Literature DB >> 21581365

2-(1,3-Dioxoisoindolin-2-yl)ethyl 4-methyl-benzene-sulfonate.

Mark Daniel Bartholomä1, Wayne Ouellette, Jon Zubieta.   

Abstract

In the title mol-ecule, C(17)H(15)NO(5)S, the dihedral angle between the essentially planar atoms of the tosyl moiety (the S atom and the seven tolyl C atoms) and the phthalimide moiety is 6.089 (3)°. The mol-ecule is folded about the ethyl-ene bridge, adopting a staggered conformation such that the benzene ring of the tosyl group and the five-membered ring of the phthalimide moiety have a face-to-face orientation with a centroid-to-centroid separation of 3.7454 (12) Å. The crystal structure is stabilized by weak inter-molecular π-π inter-actions between symmetry-related five-membered rings of the phthalimide groups, with a centroid-to-centroid distance of 3.3867 (11) Å. The compound is used for the attachment of a suitable chelate functionality for radiolabeling purposes.

Entities:  

Year:  2008        PMID: 21581365      PMCID: PMC2960049          DOI: 10.1107/S1600536808037951

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Eriksson et al. (2002 ▶); Arner & Eriksson (1995 ▶); Bello (1974 ▶); Wei et al. (2005 ▶); Welin et al. (2004 ▶). For reference bond distances, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C17H15NO5S M = 345.36 Monoclinic, a = 13.6817 (13) Å b = 12.5642 (12) Å c = 19.3194 (19) Å β = 107.121 (2)° V = 3173.8 (5) Å3 Z = 8 Mo Kα radiation μ = 0.23 mm−1 T = 90 (2) K 0.40 × 0.35 × 0.30 mm

