Literature DB >> 21581371

4-Nitro-N-(8-quinol-yl)benzamide.

Gang Lei1, Lin-Hai Jing, Li Zhou.   

Abstract

In the title compound, C(16)H(11)N(3)O(3), the amide group is twisted away from the plane of the quinoline benzene ring by 3.93 (5)°, but is twisted away from the nitro-benzene ring by 22.68 (4)°. A weak intra-molecular C-H⋯O hydrogen bond is observed. In the crystal structure, mol-ecules are linked into a chain along the a axis by inter-molecular C-H⋯O hydrogen bonds.

Entities:  

Year:  2008        PMID: 21581371      PMCID: PMC2959822          DOI: 10.1107/S1600536808038038

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Daoud et al. (2000 ▶); Westaway et al. (2006 ▶). For related structures, see: Lei et al. (2008a ▶,b ▶).

Experimental

Crystal data

C16H11N3O3 M = 293.28 Monoclinic, a = 7.5230 (15) Å b = 25.031 (5) Å c = 6.9596 (15) Å β = 100.081 (3)° V = 1290.3 (5) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 93 (2) K 0.43 × 0.30 × 0.15 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: none 10531 measured reflections 2905 independent reflections 2542 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.135 S = 1.00 2905 reflections 199 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.27 e Å−3 Data collection: RAPID-AUTO (Rigaku, 2004 ▶); cell refinement: RAPID-AUTO; data reduction: RAPID-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808038038/ci2725sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808038038/ci2725Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H11N3O3F000 = 608
Mr = 293.28Dx = 1.510 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3970 reflections
a = 7.5230 (15) Åθ = 3.1–27.5º
b = 25.031 (5) ŵ = 0.11 mm1
c = 6.9596 (15) ÅT = 93 (2) K
β = 100.081 (3)ºBlock, white
V = 1290.3 (5) Å30.43 × 0.30 × 0.15 mm
Z = 4
Rigaku R-AXIS RAPID diffractometer2542 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.030
Monochromator: graphiteθmax = 27.5º
T = 93(2) Kθmin = 3.1º
ω scansh = −9→9
Absorption correction: nonek = −32→21
10531 measured reflectionsl = −9→9
2905 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.046H-atom parameters constrained
wR(F2) = 0.135  w = 1/[σ2(Fo2) + (0.0868P)2 + 0.086P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max = 0.001
2905 reflectionsΔρmax = 0.27 e Å3
199 parametersΔρmin = −0.27 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.69786 (14)0.38934 (4)0.50464 (16)0.0233 (3)
O2−0.00273 (15)0.55640 (4)0.15111 (17)0.0268 (3)
O3−0.19660 (14)0.49876 (4)0.22148 (16)0.0286 (3)
N10.38108 (16)0.21834 (5)0.42312 (18)0.0192 (3)
N20.51347 (16)0.31652 (5)0.46574 (18)0.0188 (3)
H2N0.39930.30690.43970.023*
N3−0.04073 (16)0.51288 (5)0.21646 (18)0.0202 (3)
C20.3131 (2)0.16969 (6)0.3996 (2)0.0220 (3)
H20.18600.16630.36190.026*
C30.4163 (2)0.12257 (6)0.4267 (2)0.0225 (3)
H30.36000.08860.40730.027*
C40.5990 (2)0.12671 (6)0.4816 (2)0.0212 (3)
H40.67130.09540.50170.025*
C50.8683 (2)0.18552 (6)0.5631 (2)0.0208 (3)
H50.94730.15560.58200.025*
