Literature DB >> 21581441

4-{2-[3-(2-Ammonioacetamido)propanamido]ethyl}-1H-imidazol-3-ium dichloride.

Katalin Selmeczi, Bernard Henry, Emmanuel Wenger, Slimane Dahaoui.   

Abstract

Mol-ecules of the title compound, Gly-β-Ala-Histamine dihydro-chloride, C(10)H(19)N(5)O(2) (2+)·2Cl(-), are linked by N-H⋯O and N-H⋯Cl hydrogen bonds into two-dimensional polymeric sheets parallel to the (011) plane, forming a stacked structure along the a axis. The parallel layers are also inter-linked alternately by different N-H⋯Cl hydrogen bonds, forming a three-dimensional framework.

Entities:  

Year:  2008        PMID: 21581441      PMCID: PMC2959922          DOI: 10.1107/S1600536808035952

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the complexation abilities of oligopeptides towards different metals, see: Kozlowski et al. (1999 ▶); Gajda et al. (1996 ▶). For bond lengths and angles in other oligopeptides, see: Itoh et al. (1977 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For related literature, see: Henry et al. (1993 ▶).

Experimental

Crystal data

C10H19N5O2 2+·2Cl M = 312.20 Triclinic, a = 7.2923 (10) Å b = 8.2215 (11) Å c = 13.0767 (15) Å α = 81.702 (11)° β = 77.863 (11)° γ = 69.543 (12)° V = 715.98 (16) Å3 Z = 2 Mo Kα radiation μ = 0.46 mm−1 T = 110 (2) K 0.30 × 0.20 × 0.12 mm

Data collection

Oxford Diffraction Xcalibur-Saphire2 CCD diffractometer Absorption correction: numerical (ABSORB; DeTitta, 1985 ▶) T min = 0.874, T max = 0.952 12727 measured reflections 3307 independent reflections 1798 reflections with I > 2σ(I) R int = 0.061

