Literature DB >> 21581368

1,3-Di-4-pyrid-ylpropane-2-hydroxy-benzene-1,4-dicarboxylic acid (1/2).

Jian-Hua Qin, Er-Jun Hao, Jian-Ge Wang.   

Abstract

In the title compound, C(13)H(14)N(2)·2C(8)H(6)O(5), which crystallized in the monoclinic C2/c space group, the n class="Chemical">1,3-bis-(4-pyrid-yl)propane mol-ecules and 2-hydr-oxy-1,4-benzene-dicarboxylic acid mol-ecules are alternately linked by O-H⋯N and O-H⋯O hydrogen bonds into herringbone/zigzag chains.

Entities:  

Year:  2008        PMID: 21581368      PMCID: PMC2960043          DOI: 10.1107/S1600536808037835

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Bowers et al. (2005 ▶); Mukherjee et al. (2004 ▶). For the substitution of bromine for n class="Chemical">hydroxyl, see: Chen & Tong (2007 ▶); Zhang (2005 ▶).

Experimental

Crystal data

C13H14N2·2C8H6O5 M = 562.52 Monoclinic, a = 22.939 (11) Å b = 4.781 (2) Å c = 24.163 (11) Å β = 96.542 (6)° V = 2633 (2) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 291 (2) K 0.35 × 0.19 × 0.05 mm

Data collection

Bruker CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1997 ▶) T min = 0.963, T max = 0.994 9178 measured reflections 2444 independent reflections 1335 reflections with I > 2σ(I) R int = 0.049