C60.9366 (2)0.23613 (6)0.5891 (2)0.0212 (3)
H61.06310.24100.62730.025*
C70.8229 (2)0.28130 (6)0.5603 (2)0.0199 (3)
H70.87290.31610.58030.024*
C80.64030 (19)0.27499 (5)0.5036 (2)0.0170 (3)
C90.56440 (19)0.22250 (5)0.4778 (2)0.0172 (3)
C100.6807 (2)0.17763 (6)0.5084 (2)0.0187 (3)
C110.54650 (19)0.36987 (6)0.4646 (2)0.0183 (3)
C120.38470 (19)0.40539 (5)0.4061 (2)0.0176 (3)
C130.2074 (2)0.39106 (6)0.4189 (2)0.0192 (3)
H130.18330.35690.46790.023*
C140.06669 (19)0.42655 (6)0.3603 (2)0.0196 (3)
H14−0.05400.41740.36980.023*
C150.10717 (18)0.47577 (6)0.2876 (2)0.0177 (3)
C160.2814 (2)0.49139 (6)0.2769 (2)0.0197 (3)
H160.30510.52580.22950.024*
C170.4202 (2)0.45575 (6)0.3369 (2)0.0194 (3)
H170.54100.46570.33080.023*
U11U22U33U12U13U23
O10.0184 (5)0.0193 (5)0.0318 (6)−0.0021 (4)0.0033 (5)0.0004 (4)
O20.0276 (6)0.0197 (6)0.0326 (6)0.0013 (4)0.0041 (5)0.0062 (5)
O30.0170 (6)0.0307 (6)0.0390 (7)0.0022 (4)0.0079 (5)0.0071 (5)
N10.0178 (6)0.0208 (6)0.0201 (6)−0.0022 (5)0.0061 (5)−0.0010 (5)
N20.0153 (6)0.0159 (6)0.0255 (7)0.0000 (4)0.0045 (5)−0.0006 (5)
N30.0199 (6)0.0209 (6)0.0202 (6)0.0015 (5)0.0049 (5)−0.0005 (5)
C20.0219 (8)0.0245 (8)0.0201 (8)−0.0037 (6)0.0055 (6)−0.0010 (6)
C30.0285 (8)0.0194 (7)0.0201 (7)−0.0043 (6)0.0055 (6)−0.0016 (6)
C40.0275 (8)0.0183 (7)0.0190 (7)0.0024 (6)0.0073 (6)0.0004 (6)
C50.0205 (7)0.0221 (7)0.0198 (7)0.0055 (6)0.0037 (6)0.0022 (6)
C60.0181 (7)0.0252 (8)0.0207 (7)0.0023 (6)0.0044 (6)0.0013 (6)
C70.0213 (7)0.0194 (7)0.0198 (7)−0.0020 (6)0.0053 (6)−0.0009 (6)
C80.0180 (7)0.0183 (7)0.0157 (7)0.0022 (5)0.0056 (6)0.0001 (5)
C90.0179 (7)0.0195 (7)0.0150 (7)0.0011 (5)0.0051 (6)−0.0004 (5)
C100.0224 (7)0.0201 (7)0.0144 (7)0.0011 (6)0.0054 (6)0.0007 (5)
C110.0194 (7)0.0186 (7)0.0173 (7)−0.0009 (6)0.0047 (6)−0.0011 (5)
C120.0180 (7)0.0174 (7)0.0173 (7)−0.0012 (5)0.0033 (6)−0.0022 (5)
C130.0215 (7)0.0173 (7)0.0192 (7)−0.0011 (6)0.0041 (6)−0.0005 (6)
C140.0183 (7)0.0197 (7)0.0214 (7)−0.0013 (6)0.0055 (6)−0.0013 (6)
C150.0183 (7)0.0174 (7)0.0171 (7)0.0025 (5)0.0022 (6)−0.0010 (5)
C160.0224 (8)0.0173 (7)0.0196 (7)−0.0032 (6)0.0046 (6)0.0004 (6)
C170.0190 (7)0.0188 (7)0.0210 (7)−0.0024 (6)0.0047 (6)−0.0012 (6)
O1—C111.2250 (17)C6—C71.411 (2)
O2—N31.2332 (15)C6—H60.95
O3—N31.2311 (16)C7—C81.370 (2)
N1—C21.3198 (18)C7—H70.95
N1—C91.3689 (18)C8—C91.4311 (19)
N2—C111.3587 (18)C9—C101.4166 (19)
N2—C81.4045 (17)C11—C121.505 (2)
N2—H2N0.88C12—C171.3921 (19)
N3—C151.4673 (18)C12—C131.399 (2)
C2—C31.406 (2)C13—C141.388 (2)
C2—H20.95C13—H130.95
C3—C41.365 (2)C14—C151.386 (2)
C3—H30.95C14—H140.95
C4—C101.413 (2)C15—C161.382 (2)
C4—H40.95C16—C171.381 (2)
C5—C61.367 (2)C16—H160.95
C5—C101.410 (2)C17—H170.95
C5—H50.95
C2—N1—C9117.02 (12)N1—C9—C10123.15 (13)
C11—N2—C8127.57 (12)N1—C9—C8117.72 (12)
C11—N2—H2N116.2C10—C9—C8119.12 (13)
C8—N2—H2N116.2C5—C10—C4123.60 (13)
O3—N3—O2123.20 (12)C5—C10—C9119.48 (13)
O3—N3—C15118.58 (12)C4—C10—C9116.93 (14)
O2—N3—C15118.20 (12)O1—C11—N2123.60 (14)
N1—C2—C3124.36 (14)O1—C11—C12120.14 (13)
N1—C2—H2117.8N2—C11—C12116.24 (12)
C3—C2—H2117.8C17—C12—C13119.82 (13)
