Literature DB >> 21581313

N'-[(Z)-4-Methyl-benzyl-idene]-4-nitro-benzohydrazide monohydrate.

Hoong-Kun Fun, Samuel Robinson Jebas, K V Sujith, B Kalluraya.   

Abstract

In the title compound, C(15)H(13)N(3)O(3)·H(2)O, the two benzene rings form a dihedral angle of 2.03 (2)°. In the crystal structure, adjacent hydrazide mol-ecules are linked into dimers by water mol-ecules; these dimers are then stacked along the b axis. Inter-molecular O-H⋯O, O-H⋯N and C-H⋯O hydrogen bonds and a π-π stacking inter-action between the nitro-benzene and tolyl rings with a centroid-centroid distance of 3.8208 (3) Å are observed. There is also a short O⋯N contact [2.6824 (7) Å].

Entities:  

Year:  2008        PMID: 21581313      PMCID: PMC2960119          DOI: 10.1107/S1600536808037008

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature on hydrazones, see: Sridhar & Perumal (2003 ▶). For the biological applications of hydrazides/hydrazones, see: Bedia et al. (2006 ▶). For a related structure, see: Fun et al. (2008 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C15H13N3O3·H2O M = 301.30 Triclinic, a = 6.5387 (1) Å b = 6.9730 (1) Å c = 15.9064 (3) Å α = 80.524 (1)° β = 82.628 (1)° γ = 85.036 (1)° V = 707.85 (2) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 100.0 (1) K 0.68 × 0.44 × 0.23 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.932, T max = 0.976 31311 measured reflections 7380 independent reflections 6571 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.118 S = 1.05 7380 reflections 211 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.48 e Å−3 Δρmin = −0.59 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808037008/is2358sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808037008/is2358Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H13N3O3·H2OZ = 2
Mr = 301.30F000 = 316
Triclinic, P1Dx = 1.414 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 6.5387 (1) ÅCell parameters from 9969 reflections
b = 6.9730 (1) Åθ = 2.6–26.3º
c = 15.9064 (3) ŵ = 0.11 mm1
α = 80.524 (1)ºT = 100.0 (1) K
β = 82.628 (1)ºBlock, colourless
γ = 85.036 (1)º0.68 × 0.44 × 0.23 mm
V = 707.85 (2) Å3
Bruker SMART APEXII CCD area-detector diffractometer7380 independent reflections
Radiation source: fine-focus sealed tube6571 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.020
T = 100.0(1) Kθmax = 37.5º
φ and ω scansθmin = 2.6º
Absorption correction: multi-scan(SADABS; Bruker, 2005)h = −11→11
Tmin = 0.932, Tmax = 0.976k = −11→10
31311 measured reflectionsl = −27→27
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.037H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.119  w = 1/[σ2(Fo2) + (0.0681P)2 + 0.1283P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.001
7380 reflectionsΔρmax = 0.48 e Å3
211 parametersΔρmin = −0.59 e Å3
4 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Experimental. The data was collected with the Oxford Cyrosystem Cobra low-temperature attachment.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.27580 (6)0.77076 (7)−0.04714 (3)0.01642 (8)
O20.75581 (8)1.18850 (8)−0.38841 (3)0.02159 (10)
O30.46360 (8)1.16591 (9)−0.30724 (3)0.02477 (11)
N11.08155 (7)0.62939 (7)0.10666 (3)0.01228 (8)
N20.97488 (7)0.71707 (7)0.03900 (3)0.01180 (8)
N30.65301 (8)1.14188 (7)−0.31919 (3)0.01517 (9)