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.173 S = 1.03 2444 reflections 187 parameters H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −0.18 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808037835/ww2129sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808037835/ww2129Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H14N2·2C8H6O5F000 = 1176
Mr = 562.52Dx = 1.419 Mg m3
Monoclinic, C2/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 1102 reflections
a = 22.939 (11) Åθ = 3.4–23.3º
b = 4.781 (2) ŵ = 0.11 mm1
c = 24.163 (11) ÅT = 291 (2) K
β = 96.542 (6)ºBlock, colorless
V = 2633 (2) Å30.35 × 0.19 × 0.05 mm
Z = 4
Bruker SMART CCD area-detector diffractometer2444 independent reflections
Radiation source: fine-focus sealed tube1335 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.049
T = 291(2) Kθmax = 25.5º
ω & φ scansθmin = 2.6º
Absorption correction: multi-scan(SADABS; Bruker, 1997)h = −27→27
Tmin = 0.963, Tmax = 0.994k = −5→5
9178 measured reflectionsl = −29→28
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.056H-atom parameters constrained
wR(F2) = 0.173  w = 1/[σ2(Fo2) + (0.0772P)2 + 1.353P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
2444 reflectionsΔρmax = 0.39 e Å3
187 parametersΔρmin = −0.18 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.38415 (11)1.0471 (6)0.32590 (9)0.0857 (9)
H10.35570.95160.31410.129*
O20.24082 (9)0.8169 (5)0.40221 (9)0.0642 (7)
H20.22030.69760.38520.096*
O30.29118 (9)0.7716 (5)0.32941 (9)0.0695 (7)
O40.43663 (9)1.8252 (5)0.51792 (9)0.0666 (7)
H40.46241.94000.52740.100*
O50.48854 (9)1.7794 (5)0.44642 (10)0.0679 (7)
N10.17662 (11)0.4242 (5)0.35544 (11)0.0516 (7)
C10.32537 (12)1.0947 (6)0.40090 (12)0.0467 (7)
C20.37382 (13)1.1721 (6)0.37430 (13)0.0539 (8)
C30.41262 (13)1.3722 (6)0.39812 (13)0.0568 (8)
H30.44511.42150.38050.068*
C40.40338 (12)1.4989 (6)0.44770 (12)0.0470 (7)
C50.35515 (13)1.4263 (6)0.47459 (13)0.0535 (8)
H50.34861.51250.50780.064*
C60.31687 (13)1.2222 (6)0.45088 (13)0.0551 (8)
H60.28491.17020.46900.066*
C70.28337 (13)0.8782 (6)0.37506 (14)0.0527 (8)
C80.44604 (13)1.7142 (6)0.47143 (13)0.0493 (8)
C90.18299 (12)0.3070 (7)0.30666 (13)0.0534 (8)
H90.21470.35840.28810.064*
C100.14366 (12)0.1103 (6)0.28276 (12)0.0516 (8)
H100.14930.02980.24880.062*
C110.09577 (12)0.0334 (6)0.30954 (12)0.0449 (7)
C120.09152 (13)0.1551 (7)0.36110 (13)0.0570 (8)
H120.06090.10560.38130.068*
C130.13223 (14)0.3479 (7)0.38230 (13)0.0575 (8)
H130.12850.42770.41680.069*
C140.04828 (11)−0.1557 (6)0.28235 (12)0.0499 (8)
H14A0.0318−0.26510.31060.060*
H14B0.0648−0.28370.25720.060*
C150.00000.0194 (8)0.25000.0498 (11)
H15A0.01760.13910.22410.060*0.50
H15B−0.01760.13910.27590.060*0.50
U11U22U33U12U13U23
O10.109 (2)0.092 (2)0.0608 (15)−0.0379 (16)0.0301 (15)−0.0327 (13)
O20.0605 (14)0.0580 (14)0.0726 (15)−0.0154 (11)0.0015 (12)−0.0059 (12)
O30.0756 (15)0.0679 (16)0.0653 (15)−0.0160 (12)0.0091 (12)−0.0159 (12)
O40.0658 (14)0.0597 (14)0.0748 (16)−0.0169 (12)0.0102 (12)−0.0179 (13)
O50.0593 (14)0.0617 (15)0.0858 (16)−0.0161 (12)0.0222 (12)−0.0191 (12)
N10.0513 (15)0.0481 (15)0.0543 (16)−0.0003 (12)0.0012 (13)0.0053 (13)
C10.0496 (18)0.0359 (16)0.0527 (18)−0.0006 (13)−0.0027 (14)−0.0012 (14)
C20.0597 (19)0.0483 (18)0.0543 (19)−0.0076 (16)0.0086 (15)−0.0058 (16)