Data collection

Bruker APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Brucker, 2007 ▶) T min = 0.913, T max = 0.934 16184 measured reflections 3865 independent reflections 3773 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.122 S = 1.25 3865 reflections 218 parameters H-atom parameters constrained Δρmax = 0.48 e Å−3 Δρmin = −0.41 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: CrystalMaker (Palmer, 2006 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808037951/lh2734sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808037951/lh2734Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H15NO5SF000 = 1440
Mr = 345.36Dx = 1.446 Mg m3
Monoclinic, C2/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -C2ycCell parameters from 9534 reflections
a = 13.6817 (13) Åθ = 2.2–28.3º
b = 12.5642 (12) ŵ = 0.23 mm1
c = 19.3194 (19) ÅT = 90 (2) K
β = 107.121 (2)ºBlock, colourless
V = 3173.8 (5) Å30.40 × 0.35 × 0.30 mm
Z = 8
Bruker APEX CCD area-detector diffractometer3865 independent reflections
Monochromator: graphite3773 reflections with I > 2σ(I)
Detector resolution: 512 pixels mm-1Rint = 0.020
T = 90(2) Kθmax = 28.1º
φ and ω scansθmin = 2.2º
Absorption correction: multi-scan(SADABS in SHELXL97; Sheldrick, 2008)h = −18→18
Tmin = 0.913, Tmax = 0.934k = −16→16
16184 measured reflectionsl = −25→25
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.052H-atom parameters constrained
wR(F2) = 0.122  w = 1/[σ2(Fo2) + (0.0413P)2 + 6.2623P] where P = (Fo2 + 2Fc2)/3
S = 1.25(Δ/σ)max = 0.001
3865 reflectionsΔρmax = 0.48 e Å3
218 parametersΔρmin = −0.41 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.24768 (3)−0.05689 (4)1.04905 (2)0.01844 (13)
O10.27012 (11)−0.16681 (11)1.06516 (7)0.0245 (3)
O20.26255 (12)0.01842 (12)1.10672 (7)0.0269 (3)
O30.13136 (10)−0.04377 (10)1.00548 (7)0.0195 (3)
O40.12124 (10)−0.09920 (11)0.78928 (7)0.0214 (3)
O50.01573 (11)0.16581 (11)0.91348 (8)0.0270 (3)
N10.05468 (11)0.01454 (12)0.85773 (8)0.0179 (3)
C10.31279 (13)−0.01266 (16)0.98842 (10)0.0193 (4)
C20.35460 (15)−0.08611 (17)0.95184 (11)0.0243 (4)
H20.3486−0.16030.95920.029*
C30.40571 (15)−0.04904 (19)0.90397 (11)0.0287 (4)
H30.4350−0.09880.87880.034*
C40.41464 (15)0.0590 (2)0.89231 (11)0.0294 (5)
C50.46884 (19)0.0980 (2)0.83979 (13)0.0425 (6)
H5A0.50030.03760.82230.064*
H5B0.52200.14910.86410.064*
H5C0.41960.13280.79870.064*
C60.37176 (16)0.13104 (18)0.93012 (12)0.0286 (4)
H60.37730.20520.92260.034*
C70.32129 (15)0.09635 (16)0.97844 (11)0.0236 (4)
H70.29300.14601.00430.028*
C80.10819 (13)−0.01011 (15)0.80845 (9)0.0169 (3)
C90.14229 (13)0.09383 (15)0.78653 (9)0.0180 (3)
C100.19546 (15)0.11612 (16)0.73773 (10)0.0218 (4)
H100.21580.06120.71110.026*
C110.21815 (16)0.22272 (17)0.72909 (11)0.0270 (4)
H110.25470.24100.69590.032*
C120.18807 (17)0.30273 (17)0.76836 (11)0.0276 (4)
H120.20550.37450.76200.033*
C130.13283 (15)0.27955 (16)0.81683 (10)0.0232 (4)
H130.11150.33410.84320.028*
C140.11061 (13)0.17402 (15)0.82475 (9)0.0182 (3)
C150.05463 (14)0.12411 (14)0.87179 (10)0.0186 (4)
