Literature DB >> 21581417

3-(4-Pyrid-yl)-4,5-dihydro-1H-benzo[g]indazole.

Xin Xiao, Yun-Qiang Zhang, Sai-Feng Xue, Qian-Jiang Zhu, Zhu Tao.   

Abstract

In the mol-ecular structure of the title compound, C(16)H(13)N(3), the cyclo-hexa-1,3-diene ring displays a screw-boat conformation and the pyridine ring is twisted by a dihedral angle of 29.13 (9)° with respect to the pyrazole ring. Mol-ecules are linked into a supra-molecular structure by N-H⋯N hydrogen bonding.

Entities:  

Year:  2008        PMID: 21581417      PMCID: PMC2960070          DOI: 10.1107/S1600536808038944

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to indazole derivatives and their pharmacological properties, see: Bistochi et al. (1981 ▶); Keppler & Hartmann (1994 ▶); Sun et al. (1997 ▶); Gomtsyan et al. (2008 ▶).

Experimental

Crystal data

C16H13N3 M = 247.29 Orthorhombic, a = 15.306 (2) Å b = 8.8368 (13) Å c = 18.543 (3) Å V = 2508.1 (6) Å3 Z = 8 Mo Kα radiation μ = 0.08 mm−1 T = 293 (2) K 0.22 × 0.19 × 0.18 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: none 24926 measured reflections 2217 independent reflections 1978 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.130 S = 1.08 2217 reflections 172 parameters H-atom parameters constrained Δρmax = 0.44 e Å−3 Δρmin = −0.25 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808038944/xu2463sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808038944/xu2463Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H13N3F000 = 1040
Mr = 247.29Dx = 1.310 Mg m3
Orthorhombic, PbcaMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 2217 reflections
a = 15.306 (2) Åθ = 2.2–25.0º
b = 8.8368 (13) ŵ = 0.08 mm1
c = 18.543 (3) ÅT = 293 (2) K
V = 2508.1 (6) Å3Block, colorless
Z = 80.22 × 0.19 × 0.18 mm
Bruker SMART CCD area-detector diffractometer1978 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.036
Monochromator: graphiteθmax = 25.0º
T = 293(2) Kθmin = 2.2º
φ and ω scansh = −18→17
Absorption correction: nonek = −10→9
24926 measured reflectionsl = −22→22
2217 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048H-atom parameters constrained
wR(F2) = 0.130  w = 1/[σ2(Fo2) + (0.0626P)2 + 0.7587P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
2217 reflectionsΔρmax = 0.44 e Å3
172 parametersΔρmin = −0.25 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N20.37603 (9)0.33266 (16)0.11204 (7)0.0442 (4)
H20.32990.38820.11240.053*
N10.43088 (9)0.32191 (17)0.05503 (8)0.0458 (4)
C20.65724 (12)0.2397 (2)−0.07332 (10)0.0563 (5)
H2A0.67470.3078−0.10870.068*
C110.41088 (14)0.1591 (2)0.29215 (10)0.0567 (5)
C50.56409 (10)0.18489 (19)0.02662 (9)0.0436 (4)
C70.40188 (10)0.24622 (18)0.16853 (9)0.0415 (4)
C120.36103 (11)0.2337 (2)0.23932 (9)0.0466 (4)
C80.47774 (11)0.17516 (19)0.14790 (9)0.0438 (4)
C60.49343 (10)0.22560 (19)0.07685 (9)0.0425 (4)
C40.60463 (11)0.0446 (2)0.02934 (10)0.0484 (4)
H40.5881−0.02610.06390.058*
C90.52238 (13)0.0675 (2)0.19845 (11)0.0631 (5)
H9A0.5018−0.03460.18950.076*
H9B0.58490.06960.18990.076*
C10.66954 (11)0.0109 (2)−0.01959 (10)0.0534 (5)
H10.6958−0.0838−0.01650.064*
N30.69715 (9)0.10469 (18)−0.07098 (8)0.0534 (4)
C30.59220 (12)0.2840 (2)−0.02683 (10)0.0528 (5)
H30.56720.3795−0.03110.063*
C130.27959 (13)0.2938 (2)0.25682 (11)0.0614 (5)
H130.24680.34340.22190.074*
C140.37630 (18)0.1460 (3)0.36132 (11)0.0726 (6)
H140.40820.09620.39680.087*
C150.29537 (18)0.2057 (3)0.37810 (12)0.0771 (7)
H150.27330.19590.42460.092*
C160.24751 (16)0.2795 (3)0.32620 (12)0.0761 (7)
H160.19320.32000.33780.091*
C100.50413 (16)0.1100 (3)0.27516 (12)0.0759 (7)
H10A0.54320.19180.28840.091*
H10B0.51830.02400.30550.091*
U11U22U33U12U13U23
N20.0354 (7)0.0488 (8)0.0484 (8)0.0074 (6)−0.0015 (6)0.0005 (6)
N10.0395 (8)0.0497 (8)0.0480 (8)0.0035 (6)−0.0009 (6)0.0016 (6)