C30.059 (2)0.0497 (19)0.063 (2)−0.0116 (16)0.0148 (16)−0.0048 (16)
C40.0456 (17)0.0362 (17)0.0578 (19)0.0010 (13)−0.0004 (15)0.0018 (15)
C50.0593 (19)0.0459 (18)0.0552 (19)−0.0024 (16)0.0061 (15)−0.0058 (15)
C60.0499 (18)0.0527 (19)0.063 (2)−0.0059 (16)0.0087 (15)0.0009 (17)
C70.0475 (18)0.0449 (18)0.065 (2)−0.0004 (14)0.0028 (16)0.0041 (17)
C80.0513 (18)0.0350 (16)0.061 (2)0.0017 (14)0.0033 (16)−0.0043 (15)
C90.0450 (17)0.055 (2)0.061 (2)−0.0051 (15)0.0094 (15)0.0089 (17)
C100.0518 (18)0.0529 (19)0.0509 (18)0.0026 (15)0.0093 (15)0.0022 (15)
C110.0465 (17)0.0364 (16)0.0508 (17)0.0044 (13)0.0008 (14)0.0045 (14)
C120.0504 (18)0.064 (2)0.059 (2)−0.0045 (16)0.0137 (15)−0.0006 (17)
C130.062 (2)0.058 (2)0.0532 (19)−0.0054 (17)0.0070 (16)−0.0081 (16)
C140.0467 (17)0.0411 (17)0.0607 (19)−0.0015 (14)0.0010 (14)0.0004 (15)
C150.049 (2)0.038 (2)0.061 (3)0.0000.002 (2)0.000
O1—C21.358 (3)C5—C61.391 (4)
O1—H10.8200C5—H50.9300
O2—C71.271 (3)C6—H60.9300
O2—H20.8200C9—C101.383 (4)
O3—C71.246 (4)C9—H90.9300
O4—C81.283 (3)C10—C111.387 (4)
O4—H40.8200C10—H100.9300
O5—C81.244 (3)C11—C121.389 (4)
N1—C131.320 (4)C11—C141.507 (4)
N1—C91.328 (4)C12—C131.369 (4)
C1—C61.386 (4)C12—H120.9300
C1—C21.396 (4)C13—H130.9300
C1—C71.501 (4)C14—C151.530 (3)
C2—C31.386 (4)C14—H14A0.9700
C3—C41.380 (4)C14—H14B0.9700
C3—H30.9300C15—C14i1.530 (3)
C4—C51.389 (4)C15—H15A0.9700
C4—C81.489 (4)C15—H15B0.9700
C2—O1—H1109.5N1—C9—C10121.7 (3)
C7—O2—H2109.5N1—C9—H9119.2
C8—O4—H4109.5C10—C9—H9119.2
C13—N1—C9119.3 (3)C9—C10—C11120.0 (3)
C6—C1—C2118.9 (3)C9—C10—H10120.0
C6—C1—C7121.2 (3)C11—C10—H10120.0
C2—C1—C7119.9 (3)C10—C11—C12116.6 (3)
O1—C2—C3119.6 (3)C10—C11—C14121.8 (3)
O1—C2—C1120.4 (3)C12—C11—C14121.4 (3)
C3—C2—C1119.9 (3)C13—C12—C11120.2 (3)
C4—C3—C2120.6 (3)C13—C12—H12119.9
C4—C3—H3119.7C11—C12—H12119.9
C2—C3—H3119.7N1—C13—C12122.3 (3)
C3—C4—C5120.4 (3)N1—C13—H13118.9
C3—C4—C8118.6 (3)C12—C13—H13118.9
C5—C4—C8121.0 (3)C11—C14—C15109.9 (2)
C4—C5—C6118.8 (3)C11—C14—H14A109.7
C4—C5—H5120.6C15—C14—H14A109.7
C6—C5—H5120.6C11—C14—H14B109.7
C1—C6—C5121.5 (3)C15—C14—H14B109.7
C1—C6—H6119.3H14A—C14—H14B108.2
C5—C6—H6119.3C14—C15—C14i113.7 (3)
O3—C7—O2124.0 (3)C14—C15—H15A108.8
O3—C7—C1120.0 (3)C14i—C15—H15A108.8
O2—C7—C1116.0 (3)C14—C15—H15B108.8
O5—C8—O4122.8 (3)C14i—C15—H15B108.8
O5—C8—C4120.2 (3)H15A—C15—H15B107.7
O4—C8—C4117.0 (3)
C6—C1—C2—O1178.6 (3)C2—C1—C7—O2179.2 (3)
C7—C1—C2—O1−1.8 (4)C3—C4—C8—O50.9 (4)
C6—C1—C2—C30.4 (4)C5—C4—C8—O5−179.0 (3)
C7—C1—C2—C3180.0 (3)C3—C4—C8—O4−179.1 (3)
O1—C2—C3—C4−179.1 (3)C5—C4—C8—O41.0 (4)
C1—C2—C3—C4−0.8 (5)C13—N1—C9—C101.2 (4)
C2—C3—C4—C50.3 (5)N1—C9—C10—C110.7 (4)
C2—C3—C4—C8−179.5 (3)C9—C10—C11—C12−2.3 (4)
C3—C4—C5—C60.6 (4)C9—C10—C11—C14173.2 (3)
C8—C4—C5—C6−179.5 (3)C10—C11—C12—C132.2 (4)
C2—C1—C6—C50.6 (5)C14—C11—C12—C13−173.4 (3)
C7—C1—C6—C5−179.0 (3)C9—N1—C13—C12−1.4 (5)
C4—C5—C6—C1−1.1 (4)C11—C12—C13—N1−0.3 (5)
C6—C1—C7—O3178.2 (3)C10—C11—C14—C15−90.2 (3)
C2—C1—C7—O3−1.4 (4)C12—C11—C14—C1585.1 (3)
C6—C1—C7—O2−1.3 (4)C11—C14—C15—C14i176.1 (3)
D—H···AD—HH···AD···AD—H···A
O4—H4···O5ii0.821.822.631 (3)172
O2—H2···N10.821.752.568 (3)174
O1—H1···O30.821.792.516 (3)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4⋯O5i0.821.822.631 (3)172
O2—H2⋯N10.821.752.568 (3)174
O1—H1⋯O30.821.792.516 (3)147

Symmetry code: (i) .

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