Literature DB >> 21581380

Bis[5-oxo-4,5-dihydro-8H-2-azonia-4,8,9-trizabicyclo[4.3.0]nona-2,6,9(1)-triene] sulfate.

Nittala V Ravindra, Gopal M Panpalia, Jagarlapudi A R P Sarma.   

Abstract

In the crystal structure of the title compound, 2C(5)H(5)N(4)O(+)·SO(4) (2-), N-H⋯O hydrogen bonds assemble the mol-ecules into a two-dimensional network structure parallel to the cb plane. The S atom of the sulfate ion lies on a special position on a twofold axis.

Entities:  

Year:  2008        PMID: 21581380      PMCID: PMC2960099          DOI: 10.1107/S1600536808038026

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Elion et al. (1962 ▶); Rundles et al. (1966 ▶). For related structures, see: Prusiner & Sundaralingam (1972 ▶); Gadret et al. (1974 ▶); Sheldrick & Bell (1987 ▶); Singh & Pedersen (1993 ▶).

Experimental

Crystal data

2C5H5N4O+·SO4 2− M = 370.32 Monoclinic, a = 12.337 (3) Å b = 10.054 (2) Å c = 11.064 (2) Å β = 102.42 (3)° V = 1340.2 (5) Å3 Z = 4 Mo Kα radiation μ = 0.30 mm−1 T = 298 (2) K 0.20 × 0.20 × 0.10 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: none 3561 measured reflections 1323 independent reflections 1252 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.096 S = 1.05 1323 reflections 132 parameters All H-atom parameters refined Δρmax = 0.32 e Å−3 Δρmin = −0.38 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808038026/gw2054sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808038026/gw2054Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C5H5N4O+·S1O42–F000 = 760
Mr = 370.32Dx = 1.835 Mg m3
Monoclinic, C2/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 1323 reflections
a = 12.337 (3) Åθ = 2.6–26.1º
b = 10.054 (2) ŵ = 0.30 mm1
c = 11.064 (2) ÅT = 298 (2) K
β = 102.42 (3)ºPlate, colourless
V = 1340.2 (5) Å30.20 × 0.20 × 0.10 mm
Z = 4
Bruker SMART CCD area-detector diffractometer1252 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.017
Monochromator: graphiteθmax = 26.1º
T = 298(2) Kθmin = 2.6º
φ and ω scansh = −15→11
Absorption correction: nonek = −10→12
3561 measured reflectionsl = −13→13
1323 independent reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullAll H-atom parameters refined
R[F2 > 2σ(F2)] = 0.035  w = 1/[σ2(Fo2) + (0.0621P)2 + 0.9856P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.096(Δ/σ)max < 0.001
S = 1.05Δρmax = 0.32 e Å3
1323 reflectionsΔρmin = −0.38 e Å3
132 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0068 (13)
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.50000.24338 (5)0.25000.0248 (2)
O30.41241 (12)0.33107 (12)0.17777 (11)0.0458 (4)
O20.45510 (13)0.16122 (14)0.33449 (12)0.0472 (4)
O10.32972 (10)0.07703 (11)0.91973 (10)0.0354 (3)
N10.35100 (11)0.30200 (13)0.92837 (12)0.0279 (3)
C40.35629 (12)0.19500 (15)0.73986 (13)0.0244 (3)