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.111 S = 0.97 3307 reflections 172 parameters H-atom parameters constrained Δρmax = 0.51 e Å−3 Δρmin = −0.35 e Å−3 Data collection: CryslisCCD (Oxford Diffraction, 2003 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2003 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: enCIFer (Allen et al., 2004 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808035952/cs2096sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808035952/cs2096Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H19N5O22+·2ClZ = 2
Mr = 312.20F000 = 328
Triclinic, P1Dx = 1.448 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 7.2923 (10) ÅCell parameters from 12727 reflections
b = 8.2215 (11) Åθ = 2.7–29.2º
c = 13.0767 (15) ŵ = 0.46 mm1
α = 81.702 (11)ºT = 110 (2) K
β = 77.863 (11)ºPrism, colourless
γ = 69.543 (12)º0.30 × 0.20 × 0.12 mm
V = 715.98 (16) Å3
Oxford Diffraction Xcalibur-Saphire2 CCD diffractometer3307 independent reflections
Radiation source: fine-focus sealed tube1798 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.061
T = 110(2) Kθmax = 29.2º
ω scanθmin = 2.7º
Absorption correction: numerical(ABSORB; DeTitta, 1985)h = −9→9
Tmin = 0.874, Tmax = 0.952k = −11→11
12727 measured reflectionsl = −17→16
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.046H-atom parameters constrained
wR(F2) = 0.111  w = 1/[σ2(Fo2) + (0.0489P)2] where P = (Fo2 + 2Fc2)/3
S = 0.97(Δ/σ)max < 0.001
3307 reflectionsΔρmax = 0.51 e Å3
172 parametersΔρmin = −0.35 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
xyzUiso*/Ueq
O10.7290 (4)0.3622 (3)0.54649 (15)0.0302 (6)
O20.7180 (3)−0.1826 (2)0.77310 (14)0.0255 (5)
N10.7705 (4)1.0791 (3)0.25403 (18)0.0255 (6)
H1'0.77201.09030.18590.031*
N20.7640 (4)1.1387 (3)0.40854 (18)0.0230 (6)
H2'0.76141.19610.46090.028*
N30.7314 (4)0.5944 (3)0.61436 (17)0.0217 (6)
H3'0.72890.64430.67010.026*
N40.7164 (4)0.0643 (3)0.83121 (17)0.0205 (6)
H4'0.71730.11610.88540.025*
N50.7507 (4)−0.3688 (3)0.95958 (18)0.0223 (6)
H5C'0.7717−0.42111.02430.033*
H5B'0.8438−0.43290.90970.033*
H5A'0.6275−0.36100.95050.033*
C10.7671 (5)1.2013 (4)0.3094 (2)0.0271 (7)
H10.76681.31520.28290.033*
C20.7655 (4)0.9685 (3)0.4167 (2)0.0189 (7)
C30.7717 (5)0.9304 (4)0.3183 (2)0.0222 (7)
H30.77590.82280.29770.027*
C40.7614 (5)0.8637 (4)0.5201 (2)0.0217 (7)
H4B0.64700.92880.57090.026*
H4A0.88420.84650.54730.026*
C50.7448 (5)0.6879 (3)0.5113 (2)0.0201 (7)
H5B0.62510.70410.48140.024*
H5A0.86260.61950.46380.024*
C60.7229 (4)0.4335 (4)0.6247 (2)0.0217 (7)
C70.7099 (5)0.3428 (3)0.7336 (2)0.0195 (7)
H7B0.58990.41190.77960.023*
H7A0.82760.33330.76340.023*
C80.7003 (5)0.1626 (3)0.7299 (2)0.0203 (7)
H8B0.57300.17300.70970.024*
H8A0.80980.09980.67610.024*
C90.7297 (4)−0.1029 (4)0.8434 (2)0.0190 (7)
C100.7655 (5)−0.1917 (3)0.9503 (2)0.0202 (7)
H10B0.8992−0.19980.96070.024*
H10A0.6660−0.12231.00540.024*
Cl21.15091 (12)−0.57052 (9)0.81161 (5)0.0251 (2)
Cl10.71393 (12)1.24682 (9)0.03128 (5)0.0240 (2)
U11U22U33U12U13U23
O10.0512 (17)0.0260 (12)0.0199 (11)−0.0198 (12)−0.0059 (10)−0.0041 (9)
O20.0408 (15)0.0195 (11)0.0184 (11)−0.0124 (11)−0.0042 (10)−0.0036 (9)
N10.0291 (17)0.0326 (15)0.0148 (13)−0.0124 (13)−0.0004 (11)−0.0010 (11)
N20.0277 (16)0.0206 (14)0.0224 (14)−0.0095 (13)−0.0025 (12)−0.0060 (11)