C160.00646 (14)−0.06579 (15)0.89112 (10)0.0191 (4)
H16A−0.0302−0.11750.85380.023*
H16B−0.0443−0.03120.91120.023*
C170.08415 (14)−0.12402 (14)0.95089 (10)0.0191 (4)
H17A0.0505−0.17970.97200.023*
H17B0.1364−0.15810.93200.023*
U11U22U33U12U13U23
S10.0222 (2)0.0191 (2)0.0151 (2)−0.00308 (16)0.00727 (16)−0.00143 (16)
O10.0290 (7)0.0227 (7)0.0213 (7)−0.0010 (6)0.0067 (5)0.0018 (5)
O20.0362 (8)0.0282 (7)0.0185 (6)−0.0083 (6)0.0113 (6)−0.0065 (6)
O30.0209 (6)0.0188 (6)0.0209 (6)−0.0023 (5)0.0095 (5)−0.0037 (5)
O40.0227 (7)0.0198 (6)0.0233 (6)0.0022 (5)0.0094 (5)−0.0020 (5)
O50.0325 (8)0.0237 (7)0.0304 (7)0.0001 (6)0.0180 (6)−0.0042 (6)
N10.0182 (7)0.0181 (7)0.0191 (7)0.0008 (6)0.0083 (6)0.0005 (6)
C10.0169 (8)0.0260 (9)0.0151 (8)−0.0037 (7)0.0048 (6)0.0001 (7)
C20.0222 (9)0.0288 (10)0.0223 (9)−0.0010 (8)0.0071 (7)−0.0032 (8)
C30.0201 (9)0.0450 (13)0.0220 (9)0.0003 (8)0.0079 (7)−0.0044 (9)
C40.0169 (9)0.0493 (13)0.0222 (9)−0.0054 (8)0.0061 (7)0.0040 (9)
C50.0297 (11)0.0686 (18)0.0340 (12)−0.0074 (11)0.0167 (10)0.0104 (12)
C60.0242 (10)0.0316 (11)0.0303 (10)−0.0067 (8)0.0085 (8)0.0063 (8)
C70.0216 (9)0.0248 (10)0.0244 (9)−0.0022 (7)0.0069 (7)−0.0003 (7)
C80.0137 (7)0.0219 (9)0.0150 (8)0.0014 (6)0.0042 (6)0.0013 (6)
C90.0158 (8)0.0202 (8)0.0165 (8)−0.0012 (6)0.0026 (6)−0.0005 (7)
C100.0225 (9)0.0267 (10)0.0171 (8)−0.0034 (7)0.0071 (7)−0.0018 (7)
C110.0300 (10)0.0321 (11)0.0207 (9)−0.0095 (8)0.0105 (8)−0.0003 (8)
C120.0351 (11)0.0227 (9)0.0248 (9)−0.0103 (8)0.0084 (8)−0.0005 (8)
C130.0269 (10)0.0211 (9)0.0212 (9)−0.0037 (7)0.0066 (7)−0.0033 (7)
C140.0167 (8)0.0212 (9)0.0163 (8)−0.0017 (7)0.0045 (6)−0.0019 (7)
C150.0181 (8)0.0178 (8)0.0197 (8)0.0001 (6)0.0053 (7)−0.0015 (7)
C160.0182 (8)0.0196 (8)0.0216 (9)−0.0026 (7)0.0092 (7)0.0002 (7)
C170.0219 (8)0.0169 (8)0.0190 (8)−0.0040 (7)0.0068 (7)−0.0025 (7)
S1—O11.4290 (15)C6—C71.385 (3)
S1—O21.4299 (14)C6—H60.9500
S1—O31.5747 (14)C7—H70.9500
S1—C11.7574 (18)C8—C91.489 (3)
O3—C171.465 (2)C9—C101.379 (3)
O4—C81.209 (2)C9—C141.392 (3)
O5—C151.208 (2)C10—C111.396 (3)
N1—C81.396 (2)C10—H100.9500
N1—C151.403 (2)C11—C121.393 (3)
N1—C161.456 (2)C11—H110.9500
C1—C21.384 (3)C12—C131.396 (3)
C1—C71.393 (3)C12—H120.9500
C2—C31.394 (3)C13—C141.379 (3)
C2—H20.9500C13—H130.9500
C3—C41.387 (3)C14—C151.488 (2)
C3—H30.9500C16—C171.509 (3)
C4—C61.396 (3)C16—H16A0.9900
C4—C51.504 (3)C16—H16B0.9900
C5—H5A0.9800C17—H17A0.9900
C5—H5B0.9800C17—H17B0.9900
C5—H5C0.9800
O1—S1—O2119.84 (9)O4—C8—C9129.65 (17)
O1—S1—O3109.64 (8)N1—C8—C9105.69 (15)
O2—S1—O3103.69 (8)C10—C9—C14121.68 (18)
O1—S1—C1109.41 (9)C10—C9—C8130.16 (17)
O2—S1—C1109.05 (9)C14—C9—C8108.15 (16)
O3—S1—C1103.97 (8)C9—C10—C11117.22 (18)
C17—O3—S1118.36 (11)C9—C10—H10121.4
C8—N1—C15112.32 (15)C11—C10—H10121.4
C8—N1—C16123.05 (15)C12—C11—C10121.04 (18)
C15—N1—C16124.62 (15)C12—C11—H11119.5
C2—C1—C7121.40 (18)C10—C11—H11119.5
C2—C1—S1119.74 (15)C11—C12—C13121.33 (19)
C7—C1—S1118.85 (15)C11—C12—H12119.3
C1—C2—C3118.6 (2)C13—C12—H12119.3
C1—C2—H2120.7C14—C13—C12117.10 (18)