C11.25937 (9)0.43357 (8)0.25978 (3)0.01394 (9)
H1A1.35280.45560.21050.017*
C21.32689 (9)0.33958 (9)0.33630 (4)0.01558 (9)
H2A1.46600.29920.33750.019*
C31.19044 (10)0.30421 (9)0.41173 (4)0.01618 (10)
C40.98236 (10)0.36711 (9)0.40850 (4)0.01732 (10)
H4A0.88910.34550.45790.021*
C50.91322 (9)0.46166 (9)0.33225 (4)0.01511 (9)
H5A0.77440.50320.33130.018*
C61.05015 (8)0.49509 (8)0.25695 (3)0.01205 (8)
C70.96681 (8)0.59124 (8)0.17866 (3)0.01265 (9)
H7A0.82590.62610.18090.015*
C81.08418 (8)0.78209 (7)−0.03665 (3)0.01124 (8)
C90.96283 (8)0.87393 (7)−0.10826 (3)0.01078 (8)
C100.74981 (8)0.92155 (8)−0.09685 (3)0.01259 (9)
H10A0.67600.8932−0.04280.015*
C110.64812 (8)1.01101 (8)−0.16601 (3)0.01320 (9)
H11A0.50671.0435−0.15890.016*
C120.76204 (8)1.05088 (8)−0.24589 (3)0.01220 (8)
C130.97361 (9)1.00639 (8)−0.25947 (3)0.01340 (9)
H13A1.04651.0355−0.31370.016*
C141.07314 (8)0.91711 (8)−0.18969 (3)0.01269 (9)
H14A1.21480.8857−0.19720.015*
C151.26554 (12)0.20102 (11)0.49388 (4)0.02473 (13)
H15A1.15170.18990.53860.037*
H15B1.36870.27400.50960.037*
H15C1.32420.07330.48590.037*
O1W0.56488 (7)0.60570 (7)0.07749 (3)0.01669 (8)
H1N20.8430 (12)0.7058 (17)0.0471 (8)0.027 (3)*
H2W10.5907 (17)0.4907 (12)0.0684 (8)0.031 (3)*
H1W10.4410 (13)0.6364 (17)0.0668 (8)0.035 (3)*
U11U22U33U12U13U23
O10.00972 (15)0.0221 (2)0.01583 (17)0.00035 (13)−0.00227 (13)0.00155 (14)
O20.0250 (2)0.0269 (2)0.01076 (17)−0.00148 (17)−0.00275 (15)0.00358 (15)
O30.01615 (19)0.0361 (3)0.0199 (2)0.00133 (18)−0.00737 (16)0.00461 (19)
N10.01330 (18)0.01250 (17)0.01075 (17)−0.00018 (13)−0.00421 (13)0.00081 (13)
N20.01085 (17)0.01426 (18)0.00977 (16)−0.00046 (13)−0.00339 (13)0.00113 (13)
N30.0174 (2)0.01585 (19)0.01215 (18)−0.00094 (15)−0.00535 (15)0.00083 (14)
C10.0137 (2)0.0152 (2)0.01227 (19)−0.00081 (16)−0.00285 (15)0.00066 (15)
C20.0155 (2)0.0166 (2)0.0143 (2)0.00085 (17)−0.00481 (16)−0.00018 (16)
C30.0208 (2)0.0158 (2)0.01158 (19)0.00194 (17)−0.00496 (17)−0.00040 (16)
C40.0199 (2)0.0196 (2)0.01066 (19)0.00142 (18)−0.00093 (17)0.00081 (16)
C50.0148 (2)0.0174 (2)0.01210 (19)0.00041 (16)−0.00163 (16)−0.00002 (16)
C60.01369 (19)0.01192 (19)0.01037 (18)−0.00115 (15)−0.00323 (14)0.00030 (14)
C70.01325 (19)0.0133 (2)0.01122 (18)−0.00088 (15)−0.00333 (15)0.00004 (15)
C80.01101 (18)0.01159 (18)0.01084 (18)0.00006 (14)−0.00243 (14)−0.00044 (14)
C90.01090 (18)0.01125 (18)0.00998 (17)−0.00020 (14)−0.00238 (14)−0.00045 (14)
C100.01106 (18)0.0154 (2)0.01048 (18)0.00026 (15)−0.00182 (14)0.00036 (15)
C110.01170 (19)0.0154 (2)0.01187 (19)0.00029 (15)−0.00297 (15)0.00029 (15)
C120.01382 (19)0.01256 (19)0.01019 (18)−0.00090 (15)−0.00400 (15)0.00040 (14)
C130.0141 (2)0.0151 (2)0.01041 (18)−0.00143 (16)−0.00148 (15)−0.00005 (15)
C140.01159 (19)0.0146 (2)0.01130 (18)−0.00053 (15)−0.00128 (14)−0.00060 (15)
C150.0321 (3)0.0271 (3)0.0134 (2)0.0068 (2)−0.0081 (2)0.0011 (2)
O1W0.01130 (16)0.0212 (2)0.01725 (18)−0.00029 (13)−0.00349 (13)−0.00109 (14)
O1—C81.2400 (6)C6—C71.4605 (7)
O2—N31.2246 (7)C7—H7A0.9300
O3—N31.2298 (7)C8—C91.4970 (7)
N1—C71.2881 (7)C9—C141.3994 (7)
N1—N21.3859 (6)C9—C101.3994 (7)
N2—C81.3491 (7)C10—C111.3898 (7)
N2—H1N20.864 (8)C10—H10A0.9300
N3—C121.4703 (7)C11—C121.3867 (7)
C1—C21.3896 (8)C11—H11A0.9300
C1—C61.4019 (8)C12—C131.3884 (8)
C1—H1A0.9300C13—C141.3895 (7)
C2—C31.4008 (8)C13—H13A0.9300
C2—H2A0.9300C14—H14A0.9300