C4—C3—C2118.62 (14)C17—C12—C11115.68 (13)
C4—C3—H3120.7C13—C12—C11124.50 (13)
C2—C3—H3120.7C14—C13—C12120.28 (13)
C3—C4—C10119.91 (14)C14—C13—H13119.9
C3—C4—H4120.0C12—C13—H13119.9
C10—C4—H4120.0C15—C14—C13118.12 (13)
C6—C5—C10120.06 (13)C15—C14—H14120.9
C6—C5—H5120.0C13—C14—H14120.9
C10—C5—H5120.0C16—C15—C14122.82 (13)
C5—C6—C7121.27 (14)C16—C15—N3118.23 (13)
C5—C6—H6119.4C14—C15—N3118.94 (12)
C7—C6—H6119.4C17—C16—C15118.37 (13)
C8—C7—C6120.06 (13)C17—C16—H16120.8
C8—C7—H7120.0C15—C16—H16120.8
C6—C7—H7120.0C16—C17—C12120.56 (13)
C7—C8—N2125.63 (13)C16—C17—H17119.7
C7—C8—C9119.99 (12)C12—C17—H17119.7
N2—C8—C9114.38 (12)
C9—N1—C2—C3−0.1 (2)C8—C9—C10—C4179.81 (12)
N1—C2—C3—C40.2 (2)C8—N2—C11—O1−2.6 (2)
C2—C3—C4—C10−0.5 (2)C8—N2—C11—C12176.13 (12)
C10—C5—C6—C7−0.6 (2)O1—C11—C12—C1721.26 (19)
C5—C6—C7—C8−0.6 (2)N2—C11—C12—C17−157.50 (13)
C6—C7—C8—N2−178.40 (13)O1—C11—C12—C13−158.21 (14)
C6—C7—C8—C91.4 (2)N2—C11—C12—C1323.0 (2)
C11—N2—C8—C74.8 (2)C17—C12—C13—C140.9 (2)
C11—N2—C8—C9−174.98 (13)C11—C12—C13—C14−179.67 (13)
C2—N1—C9—C100.3 (2)C12—C13—C14—C150.7 (2)
C2—N1—C9—C8179.93 (12)C13—C14—C15—C16−2.1 (2)
C7—C8—C9—N1179.29 (12)C13—C14—C15—N3177.21 (12)
N2—C8—C9—N1−0.91 (19)O3—N3—C15—C16178.40 (13)
C7—C8—C9—C10−1.0 (2)O2—N3—C15—C16−0.28 (19)
N2—C8—C9—C10178.77 (12)O3—N3—C15—C14−0.90 (19)
C6—C5—C10—C4−178.98 (13)O2—N3—C15—C14−179.58 (13)
C6—C5—C10—C91.0 (2)C14—C15—C16—C171.7 (2)
C3—C4—C10—C5−179.42 (13)N3—C15—C16—C17−177.59 (12)
C3—C4—C10—C90.6 (2)C15—C16—C17—C120.0 (2)
N1—C9—C10—C5179.52 (12)C13—C12—C17—C16−1.3 (2)
C8—C9—C10—C5−0.1 (2)C11—C12—C17—C16179.23 (12)
N1—C9—C10—C4−0.5 (2)
D—H···AD—HH···AD···AD—H···A
C7—H7···O10.952.262.8672 (19)121
C14—H14···O1i0.952.343.2483 (18)160
C17—H17···O3ii0.952.383.3050 (18)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7⋯O10.952.262.8672 (19)121
C14—H14⋯O1i0.952.343.2483 (18)160
C17—H17⋯O3ii0.952.383.3050 (18)163

Symmetry codes: (i) ; (ii) .

  5 in total

1.  The multidrug resistance protein is photoaffinity labeled by a quinoline-based drug at multiple sites.

Authors:  R Daoud; J Desneves; L W Deady; L Tilley; R J Scheper; P Gros; E Georges
Journal:  Biochemistry       Date:  2000-05-23       Impact factor: 3.162

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  N-Tetrahydroquinolinyl, N-quinolinyl and N-isoquinolinyl biaryl carboxamides as antagonists of TRPV1.

Authors:  Susan M Westaway; Ying-Kit Chung; John B Davis; Vicky Holland; Jeffrey C Jerman; Stephen J Medhurst; Harshad K Rami; Geoffrey Stemp; Alexander J Stevens; Mervyn Thompson; Kim Y Winborn; James Wright
Journal:  Bioorg Med Chem Lett       Date:  2006-06-27       Impact factor: 2.823

4.  2-Nitro-N-(8-quinolyl)benzamide.

Authors:  Gang Lei; Lin-Hai Jing; Li Zhou
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-20

5.  3-Nitro-N-(8-quinol-yl)benzamide.

Authors:  Gang Lei; Lin-Hai Jing; Li Zhou
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-20
  5 in total

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