C3—C2—H2120.7C14—C13—H13121.5
C4—C3—C2121.3 (2)C12—C13—H13121.5
C4—C3—H3119.3C13—C14—C9121.61 (17)
C2—C3—H3119.3C13—C14—C15130.00 (17)
C3—C4—C6118.61 (19)C9—C14—C15108.39 (16)
C3—C4—C5120.9 (2)O5—C15—N1125.45 (17)
C6—C4—C5120.5 (2)O5—C15—C14129.15 (17)
C4—C5—H5A109.5N1—C15—C14105.40 (15)
C4—C5—H5B109.5N1—C16—C17111.48 (15)
H5A—C5—H5B109.5N1—C16—H16A109.3
C4—C5—H5C109.5C17—C16—H16A109.3
H5A—C5—H5C109.5N1—C16—H16B109.3
H5B—C5—H5C109.5C17—C16—H16B109.3
C7—C6—C4121.2 (2)H16A—C16—H16B108.0
C7—C6—H6119.4O3—C17—C16106.23 (14)
C4—C6—H6119.4O3—C17—H17A110.5
C6—C7—C1118.77 (19)C16—C17—H17A110.5
C6—C7—H7120.6O3—C17—H17B110.5
C1—C7—H7120.6C16—C17—H17B110.5
O4—C8—N1124.67 (17)H17A—C17—H17B108.7
O1—S1—O3—C17−38.67 (14)O4—C8—C9—C14−178.67 (18)
O2—S1—O3—C17−167.78 (12)N1—C8—C9—C141.69 (19)
C1—S1—O3—C1778.22 (14)C14—C9—C10—C111.2 (3)
O1—S1—C1—C214.61 (18)C8—C9—C10—C11−179.09 (18)
O2—S1—C1—C2147.43 (15)C9—C10—C11—C120.0 (3)
O3—S1—C1—C2−102.45 (16)C10—C11—C12—C13−1.0 (3)
O1—S1—C1—C7−165.23 (15)C11—C12—C13—C140.8 (3)
O2—S1—C1—C7−32.41 (18)C12—C13—C14—C90.4 (3)
O3—S1—C1—C777.71 (16)C12—C13—C14—C15179.45 (18)
C7—C1—C2—C3−0.3 (3)C10—C9—C14—C13−1.4 (3)
S1—C1—C2—C3179.90 (15)C8—C9—C14—C13178.79 (17)
C1—C2—C3—C4−0.4 (3)C10—C9—C14—C15179.32 (16)
C2—C3—C4—C60.5 (3)C8—C9—C14—C15−0.45 (19)
C2—C3—C4—C5−179.22 (19)C8—N1—C15—O5−178.31 (18)
C3—C4—C6—C70.1 (3)C16—N1—C15—O50.7 (3)
C5—C4—C6—C7179.75 (19)C8—N1—C15—C142.1 (2)
C4—C6—C7—C1−0.7 (3)C16—N1—C15—C14−178.90 (16)
C2—C1—C7—C60.8 (3)C13—C14—C15—O50.3 (3)
S1—C1—C7—C6−179.38 (15)C9—C14—C15—O5179.49 (19)
C15—N1—C8—O4177.95 (17)C13—C14—C15—N1179.90 (19)
C16—N1—C8—O4−1.1 (3)C9—C14—C15—N1−0.95 (19)
C15—N1—C8—C9−2.38 (19)C8—N1—C16—C1776.8 (2)
C16—N1—C8—C9178.62 (15)C15—N1—C16—C17−102.06 (19)
O4—C8—C9—C101.6 (3)S1—O3—C17—C16−146.02 (12)
N1—C8—C9—C10−178.05 (18)N1—C16—C17—O361.83 (18)
  6 in total

Review 1.  Structure and function of cellular deoxyribonucleoside kinases.

Authors:  S Eriksson; B Munch-Petersen; K Johansson; H Eklund
Journal:  Cell Mol Life Sci       Date:  2002-08       Impact factor: 9.261

2.  Structures of thymidine kinase 1 of human and mycoplasmic origin.

Authors:  Martin Welin; Urszula Kosinska; Nils-Egil Mikkelsen; Cecilia Carnrot; Chunying Zhu; Liya Wang; Staffan Eriksson; Birgitte Munch-Petersen; Hans Eklund
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-20       Impact factor: 11.205

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Regulation of thymidine kinase synthesis in human cells.

Authors:  L J Bello
Journal:  Exp Cell Res       Date:  1974-12       Impact factor: 3.905

5.  Rhenium tricarbonyl core complexes of thymidine and uridine derivatives.

Authors:  Lihui Wei; John Babich; William C Eckelman; Jon Zubieta
Journal:  Inorg Chem       Date:  2005-04-04       Impact factor: 5.165

Review 6.  Mammalian deoxyribonucleoside kinases.

Authors:  E S Arnér; S Eriksson
Journal:  Pharmacol Ther       Date:  1995       Impact factor: 12.310

  6 in total

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