N30.0330 (17)0.0177 (13)0.0162 (12)−0.0125 (12)0.0004 (11)−0.0027 (10)
N40.0304 (16)0.0170 (13)0.0163 (12)−0.0106 (12)−0.0030 (11)−0.0030 (10)
N50.0267 (16)0.0202 (13)0.0191 (13)−0.0084 (12)−0.0010 (11)−0.0010 (10)
C10.0218 (19)0.0225 (17)0.0353 (19)−0.0076 (15)−0.0070 (15)0.0070 (15)
C20.0193 (18)0.0114 (15)0.0254 (16)−0.0051 (13)−0.0008 (13)−0.0032 (12)
C30.0227 (19)0.0222 (17)0.0223 (16)−0.0085 (15)−0.0035 (14)−0.0018 (13)
C40.0229 (19)0.0242 (16)0.0186 (15)−0.0093 (15)−0.0029 (13)−0.0009 (13)
C50.0232 (18)0.0178 (15)0.0180 (15)−0.0053 (14)−0.0033 (13)−0.0019 (12)
C60.0210 (19)0.0240 (17)0.0202 (16)−0.0080 (15)−0.0023 (13)−0.0023 (13)
C70.0255 (19)0.0165 (15)0.0151 (15)−0.0070 (14)−0.0011 (13)−0.0008 (12)
C80.0228 (19)0.0217 (16)0.0186 (15)−0.0100 (14)−0.0031 (13)−0.0026 (12)
C90.0128 (17)0.0208 (16)0.0230 (16)−0.0062 (14)0.0002 (13)−0.0035 (13)
C100.0221 (18)0.0154 (15)0.0234 (16)−0.0055 (14)−0.0045 (14)−0.0033 (12)
Cl20.0295 (5)0.0243 (4)0.0217 (4)−0.0097 (4)−0.0006 (3)−0.0055 (3)
Cl10.0291 (5)0.0241 (4)0.0215 (4)−0.0114 (4)−0.0050 (3)−0.0022 (3)
O1—C61.235 (3)C1—H10.9500
O2—C91.237 (3)C2—C31.356 (4)
N1—C11.311 (4)C2—C41.495 (4)
N1—C31.378 (3)C3—H30.9500
N1—H1'0.8800C4—C51.514 (4)
N2—C11.322 (4)C4—H4B0.9900
N2—C21.384 (3)C4—H4A0.9900
N2—H2'0.8800C5—H5B0.9900
N3—C61.333 (3)C5—H5A0.9900
N3—C51.454 (3)C6—C71.510 (4)
N3—H3'0.8800C7—C81.515 (3)
N4—C91.332 (3)C7—H7B0.9900
N4—C81.453 (3)C7—H7A0.9900
N4—H4'0.8800C8—H8B0.9900
N5—C101.483 (3)C8—H8A0.9900
N5—H5C'0.9100C9—C101.510 (4)
N5—H5B'0.9100C10—H10B0.9900
N5—H5A'0.9100C10—H10A0.9900
C1—N1—C3109.9 (2)H4B—C4—H4A107.9
C1—N1—H1'125.0N3—C5—C4109.9 (2)
C3—N1—H1'125.0N3—C5—H5B109.7
C1—N2—C2109.1 (2)C4—C5—H5B109.7
C1—N2—H2'125.4N3—C5—H5A109.7
C2—N2—H2'125.4C4—C5—H5A109.7
C6—N3—C5120.2 (2)H5B—C5—H5A108.2
C6—N3—H3'119.9O1—C6—N3120.1 (3)
C5—N3—H3'119.9O1—C6—C7122.2 (2)
C9—N4—C8121.1 (2)N3—C6—C7117.8 (2)
C9—N4—H4'119.4C6—C7—C8110.2 (2)
C8—N4—H4'119.4C6—C7—H7B109.6
C10—N5—H5C'109.5C8—C7—H7B109.6
C10—N5—H5B'109.5C6—C7—H7A109.6
H5C'—N5—H5B'109.5C8—C7—H7A109.6
C10—N5—H5A'109.5H7B—C7—H7A108.1
H5C'—N5—H5A'109.5N4—C8—C7110.9 (2)
H5B'—N5—H5A'109.5N4—C8—H8B109.5
N1—C1—N2108.3 (2)C7—C8—H8B109.5
N1—C1—H1125.9N4—C8—H8A109.5
N2—C1—H1125.9C7—C8—H8A109.5
C3—C2—N2106.4 (2)H8B—C8—H8A108.0
C3—C2—C4132.2 (2)O2—C9—N4123.5 (2)
N2—C2—C4121.4 (2)O2—C9—C10121.6 (2)
C2—C3—N1106.3 (2)N4—C9—C10114.9 (2)
C2—C3—H3126.9N5—C10—C9110.0 (2)
N1—C3—H3126.9N5—C10—H10B109.7
C2—C4—C5111.9 (2)C9—C10—H10B109.7
C2—C4—H4B109.2N5—C10—H10A109.7
C5—C4—H4B109.2C9—C10—H10A109.7
C2—C4—H4A109.2H10B—C10—H10A108.2
C5—C4—H4A109.2
D—H···AD—HH···AD···AD—H···A
N1—H1'···Cl10.882.273.083 (4)153
N2—H2'···O1i0.881.812.670 (4)165
N3—H3'···O2i0.882.072.927 (4)165
N4—H4'···Cl1ii0.882.313.192 (4)178
N5—H5C'···Cl2iii0.912.323.152 (4)152
N5—H5B'···Cl20.912.323.191 (4)160
N5—H5A'···Cl1iv0.912.313.161 (4)156
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1′⋯Cl10.882.273.083 (4)153
N2—H2′⋯O1i0.881.812.670 (4)165
N3—H3′⋯O2i0.882.072.927 (4)165
N4—H4′⋯Cl1ii0.882.313.192 (4)178
N5—H5C’⋯Cl2iii0.912.323.152 (4)152
N5—H5B′⋯Cl20.912.323.191 (4)160
N5—H5A′⋯Cl1iv0.912.313.161 (4)156

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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1.  l-Alanylglycylhistamine dihydro-chloride.

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