C3—C41.3977 (9)C15—H15A0.9600
C3—C151.5035 (8)C15—H15B0.9600
C4—C51.3913 (8)C15—H15C0.9600
C4—H4A0.9300O1W—H2W10.837 (8)
C5—C61.3999 (8)O1W—H1W10.851 (8)
C5—H5A0.9300
C7—N1—N2114.21 (4)O1—C8—N2122.52 (5)
C8—N2—N1118.48 (4)O1—C8—C9120.74 (5)
C8—N2—H1N2125.4 (8)N2—C8—C9116.74 (4)
N1—N2—H1N2115.2 (8)C14—C9—C10119.65 (5)
O2—N3—O3123.96 (5)C14—C9—C8116.93 (4)
O2—N3—C12118.18 (5)C10—C9—C8123.40 (5)
O3—N3—C12117.85 (5)C11—C10—C9120.23 (5)
C2—C1—C6119.91 (5)C11—C10—H10A119.9
C2—C1—H1A120.0C9—C10—H10A119.9
C6—C1—H1A120.0C12—C11—C10118.60 (5)
C1—C2—C3121.56 (5)C12—C11—H11A120.7
C1—C2—H2A119.2C10—C11—H11A120.7
C3—C2—H2A119.2C11—C12—C13122.73 (5)
C4—C3—C2118.18 (5)C11—C12—N3118.38 (5)
C4—C3—C15120.88 (6)C13—C12—N3118.89 (5)
C2—C3—C15120.95 (6)C12—C13—C14118.01 (5)
C5—C4—C3120.72 (5)C12—C13—H13A121.0
C5—C4—H4A119.6C14—C13—H13A121.0
C3—C4—H4A119.6C13—C14—C9120.79 (5)
C4—C5—C6120.80 (5)C13—C14—H14A119.6
C4—C5—H5A119.6C9—C14—H14A119.6
C6—C5—H5A119.6C3—C15—H15A109.5
C5—C6—C1118.83 (5)C3—C15—H15B109.5
C5—C6—C7118.05 (5)H15A—C15—H15B109.5
C1—C6—C7123.11 (5)C3—C15—H15C109.5
N1—C7—C6122.33 (5)H15A—C15—H15C109.5
N1—C7—H7A118.8H15B—C15—H15C109.5
C6—C7—H7A118.8H2W1—O1W—H1W1106.0 (10)
C7—N1—N2—C8172.77 (5)N2—C8—C9—C14−171.45 (5)
C6—C1—C2—C3−0.09 (9)O1—C8—C9—C10−168.59 (5)
C1—C2—C3—C4−0.32 (9)N2—C8—C9—C1010.18 (8)
C1—C2—C3—C15179.55 (6)C14—C9—C10—C110.09 (8)
C2—C3—C4—C50.20 (9)C8—C9—C10—C11178.42 (5)
C15—C3—C4—C5−179.67 (6)C9—C10—C11—C120.20 (8)
C3—C4—C5—C60.33 (9)C10—C11—C12—C13−0.47 (8)
C4—C5—C6—C1−0.73 (9)C10—C11—C12—N3178.76 (5)
C4—C5—C6—C7178.66 (5)O2—N3—C12—C11175.31 (5)
C2—C1—C6—C50.61 (8)O3—N3—C12—C11−4.94 (8)
C2—C1—C6—C7−178.75 (5)O2—N3—C12—C13−5.43 (8)
N2—N1—C7—C6178.63 (5)O3—N3—C12—C13174.32 (6)
C5—C6—C7—N1179.37 (5)C11—C12—C13—C140.42 (8)
C1—C6—C7—N1−1.26 (9)N3—C12—C13—C14−178.81 (5)
N1—N2—C8—O1−1.88 (8)C12—C13—C14—C9−0.10 (8)
N1—N2—C8—C9179.38 (4)C10—C9—C14—C13−0.14 (8)
O1—C8—C9—C149.78 (8)C8—C9—C14—C13−178.58 (5)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···O1W0.864 (8)1.978 (9)2.8191 (7)164.4 (11)
O1W—H2W1···O1i0.837 (9)2.013 (9)2.8327 (7)166.1 (11)
O1W—H1W1···O1ii0.851 (9)2.258 (11)2.9430 (6)137.7 (10)
O1W—H1W1···N1ii0.851 (9)2.357 (9)3.1287 (7)151.0 (11)
C1—H1A···O1Wiii0.932.503.4090 (7)165
C4—H4A···O2iv0.932.583.4565 (8)157
C7—H7A···O1W0.932.553.2393 (7)132
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N2⋯O1W0.864 (8)1.978 (9)2.8191 (7)164.4 (11)
O1W—H2W1⋯O1i0.837 (9)2.013 (9)2.8327 (7)166.1 (11)
O1W—H1W1⋯O1ii0.851 (9)2.258 (11)2.9430 (6)137.7 (10)
O1W—H1W1⋯N1ii0.851 (9)2.357 (9)3.1287 (7)151.0 (11)
C1—H1A⋯O1Wiii0.932.503.4090 (7)165
C4—H4A⋯O2iv0.932.583.4565 (8)157
C7—H7A⋯O1W0.932.553.2393 (7)132

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and characterization of novel hydrazide-hydrazones and the study of their structure-antituberculosis activity.

Authors:  Koçyiğit-Kaymakçioğlu Bedia; Oruç Elçin; Unsalan Seda; Kandemirli Fatma; Shvets Nathaly; Rollas Sevim; Anatholy Dimoglo
Journal:  Eur J Med Chem       Date:  2006-08-17       Impact factor: 6.514

3.  4-Chloro-N'-[(Z)-4-(dimethyl-amino)benzyl-idene]benzohydrazide mono-hydrate.

Authors:  Hoong-Kun Fun; P S Patil; Samuel Robinson Jebas; K V Sujith; B Kalluraya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-26
  3 in total

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