N30.38403 (11)0.18821 (14)0.55266 (13)0.0289 (3)
N40.38369 (11)0.32129 (13)0.57759 (12)0.0290 (3)
N20.36693 (11)0.43601 (13)0.76273 (12)0.0281 (3)
C10.34391 (12)0.17773 (15)0.86560 (14)0.0254 (3)
C30.36700 (12)0.32242 (14)0.69190 (14)0.0245 (3)
C50.36919 (13)0.11072 (16)0.64455 (14)0.0275 (3)
C20.36240 (13)0.41996 (16)0.87928 (14)0.0287 (4)
H20.3674 (16)0.4935 (19)0.9297 (18)0.033 (5)*
H40.3710 (16)0.018 (2)0.6442 (18)0.036 (5)*
H30.3781 (18)0.522 (2)0.735 (2)0.049 (6)*
H50.3967 (18)0.168 (2)0.485 (2)0.045 (6)*
H10.3606 (18)0.299 (2)1.012 (2)0.044 (5)*
U11U22U33U12U13U23
S10.0361 (3)0.0221 (3)0.0175 (3)0.0000.0085 (2)0.000
O30.0595 (8)0.0395 (7)0.0306 (6)0.0168 (6)−0.0078 (6)−0.0102 (5)
O20.0712 (9)0.0445 (8)0.0339 (7)−0.0155 (7)0.0293 (7)−0.0026 (6)
O10.0502 (7)0.0289 (6)0.0290 (6)−0.0007 (5)0.0131 (5)0.0064 (5)
N10.0360 (7)0.0293 (7)0.0196 (7)0.0007 (5)0.0085 (5)−0.0018 (5)
C40.0280 (7)0.0244 (8)0.0212 (7)−0.0003 (5)0.0063 (6)−0.0002 (5)
N30.0348 (7)0.0323 (8)0.0208 (6)0.0000 (5)0.0088 (5)−0.0051 (5)
N40.0354 (7)0.0306 (7)0.0220 (7)0.0002 (5)0.0081 (5)0.0016 (5)
N20.0372 (7)0.0218 (7)0.0256 (7)0.0006 (5)0.0075 (5)0.0001 (5)
C10.0268 (7)0.0279 (8)0.0220 (7)0.0008 (6)0.0065 (6)−0.0001 (5)
C30.0267 (7)0.0259 (8)0.0209 (7)0.0008 (5)0.0051 (6)−0.0011 (5)
C50.0320 (8)0.0264 (8)0.0246 (7)−0.0005 (6)0.0071 (6)−0.0044 (6)
C20.0333 (8)0.0273 (8)0.0251 (7)0.0017 (6)0.0056 (6)−0.0052 (6)
S1—O2i1.4442 (12)C4—C11.442 (2)
S1—O21.4443 (12)N3—C51.324 (2)
S1—O31.4873 (13)N3—N41.366 (2)
S1—O3i1.4873 (13)N3—H50.82 (2)
O1—C11.2081 (18)N4—C31.324 (2)
N1—C21.324 (2)N2—C21.313 (2)
N1—C11.423 (2)N2—C31.3851 (19)
N1—H10.91 (2)N2—H30.94 (2)
C4—C51.388 (2)C5—H40.94 (2)
C4—C31.404 (2)C2—H20.92 (2)
O2i—S1—O2110.23 (11)C2—N2—C3117.38 (13)
O2i—S1—O3109.07 (8)C2—N2—H3118.7 (13)
O2—S1—O3110.57 (9)C3—N2—H3123.5 (13)
O2i—S1—O3i110.57 (9)O1—C1—N1119.61 (14)
O2—S1—O3i109.07 (8)O1—C1—C4129.47 (14)
O3—S1—O3i107.30 (11)N1—C1—C4110.91 (13)
C2—N1—C1125.94 (13)N4—C3—N2124.51 (14)
C2—N1—H1116.4 (14)N4—C3—C4113.56 (13)
C1—N1—H1116.7 (14)N2—C3—C4121.80 (13)
C5—C4—C3103.56 (13)N3—C5—C4106.34 (14)
C5—C4—C1135.43 (14)N3—C5—H4125.2 (12)
C3—C4—C1120.84 (13)C4—C5—H4128.4 (12)
C5—N3—N4114.47 (13)N2—C2—N1122.93 (14)
C5—N3—H5129.3 (15)N2—C2—H2119.1 (12)
N4—N3—H5116.1 (15)N1—C2—H2118.0 (12)
C3—N4—N3102.07 (12)
D—H···AD—HH···AD···AD—H···A
N2—H3···O3ii0.936 (10)1.698 (14)2.628 (2)173 (3)
N3—H5···O20.819 (10)1.957 (18)2.753 (3)164 (3)
N1—H1···O3iii0.906 (10)1.838 (13)2.716 (3)163 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H3⋯O3i0.936 (10)1.698 (14)2.628 (2)173 (3)
N3—H5⋯O20.819 (10)1.957 (18)2.753 (3)164 (3)
N1—H1⋯O3ii0.906 (10)1.838 (13)2.716 (3)163 (3)

Symmetry codes: (i) ; (ii) .

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