Literature DB >> 21581319

Oxonium ammonio-(cyclo-prop-yl)methyl-enebis(hydrogenphospho-nate) monohydrate.

V V Bon1, A V Dudko, A N Kozachkova, V I Pekhnyo.   

Abstract

The title compound, H(3)O(+)·C(4)H(10)NO(6)P(2) (-)·H(2)O, was obtained from the reaction of cyclo-propane-carbonitrile with PCl(3), followed by dropwise addition of water. The asymmetric unit comprises an oxonium cation, a zwitterionic monoanion containing a positively charged ammonium group and two negatively charged phospho-nic acid residues and a water mol-ecule of crystallization. The hydroxonium cation and water mol-ecule are hydrogen bonded to the anion and further N-H⋯O and O-H⋯O bonds create a three-dimensional network.

Entities:  

Year:  2008        PMID: 21581319      PMCID: PMC2960100          DOI: 10.1107/S1600536808037094

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Diphospho­nic acids are efficient drugs for the prevention of calcification and the inhibition bone resorption (Tromelin et al., 1986 ▶, Matczak-Jon & Videnova-Adrabinska, 2005 ▶) and are used in the treatment of Pagets disease, osteoporosis and tumoral osteolysis (Szabo et al., 2002 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

H3OC4H10NO6P2 −·H2O M = 267.11 Monoclinic, a = 12.5054 (8) Å b = 5.6169 (4) Å c = 14.3296 (8) Å β = 94.973 (4)° V = 1002.74 (11) Å3 Z = 4 Mo Kα radiation μ = 0.46 mm−1 T = 100 (2) K 0.56 × 0.07 × 0.06 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.782, T max = 0.973 14938 measured reflections 2076 independent reflections 1411 reflections with I > 2σ(I) R int = 0.117

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.111 S = 1.01 2076 reflections 166 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.64 e Å−3 Δρmin = −0.48 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808037094/fj2162sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808037094/fj2162Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
H3O+·C4H10NO6P2·H2OF000 = 560
Mr = 267.11Dx = 1.769 Mg m3
Monoclinic, P21/nMelting point: 493 K
Hall symbol: -P 2ynMo Kα radiation λ = 0.71073 Å
a = 12.5054 (8) ÅCell parameters from 1935 reflections
b = 5.6169 (4) Åθ = 2.3–26.4º
c = 14.3296 (8) ŵ = 0.46 mm1
β = 94.973 (4)ºT = 100 (2) K
V = 1002.74 (11) Å3Needle, colourless
Z = 40.56 × 0.07 × 0.06 mm
Bruker SMART APEXII CCD diffractometer2076 independent reflections
Radiation source: fine-focus sealed tube1411 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.117
T = 100(2) Kθmax = 26.6º
φ and ω scansθmin = 2.1º
Absorption correction: multi-scan(SADABS; Bruker, 2005)h = −15→15
Tmin = 0.782, Tmax = 0.973k = −7→7
14938 measured reflectionsl = −17→18
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.111  w = 1/[σ2(Fo2) + (0.0546P)2] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
2076 reflectionsΔρmax = 0.64 e Å3
166 parametersΔρmin = −0.48 e Å3
6 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.39124 (6)1.00254 (15)0.88098 (5)0.0097 (2)
P20.42829 (7)0.97159 (15)0.67003 (6)0.0107 (2)
C10.4541 (3)0.8406 (5)0.7872 (2)0.0098 (7)
C20.5754 (3)0.8349 (6)0.8120 (2)0.0122 (7)
H2A0.60980.99510.80900.015*
C30.6295 (3)0.6770 (6)0.8865 (2)0.0161 (8)
H3A0.68970.74490.92750.019*
H3B0.58430.56150.91750.019*
C40.6466 (3)0.6358 (7)0.7858 (2)0.0186 (8)
H4A0.61200.49470.75460.022*
H4B0.71740.67800.76460.022*
N10.4080 (2)0.5913 (5)0.7841 (2)0.0098 (6)
H1A0.436 (3)0.499 (6)0.743 (3)0.015*
H1B0.341 (2)0.588 (6)0.778 (2)0.015*
H1C0.427 (3)0.513 (6)0.835 (3)0.015*
O10.46292 (18)1.2100 (4)0.91003 (15)0.0121 (5)
O20.38814 (18)0.8132 (4)0.95991 (15)0.0121 (5)
O30.27864 (18)1.0669 (4)0.84573 (15)0.0138 (5)
O40.46954 (18)1.2202 (4)0.67350 (15)0.0130 (5)
O50.48317 (18)0.8051 (4)0.60598 (15)0.0137 (5)
O60.30505 (19)0.9707 (4)0.64379 (16)0.0133 (5)
O70.3973 (2)0.6970 (5)0.45230 (18)0.0263 (7)
H2O0.434 (3)0.810 (7)1.000 (2)0.032*
H6O0.282 (3)0.835 (8)0.643 (3)0.032*
H71O0.438 (3)0.709 (7)0.411 (2)0.032*
H72O0.378 (3)0.558 (5)0.448 (3)0.032*
H73O0.432 (3)0.742 (7)0.522 (3)0.032*
O80.1988 (2)0.7952 (5)1.0595 (2)0.0285 (7)
H81O0.163 (3)0.679 (6)1.066 (3)0.034*
H82O0.247 (3)0.754 (7)1.028 (3)0.034*
U11U22U33U12U13U23
P10.0087 (5)0.0105 (4)0.0095 (4)0.0000 (4)−0.0012 (3)−0.0002 (3)
P20.0116 (5)0.0105 (5)0.0096 (4)−0.0001 (4)−0.0008 (3)−0.0003 (3)
C10.0068 (16)0.0092 (17)0.0126 (16)−0.0009 (13)−0.0029 (13)0.0001 (13)
C20.0071 (17)0.0149 (18)0.0143 (17)−0.0033 (14)0.0004 (13)−0.0038 (13)
C30.0088 (18)0.020 (2)0.0183 (18)−0.0005 (15)−0.0028 (14)0.0006 (15)
C40.0114 (19)0.024 (2)0.0200 (19)0.0026 (15)0.0017 (15)−0.0064 (15)
N10.0075 (15)0.0090 (14)0.0127 (14)0.0008 (12)0.0004 (12)0.0001 (12)
O10.0133 (12)0.0111 (12)0.0112 (11)0.0008 (10)−0.0018 (9)−0.0009 (9)
O20.0114 (13)0.0148 (12)0.0098 (11)−0.0003 (10)−0.0017 (9)0.0006 (10)
O30.0115 (12)0.0161 (13)0.0136 (12)0.0022 (10)−0.0010 (9)−0.0030 (9)
O40.0149 (13)0.0148 (13)0.0094 (11)−0.0003 (10)0.0011 (9)0.0009 (9)
O50.0134 (12)0.0140 (12)0.0133 (12)0.0033 (10)−0.0011 (9)−0.0012 (10)
O60.0135 (13)0.0112 (12)0.0145 (11)−0.0009 (10)−0.0028 (9)−0.0004 (10)
O70.0203 (16)0.0480 (18)0.0108 (13)−0.0117 (14)0.0024 (11)−0.0047 (14)
O80.0180 (16)0.0335 (17)0.0356 (17)0.0026 (13)0.0110 (13)0.0120 (14)
P1—O31.498 (2)C3—H3B0.9900
P1—O11.507 (2)C4—H4A0.9900
P1—O21.555 (2)C4—H4B0.9900
P1—C11.853 (3)N1—H1A0.88 (4)
P2—O41.488 (2)N1—H1B0.84 (3)
P2—O51.516 (2)N1—H1C0.86 (4)
P2—O61.554 (2)O2—H2O0.78 (3)
P2—C11.835 (3)O5—H73O1.35 (4)
C1—N11.514 (4)O6—H6O0.81 (4)
C1—C21.528 (4)O7—H71O0.81 (2)
C2—C41.498 (5)O7—H72O0.82 (3)
C2—C31.503 (5)O7—H73O1.09 (4)
C2—H2A1.0000O8—H81O0.80 (3)
C3—C41.496 (5)O8—H82O0.82 (3)
C3—H3A0.9900
O3—P1—O1115.19 (13)C4—C3—H3A117.8
O3—P1—O2109.16 (13)C2—C3—H3A117.8
O1—P1—O2112.32 (12)C4—C3—H3B117.8
O3—P1—C1108.60 (13)C2—C3—H3B117.8
O1—P1—C1107.49 (14)H3A—C3—H3B114.9
O2—P1—C1103.34 (14)C3—C4—C260.3 (2)
O4—P2—O5115.18 (13)C3—C4—H4A117.7
O4—P2—O6110.17 (13)C2—C4—H4A117.7
O5—P2—O6110.06 (13)C3—C4—H4B117.7
O4—P2—C1108.21 (13)C2—C4—H4B117.7
O5—P2—C1104.70 (13)H4A—C4—H4B114.9
O6—P2—C1108.16 (14)C1—N1—H1A113 (2)
N1—C1—C2110.8 (3)C1—N1—H1B113 (3)
N1—C1—P2107.9 (2)H1A—N1—H1B112 (3)
C2—C1—P2108.3 (2)C1—N1—H1C111 (2)
N1—C1—P1106.9 (2)H1A—N1—H1C100 (3)
C2—C1—P1108.4 (2)H1B—N1—H1C106 (3)
P2—C1—P1114.51 (17)P1—O2—H2O119 (3)
C4—C2—C359.8 (2)P2—O5—H73O119.6 (16)
C4—C2—C1123.8 (3)P2—O6—H6O110 (3)
C3—C2—C1123.7 (3)H71O—O7—H72O103 (4)
C4—C2—H2A113.2H71O—O7—H73O115 (4)
C3—C2—H2A113.2H72O—O7—H73O112 (4)
C1—C2—H2A113.2H81O—O8—H82O106 (4)
C4—C3—C259.9 (2)
O4—P2—C1—N1177.8 (2)O1—P1—C1—C239.6 (2)
O5—P2—C1—N1−58.9 (2)O2—P1—C1—C2−79.4 (2)
O6—P2—C1—N158.4 (2)O3—P1—C1—P243.8 (2)
O4—P2—C1—C2−62.2 (2)O1—P1—C1—P2−81.46 (18)
O5—P2—C1—C261.1 (2)O2—P1—C1—P2159.60 (16)
O6—P2—C1—C2178.4 (2)N1—C1—C2—C431.4 (4)
O4—P2—C1—P158.9 (2)P2—C1—C2—C4−86.8 (3)
O5—P2—C1—P1−177.81 (16)P1—C1—C2—C4148.4 (3)
O6—P2—C1—P1−60.5 (2)N1—C1—C2—C3−42.3 (4)
O3—P1—C1—N1−75.7 (2)P2—C1—C2—C3−160.5 (3)
O1—P1—C1—N1159.06 (19)P1—C1—C2—C374.7 (3)
O2—P1—C1—N140.1 (2)C1—C2—C3—C4112.7 (4)
O3—P1—C1—C2164.8 (2)C1—C2—C4—C3−112.5 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O4i0.88 (4)1.92 (4)2.767 (4)161 (3)
N1—H1B···O3ii0.84 (3)2.23 (3)2.859 (4)133 (3)
N1—H1B···O6ii0.84 (3)2.32 (3)3.017 (4)142 (3)
N1—H1C···O1i0.86 (4)2.05 (4)2.846 (4)154 (3)
O2—H2O···O1iii0.78 (3)1.75 (3)2.521 (3)178 (5)
O7—H73O···O51.09 (4)1.35 (4)2.441 (3)175 (3)
O6—H6O···O3ii0.81 (4)1.70 (4)2.508 (3)171 (4)
O7—H71O···O4iv0.81 (2)1.79 (3)2.600 (3)171 (4)
O7—H72O···O8ii0.82 (3)1.76 (3)2.555 (4)164 (4)
O8—H82O···O20.82 (3)2.12 (3)2.871 (3)153 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O4i0.88 (4)1.92 (4)2.767 (4)161 (3)
N1—H1B⋯O3ii0.84 (3)2.23 (3)2.859 (4)133 (3)
N1—H1B⋯O6ii0.84 (3)2.32 (3)3.017 (4)142 (3)
N1—H1C⋯O1i0.86 (4)2.05 (4)2.846 (4)154 (3)
O2—H2O⋯O1iii0.78 (3)1.75 (3)2.521 (3)178 (5)
O6—H6O⋯O3ii0.81 (4)1.70 (4)2.508 (3)171 (4)
O7—H71O⋯O4iv0.81 (2)1.79 (3)2.600 (3)171 (4)
O7—H72O⋯O8ii0.82 (3)1.76 (3)2.555 (4)164 (4)
O7—H73O⋯O51.09 (4)1.35 (4)2.441 (3)175 (3)
O8—H82O⋯O20.82 (3)2.12 (3)2.871 (3)153 (4)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  An investigation of bone resorption and Dictyostelium discoideum growth inhibition by bisphosphonate drugs.

Authors:  Christina M Szabo; Michael B Martin; Eric Oldfield
Journal:  J Med Chem       Date:  2002-07-04       Impact factor: 7.446

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.