—N2—H2' | 125.4 | N3—C5—H5A | 109.7 |
| C2—N2—H2' | 125.4 | C4—C5—H5A | 109.7 |
| C6—N3—C5 | 120.2 (2) | H5B—C5—H5A | 108.2 |
| C6—N3—H3' | 119.9 | O1—C6—N3 | 120.1 (3) |
| C5—N3—H3' | 119.9 | O1—C6—C7 | 122.2 (2) |
| C9—N4—C8 | 121.1 (2) | N3—C6—C7 | 117.8 (2) |
| C9—N4—H4' | 119.4 | C6—C7—C8 | 110.2 (2) |
| C8—N4—H4' | 119.4 | C6—C7—H7B | 109.6 |
| C10—N5—H5C' | 109.5 | C8—C7—H7B | 109.6 |
| C10—N5—H5B' | 109.5 | C6—C7—H7A | 109.6 |
| H5C'—N5—H5B' | 109.5 | C8—C7—H7A | 109.6 |
| C10—N5—H5A' | 109.5 | H7B—C7—H7A | 108.1 |
| H5C'—N5—H5A' | 109.5 | N4—C8—C7 | 110.9 (2) |
| H5B'—N5—H5A' | 109.5 | N4—C8—H8B | 109.5 |
| N1—C1—N2 | 108.3 (2) | C7—C8—H8B | 109.5 |
| N1—C1—H1 | 125.9 | N4—C8—H8A | 109.5 |
| N2—C1—H1 | 125.9 | C7—C8—H8A | 109.5 |
| C3—C2—N2 | 106.4 (2) | H8B—C8—H8A | 108.0 |
| C3—C2—C4 | 132.2 (2) | O2—C9—N4 | 123.5 (2) |
| N2—C2—C4 | 121.4 (2) | O2—C9—C10 | 121.6 (2) |
| C2—C3—N1 | 106.3 (2) | N4—C9—C10 | 114.9 (2) |
| C2—C3—H3 | 126.9 | N5—C10—C9 | 110.0 (2) |
| N1—C3—H3 | 126.9 | N5—C10—H10B | 109.7 |
| C2—C4—C5 | 111.9 (2) | C9—C10—H10B | 109.7 |
| C2—C4—H4B | 109.2 | N5—C10—H10A | 109.7 |
| C5—C4—H4B | 109.2 | C9—C10—H10A | 109.7 |
| C2—C4—H4A | 109.2 | H10B—C10—H10A | 108.2 |
| C5—C4—H4A | 109.2 |
| H··· | ||||
| N1—H1'···Cl1 | 0.88 | 2.27 | 3.083 (4) | 153 |
| N2—H2'···O1i | 0.88 | 1.81 | 2.670 (4) | 165 |
| N3—H3'···O2i | 0.88 | 2.07 | 2.927 (4) | 165 |
| N4—H4'···Cl1ii | 0.88 | 2.31 | 3.192 (4) | 178 |
| N5—H5C'···Cl2iii | 0.91 | 2.32 | 3.152 (4) | 152 |
| N5—H5B'···Cl2 | 0.91 | 2.32 | 3.191 (4) | 160 |
| N5—H5A'···Cl1iv | 0.91 | 2.31 | 3.161 (4) | 156 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1′⋯Cl1 | 0.88 | 2.27 | 3.083 (4) | 153 |
| N2—H2′⋯O1i | 0.88 | 1.81 | 2.670 (4) | 165 |
| N3—H3′⋯O2i | 0.88 | 2.07 | 2.927 (4) | 165 |
| N4—H4′⋯Cl1ii | 0.88 | 2.31 | 3.192 (4) | 178 |
| N5—H5C’⋯Cl2iii | 0.91 | 2.32 | 3.152 (4) | 152 |
| N5—H5 | 0.91 | 2.32 | 3.191 (4) | 160 |
| N5—H5 | 0.91 | 2.31 | 3.161 (4) | 156 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .