Literature DB >> 21581276

2-(4-Chloro-phen-yl)-5-{3,4-dibut-oxy-5-[5-(4-chloro-phen-yl)-1,3,4-oxadiazol-2-yl]thio-phen-2-yl}-1,3,4-oxadiazole.

Hai-Lin Li, Hong-Wei Wang, Ran-Zhe Lu, Hai-Bo Wang.   

Abstract

In the title compound, C(28)H(26)Cl(2)N(4)O(4)S, the dihedral angles between the two chloro-phenyl rings and the two oxadiazol rings are 10.51 (4)° and 13.55 (3)°, respectively. The thio-phene ring is oriented at dihedral angles of 5.59 (4)°, 8.33 (4)° and 4.41 (4)°, 11.05 (3)°, respectively, with respect to the two oxadiazol and the two chloro-phenyl rings. The intra-molecular C-H⋯O hydrogen bond results in the formation of a five-membered ring. In the crystal structure, π-π contacts between the oxadiazol rings, the chloro-phenyl rings and the chloro-phenyl and oxadiazol rings [centroid-centroid distances = 3.428 (3) Å, 3.750 (3) Å and 3.768 (3) Å, respectively] are present.

Entities:  

Year:  2008        PMID: 21581276      PMCID: PMC2959962          DOI: 10.1107/S1600536808035848

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Blumstengel et al. (1999 ▶); Bugatti et al. (2006 ▶); Laurent et al. (2005 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C28H26Cl2N4O4S M = 585.49 Monoclinic, a = 19.215 (4) Å b = 22.847 (5) Å c = 14.933 (3) Å β = 121.25 (3)° V = 5605 (3) Å3 Z = 8 Mo Kα radiation μ = 0.35 mm−1 T = 294 (2) K 0.30 × 0.10 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.903, T max = 0.966 10353 measured reflections 5053 independent reflections 2050 reflections with I > 2σ(I) R int = 0.066 3 standard reflections frequency: 120 min intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.080 wR(F 2) = 0.198 S = 1.01 5053 reflections 298 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.46 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I. DOI: 10.1107/S1600536808035848/hk2553sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808035848/hk2553Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C28H26Cl2N4O4SF000 = 2432
Mr = 585.49Dx = 1.388 Mg m3
Monoclinic, C2/cMelting point: 451K K
Hall symbol: -C 2ycMo Kα radiation λ = 0.71073 Å
a = 19.215 (4) ÅCell parameters from 25 reflections
b = 22.847 (5) Åθ = 9–12º
c = 14.933 (3) ŵ = 0.35 mm1
β = 121.25 (3)ºT = 294 (2) K
V = 5605 (3) Å3Block, yellow
Z = 80.30 × 0.10 × 0.10 mm
Enraf–Nonius CAD-4 diffractometerRint = 0.066
Radiation source: fine-focus sealed tubeθmax = 25.2º
Monochromator: graphiteθmin = 1.5º
T = 294(2) Kh = −22→19
ω/2θ scansk = 0→27
Absorption correction: ψ scan(North et al., 1968)l = 0→17
Tmin = 0.903, Tmax = 0.9663 standard reflections
10353 measured reflections every 120 min
5053 independent reflections intensity decay: none
2050 reflections with I > 2σ(I)
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.080H-atom parameters constrained
wR(F2) = 0.198  w = 1/[σ2(Fo2) + (0.060P)2 + 7.P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
5053 reflectionsΔρmax = 0.24 e Å3
298 parametersΔρmin = −0.46 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S0.42931 (8)0.23942 (6)0.30296 (10)0.0831 (4)
Cl10.55998 (13)−0.21791 (7)0.42942 (15)0.1331 (6)
Cl20.69885 (12)0.65697 (7)0.60696 (15)0.1313 (6)
O10.6213 (2)0.15456 (15)0.5028 (3)0.089
O20.6482 (2)0.28280 (14)0.5192 (3)0.0878 (10)
O30.49888 (19)0.07239 (14)0.3740 (2)0.077
O40.5531 (2)0.38674 (15)0.4339 (3)0.0912 (10)
N10.3730 (3)0.0474 (2)0.2575 (3)0.089
N20.3786 (3)0.1093 (2)0.2660 (3)0.0923 (12)
N30.4340 (3)0.3757 (2)0.2900 (4)0.0953 (13)
N40.4475 (3)0.4330 (2)0.3069 (4)0.0969 (13)
C10.6637 (4)0.3351 (3)0.8279 (5)0.108
H1B0.69390.33190.90280.161*
H1C0.61020.31910.80060.161*
H1D0.65920.37560.80830.161*
C20.7039 (4)0.3043 (3)0.7869 (4)0.108
H2B0.70860.26300.80440.129*
H2C0.75770.32020.81150.129*
C30.6462 (4)0.3145 (3)0.6681 (4)0.109
H3B0.59070.30340.64510.131*
H3C0.64730.35490.64900.131*
C40.6818 (3)0.2761 (3)0.6269 (4)0.100
H4A0.73980.28360.66250.120*
H4B0.67430.23600.64130.120*
C50.7651 (3)−0.0001 (3)0.6258 (4)0.1016 (17)
H5A0.7620−0.02060.67980.152*
H5B0.82070.00120.64320.152*
H5C0.7327−0.02020.56030.152*
C60.7339 (4)0.0605 (2)0.6166 (5)0.1031 (18)
H6A0.67830.05850.60110.124*
H6B0.76610.07980.68380.124*
C70.7355 (4)0.0965 (3)0.5357 (4)0.0981 (16)
H7A0.70520.07570.46970.118*
H7B0.79160.09870.55300.118*
C80.7034 (3)0.1572 (3)0.5182 (5)0.1018 (18)
H8A0.73860.18150.57830.122*
H8B0.70090.17380.45690.122*
C90.5230 (4)−0.1491 (2)0.3946 (5)0.0945 (16)
C100.4501 (4)−0.1366 (3)0.3208 (5)0.1019 (18)
H10A0.4140−0.16690.28410.122*
C110.4230 (4)−0.0771 (3)0.2937 (5)0.0971 (16)
H11A0.3714−0.06940.23670.117*
C120.4728 (3)−0.0316 (2)0.3514 (3)0.0728 (12)
C130.5496 (3)−0.0449 (2)0.4331 (4)0.089
H13A0.5834−0.01440.47340.106*
C140.5787 (4)−0.1012 (2)0.4579 (4)0.0952 (16)
H14A0.6314−0.10880.51250.114*
C150.4457 (3)0.0271 (2)0.3244 (4)0.0823 (14)
C160.4529 (3)0.1223 (2)0.3318 (4)0.0801 (13)
C170.4872 (3)0.1802 (2)0.3644 (3)0.0730 (12)
C180.5670 (3)0.1949 (2)0.4454 (3)0.0656 (11)
C190.5800 (3)0.2557 (2)0.4558 (4)0.077
C200.5068 (3)0.2866 (2)0.3816 (4)0.0741 (13)
C210.4949 (3)0.3481 (2)0.3638 (4)0.0786 (13)
C220.5193 (3)0.4405 (2)0.3924 (4)0.0817 (14)
C230.5637 (3)0.4922 (2)0.4449 (4)0.0796 (14)
C240.5285 (4)0.5466 (3)0.4006 (5)0.1096 (19)
H24A0.47710.54990.34070.132*
C250.5782 (4)0.5975 (3)0.4552 (5)0.1068 (19)
H25A0.56010.63440.42620.128*
C260.6473 (4)0.5927 (3)0.5436 (5)0.0986 (16)
C270.6769 (4)0.5396 (3)0.5885 (4)0.0925 (16)
H27A0.72510.53700.65320.111*
C280.6361 (3)0.4912 (2)0.5388 (4)0.0824 (14)
H28A0.65780.45510.56940.099*
U11U22U33U12U13U23
S0.0709 (8)0.0945 (9)0.0751 (8)0.0016 (7)0.0317 (7)0.0012 (7)
Cl10.1665 (17)0.0968 (11)0.1486 (15)0.0058 (11)0.0905 (14)0.0078 (10)
Cl20.1615 (17)0.1022 (12)0.1372 (14)−0.0175 (11)0.0825 (13)−0.0107 (10)
O10.082 (3)0.088 (3)0.099 (2)0.0027 (14)0.0451 (11)0.0125 (12)
O20.082 (2)0.086 (2)0.087 (2)−0.0029 (19)0.0378 (19)−0.0123 (18)
N10.082 (3)0.088 (3)0.092 (2)0.011 (2)0.036 (3)0.013 (2)
N20.070 (3)0.106 (3)0.095 (3)−0.014 (2)0.037 (3)−0.004 (2)
N30.069 (3)0.091 (3)0.106 (4)0.008 (2)0.032 (3)0.015 (3)
N40.079 (3)0.105 (4)0.096 (3)0.014 (3)0.037 (3)0.017 (3)
C10.108 (3)0.112 (3)0.101 (4)0.010 (3)0.051 (4)0.010 (4)
C20.108 (3)0.103 (3)0.096 (3)0.011 (4)0.046 (4)0.008 (3)
C30.109 (4)0.102 (3)0.099 (5)0.012 (5)0.047 (5)0.006 (4)
C40.100 (3)0.088 (4)0.110 (4)0.008 (4)0.052 (4)0.005 (3)
C50.087 (4)0.104 (4)0.099 (4)0.013 (3)0.039 (3)0.005 (3)
C60.089 (4)0.097 (4)0.105 (4)0.009 (3)0.038 (3)−0.005 (3)
C70.104 (4)0.111 (5)0.080 (4)0.008 (4)0.049 (3)0.003 (3)
C80.059 (3)0.126 (5)0.120 (4)0.016 (3)0.046 (3)0.021 (4)
C90.122 (5)0.092 (4)0.083 (4)−0.006 (4)0.063 (4)−0.009 (3)
C100.103 (5)0.099 (5)0.106 (5)−0.032 (4)0.056 (4)−0.019 (4)
C110.097 (4)0.102 (4)0.110 (4)−0.018 (4)0.066 (4)−0.012 (4)
C120.071 (3)0.092 (4)0.059 (3)−0.007 (3)0.036 (3)−0.006 (2)
C130.089 (4)0.091 (4)0.079 (2)−0.016 (4)0.036 (4)−0.004 (3)
C140.100 (4)0.090 (4)0.082 (4)−0.012 (3)0.038 (3)0.002 (3)
C150.081 (4)0.089 (4)0.087 (3)−0.024 (3)0.050 (3)−0.012 (3)
O30.077 (3)0.082 (3)0.080 (3)−0.012 (4)0.040 (3)−0.012 (3)
C160.071 (3)0.089 (4)0.079 (3)−0.004 (3)0.039 (3)−0.010 (3)
C170.066 (3)0.096 (3)0.066 (3)0.002 (3)0.040 (3)0.002 (2)
C180.058 (3)0.080 (3)0.050 (2)0.008 (2)0.021 (2)−0.011 (2)
C190.077 (3)0.097 (3)0.074 (2)−0.016 (2)0.050 (3)−0.012 (2)
C200.088 (3)0.073 (3)0.078 (3)−0.013 (3)0.056 (3)−0.010 (2)
C210.087 (4)0.090 (4)0.067 (3)−0.011 (3)0.045 (3)−0.013 (3)
O40.099 (3)0.083 (2)0.090 (2)0.010 (2)0.048 (2)0.0039 (19)
C220.089 (4)0.080 (3)0.080 (3)0.026 (3)0.047 (3)0.020 (3)
C230.082 (4)0.089 (4)0.079 (4)0.020 (3)0.050 (3)0.008 (3)
C240.111 (5)0.093 (4)0.130 (5)0.018 (4)0.067 (4)0.022 (4)
C250.132 (6)0.092 (4)0.106 (5)0.034 (4)0.068 (5)0.022 (4)
C260.088 (4)0.106 (5)0.108 (5)−0.003 (4)0.055 (4)0.002 (4)
C270.101 (4)0.096 (4)0.093 (4)0.017 (4)0.059 (3)−0.002 (3)
C280.091 (4)0.079 (3)0.084 (4)0.020 (3)0.051 (3)0.001 (3)
S—C171.689 (5)C7—H7B0.9700
S—C201.716 (5)C8—H8A0.9700
Cl1—C91.693 (6)C8—H8B0.9700
Cl2—C261.748 (6)C9—C101.287 (8)
O1—C181.321 (5)C9—C141.478 (7)
O1—C81.472 (5)C10—C111.437 (8)
O2—C191.307 (5)C10—H10A0.9300
O2—C41.397 (6)C11—C121.373 (7)
N1—C151.310 (6)C11—H11A0.9300
N1—N21.419 (6)C12—C131.375 (7)
N2—C161.279 (6)C12—C151.419 (7)
N3—C211.282 (6)C13—C141.375 (7)
N3—N41.333 (6)C13—H13A0.9300
N4—C221.318 (6)C14—H14A0.9300
C1—C21.400 (7)C15—O31.369 (5)
C1—H1B0.9600O3—C161.378 (6)
C1—H1C0.9600C16—C171.445 (7)
C1—H1D0.9600C17—C181.415 (6)
C2—C31.546 (8)C18—C191.408 (6)
C2—H2B0.9700C19—C201.445 (7)
C2—H2C0.9700C20—C211.426 (7)
C3—C41.432 (7)C21—O41.381 (6)
C3—H3B0.9700O4—C221.377 (5)
C3—H3C0.9700C22—C231.429 (7)
C4—H4A0.9700C23—C281.370 (7)
C4—H4B0.9700C23—C241.407 (7)
C5—C61.486 (7)C24—C251.456 (9)
C5—H5A0.9600C24—H24A0.9300
C5—H5B0.9600C25—C261.304 (8)
C5—H5C0.9600C25—H25A0.9300
C6—C71.475 (7)C26—C271.360 (8)
C6—H6A0.9700C27—C281.337 (7)
C6—H6B0.9700C27—H27A0.9300
C7—C81.484 (7)C28—H28A0.9300
C7—H7A0.9700
C17—S—C2092.2 (2)C9—C10—H10A119.2
C18—O1—C8119.7 (4)C11—C10—H10A119.2
C19—O2—C4118.2 (4)C12—C11—C10120.6 (6)
C15—N1—N2106.5 (4)C12—C11—H11A119.7
C16—N2—N1107.6 (4)C10—C11—H11A119.7
C21—N3—N4108.6 (5)C11—C12—C13117.8 (5)
C22—N4—N3108.2 (4)C11—C12—C15120.3 (5)
C2—C1—H1B109.5C13—C12—C15121.8 (5)
C2—C1—H1C109.5C12—C13—C14123.1 (5)
H1B—C1—H1C109.5C12—C13—H13A118.5
C2—C1—H1D109.5C14—C13—H13A118.5
H1B—C1—H1D109.5C13—C14—C9117.5 (5)
H1C—C1—H1D109.5C13—C14—H14A121.3
C1—C2—C3101.3 (5)C9—C14—H14A121.3
C1—C2—H2B111.5N1—C15—O3110.2 (5)
C3—C2—H2B111.5N1—C15—C12129.8 (5)
C1—C2—H2C111.5O3—C15—C12120.0 (5)
C3—C2—H2C111.5C15—O3—C16104.8 (4)
H2B—C2—H2C109.3N2—C16—O3110.8 (5)
C4—C3—C2100.5 (5)N2—C16—C17127.1 (5)
C4—C3—H3B111.7O3—C16—C17122.1 (4)
C2—C3—H3B111.7C18—C17—C16127.4 (4)
C4—C3—H3C111.7C18—C17—S113.0 (4)
C2—C3—H3C111.7C16—C17—S119.6 (4)
H3B—C3—H3C109.4O1—C18—C19125.6 (4)
O2—C4—C3113.0 (5)O1—C18—C17122.1 (4)
O2—C4—H4A109.0C19—C18—C17112.4 (4)
C3—C4—H4A109.0O2—C19—C18127.0 (4)
O2—C4—H4B109.0O2—C19—C20122.4 (4)
C3—C4—H4B109.0C18—C19—C20110.5 (4)
H4A—C4—H4B107.8C21—C20—C19128.4 (5)
C6—C5—H5A109.5C21—C20—S119.6 (4)
C6—C5—H5B109.5C19—C20—S111.8 (4)
H5A—C5—H5B109.5N3—C21—O4110.8 (5)
C6—C5—H5C109.5N3—C21—C20129.1 (5)
H5A—C5—H5C109.5O4—C21—C20120.0 (5)
H5B—C5—H5C109.5C22—O4—C21102.8 (4)
C7—C6—C5114.6 (5)N4—C22—O4109.4 (5)
C7—C6—H6A108.6N4—C22—C23131.7 (5)
C5—C6—H6A108.6O4—C22—C23118.8 (5)
C7—C6—H6B108.6C28—C23—C24118.7 (5)
C5—C6—H6B108.6C28—C23—C22123.2 (5)
H6A—C6—H6B107.6C24—C23—C22117.9 (5)
C6—C7—C8118.8 (5)C23—C24—C25115.2 (6)
C6—C7—H7A107.6C23—C24—H24A122.4
C8—C7—H7A107.6C25—C24—H24A122.4
C6—C7—H7B107.6C26—C25—C24121.9 (6)