C20.0498 (11)0.0611 (12)0.0579 (11)−0.0071 (9)0.0052 (8)0.0048 (9)
C110.0704 (12)0.0498 (11)0.0499 (10)−0.0028 (9)−0.0010 (9)0.0031 (8)
C50.0331 (8)0.0480 (9)0.0496 (9)−0.0036 (7)−0.0023 (7)−0.0032 (7)
C70.0375 (9)0.0422 (9)0.0447 (9)−0.0016 (7)−0.0033 (7)−0.0008 (7)
C120.0474 (10)0.0449 (9)0.0474 (9)−0.0077 (8)0.0013 (7)−0.0040 (7)
C80.0379 (9)0.0430 (9)0.0504 (10)0.0011 (7)−0.0024 (7)0.0020 (7)
C60.0361 (8)0.0416 (9)0.0498 (9)−0.0019 (7)−0.0022 (7)0.0007 (7)
C40.0412 (9)0.0455 (10)0.0585 (10)−0.0024 (7)0.0045 (8)0.0002 (8)
C90.0590 (12)0.0645 (12)0.0658 (12)0.0145 (10)−0.0004 (9)0.0158 (10)
C10.0428 (10)0.0493 (10)0.0681 (12)−0.0001 (8)0.0046 (8)−0.0068 (9)
N30.0396 (8)0.0601 (10)0.0605 (9)−0.0063 (7)0.0053 (7)−0.0069 (7)
C30.0455 (10)0.0520 (11)0.0610 (11)0.0020 (8)0.0051 (8)0.0058 (9)
C130.0494 (11)0.0756 (13)0.0592 (11)−0.0032 (10)0.0058 (9)−0.0080 (10)
C140.0972 (18)0.0692 (14)0.0515 (11)−0.0096 (13)0.0013 (11)0.0068 (10)
C150.0888 (17)0.0870 (16)0.0554 (12)−0.0268 (14)0.0208 (12)−0.0080 (11)
C160.0628 (13)0.0966 (17)0.0689 (13)−0.0122 (12)0.0210 (11)−0.0184 (13)
C100.0849 (14)0.0828 (16)0.0600 (12)0.0256 (12)−0.0095 (11)0.0120 (11)
N2—N11.353 (2)C4—C11.378 (2)
N2—C71.356 (2)C4—H40.9300
N2—H20.8600C9—C101.497 (3)
N1—C61.343 (2)C9—H9A0.9700
C2—N31.341 (3)C9—H9B0.9700
C2—C31.374 (3)C1—N31.332 (2)
C2—H2A0.9300C1—H10.9300
C11—C141.393 (3)C3—H30.9300
C11—C121.406 (3)C13—C161.383 (3)
C11—C101.525 (3)C13—H130.9300
C5—C41.387 (2)C14—C151.382 (4)
C5—C31.391 (2)C14—H140.9300
C5—C61.472 (2)C15—C161.374 (4)
C7—C81.374 (2)C15—H150.9300
C7—C121.458 (2)C16—H160.9300
C12—C131.393 (3)C10—H10A0.9700
C8—C61.412 (2)C10—H10B0.9700
C8—C91.500 (2)
N1—N2—C7112.52 (13)C8—C9—H9A109.6
N1—N2—H2123.7C10—C9—H9B109.6
C7—N2—H2123.7C8—C9—H9B109.6
C6—N1—N2104.56 (13)H9A—C9—H9B108.1
N3—C2—C3124.28 (18)N3—C1—C4124.42 (18)
N3—C2—H2A117.9N3—C1—H1117.8
C3—C2—H2A117.9C4—C1—H1117.8
C14—C11—C12118.3 (2)C1—N3—C2115.61 (16)
C14—C11—C10121.50 (19)C2—C3—C5119.47 (18)
C12—C11—C10119.84 (17)C2—C3—H3120.3
C4—C5—C3116.76 (16)C5—C3—H3120.3
C4—C5—C6121.60 (16)C16—C13—C12120.0 (2)
C3—C5—C6121.63 (16)C16—C13—H13120.0
N2—C7—C8106.80 (14)C12—C13—H13120.0
N2—C7—C12127.82 (15)C15—C14—C11121.1 (2)
C8—C7—C12125.33 (15)C15—C14—H14119.5
C13—C12—C11120.13 (17)C11—C14—H14119.5
C13—C12—C7124.38 (17)C16—C15—C14120.1 (2)
C11—C12—C7115.47 (16)C16—C15—H15120.0
C7—C8—C6105.03 (14)C14—C15—H15120.0
C7—C8—C9120.04 (16)C15—C16—C13120.4 (2)
C6—C8—C9134.91 (16)C15—C16—H16119.8
N1—C6—C8111.09 (15)C13—C16—H16119.8
N1—C6—C5119.20 (15)C9—C10—C11116.24 (18)
C8—C6—C5129.68 (15)C9—C10—H10A108.2
C1—C4—C5119.47 (17)C11—C10—H10A108.2
C1—C4—H4120.3C9—C10—H10B108.2
C5—C4—H4120.3C11—C10—H10B108.2
C10—C9—C8110.47 (17)H10A—C10—H10B107.4
C10—C9—H9A109.6
D—H···AD—HH···AD···AD—H···A
N2—H2···N3i0.862.172.895 (2)141
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯N3i0.862.172.895 (2)141

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Identification of (R)-1-(5-tert-butyl-2,3-dihydro-1H-inden-1-yl)-3-(1H-indazol-4-yl)urea (ABT-102) as a potent TRPV1 antagonist for pain management.

Authors:  Arthur Gomtsyan; Erol K Bayburt; Robert G Schmidt; Carol S Surowy; Prisca Honore; Kennan C Marsh; Steven M Hannick; Heath A McDonald; Jill M Wetter; James P Sullivan; Michael F Jarvis; Connie R Faltynek; Chih-Hung Lee
Journal:  J Med Chem       Date:  2008-01-10       Impact factor: 7.446

3.  [N1-substituted 1H-indazole-3-ethyl carboxylates and 1H-indazole-3-hydroxamic acids].

Authors:  G A Bistocchi; G De Meo; M Pedini; A Ricci; H Brouilhet; S Boucherie; M Rabaud; P Jacquignon
Journal:  Farmaco Sci       Date:  1981-05

4.  New tumor-inhibiting metal complexes. Chemistry and antitumor properties.

Authors:  B K Keppler; M Hartmann
Journal:  Met Based Drugs       Date:  1994
  4 in total

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