C8—C7—H7B107.6C26—C25—H25A119.0
H7A—C7—H7B107.0C24—C25—H25A119.0
O1—C8—C7107.7 (5)C25—C26—C27121.3 (6)
O1—C8—H8A110.2C25—C26—Cl2118.1 (5)
C7—C8—H8A110.2C27—C26—Cl2120.5 (5)
O1—C8—H8B110.2C28—C27—C26119.3 (6)
C7—C8—H8B110.2C28—C27—H27A120.4
H8A—C8—H8B108.5C26—C27—H27A120.4
C10—C9—C14119.3 (6)C27—C28—C23123.2 (5)
C10—C9—Cl1124.4 (5)C27—C28—H28A118.4
C14—C9—Cl1116.3 (5)C23—C28—H28A118.4
C9—C10—C11121.6 (6)
C15—N1—N2—C163.0 (5)C16—C17—C18—C19179.8 (4)
C21—N3—N4—C221.1 (6)S—C17—C18—C19−0.4 (5)
C1—C2—C3—C4−172.2 (5)C4—O2—C19—C18−63.3 (6)
C19—O2—C4—C3−82.5 (6)C4—O2—C19—C20119.5 (5)
C2—C3—C4—O2−171.2 (5)O1—C18—C19—O23.8 (8)
C5—C6—C7—C8178.2 (5)C17—C18—C19—O2−176.0 (4)
C18—O1—C8—C7−152.1 (4)O1—C18—C19—C20−178.7 (4)
C6—C7—C8—O1−51.8 (7)C17—C18—C19—C201.5 (5)
C14—C9—C10—C114.3 (8)O2—C19—C20—C210.1 (8)
Cl1—C9—C10—C11−178.7 (4)C18—C19—C20—C21−177.5 (4)
C9—C10—C11—C12−4.8 (9)O2—C19—C20—S175.7 (3)
C10—C11—C12—C131.9 (7)C18—C19—C20—S−1.9 (5)
C10—C11—C12—C15−179.9 (5)C17—S—C20—C21177.5 (4)
C11—C12—C13—C141.2 (7)C17—S—C20—C191.4 (3)
C15—C12—C13—C14−176.9 (5)N4—N3—C21—O4−0.6 (6)
C12—C13—C14—C9−1.7 (8)N4—N3—C21—C20177.3 (5)
C10—C9—C14—C13−1.1 (8)C19—C20—C21—N3170.1 (5)
Cl1—C9—C14—C13−178.4 (4)S—C20—C21—N3−5.2 (7)
N2—N1—C15—O3−1.7 (5)C19—C20—C21—O4−12.3 (7)
N2—N1—C15—C12176.4 (5)S—C20—C21—O4172.4 (3)
C11—C12—C15—N110.1 (8)N3—C21—O4—C22−0.2 (5)
C13—C12—C15—N1−171.9 (5)C20—C21—O4—C22−178.2 (4)
C11—C12—C15—O3−172.0 (4)N3—N4—C22—O4−1.2 (6)
C13—C12—C15—O36.0 (7)N3—N4—C22—C23179.2 (5)
N1—C15—O3—C16−0.1 (5)C21—O4—C22—N40.9 (5)
C12—C15—O3—C16−178.4 (4)C21—O4—C22—C23−179.5 (4)
N1—N2—C16—O3−3.2 (5)N4—C22—C23—C28174.8 (5)
N1—N2—C16—C17179.4 (4)O4—C22—C23—C28−4.7 (7)
C15—O3—C16—N22.2 (5)N4—C22—C23—C24−1.1 (8)
C15—O3—C16—C17179.7 (4)O4—C22—C23—C24179.4 (4)
N2—C16—C17—C18172.2 (5)C28—C23—C24—C256.4 (7)
O3—C16—C17—C18−5.0 (7)C22—C23—C24—C25−177.5 (5)
N2—C16—C17—S−7.5 (7)C23—C24—C25—C26−5.5 (9)
O3—C16—C17—S175.3 (3)C24—C25—C26—C270.9 (9)
C20—S—C17—C18−0.6 (3)C24—C25—C26—Cl2−175.8 (5)
C20—S—C17—C16179.2 (4)C25—C26—C27—C283.0 (9)
C8—O1—C18—C19−49.3 (6)Cl2—C26—C27—C28179.6 (4)
C8—O1—C18—C17130.5 (5)C26—C27—C28—C23−1.9 (8)
C16—C17—C18—O10.0 (7)C24—C23—C28—C27−3.1 (8)
S—C17—C18—O1179.7 (3)C22—C23—C28—C27−179.0 (5)
D—H···AD—HH···AD···AD—H···A
C4—H4B···O10.972.573.203 (7)123
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4B⋯O10.972.573.203 (7)123
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  New thiophene analogues of kenpaullone: synthesis and biological evaluation in breast cancer cells.

Authors:  Laurent Brault; Evelyne Migianu; Adrien Néguesque; Eric Battaglia; Denyse Bagrel; Gilbert Kirsch
Journal:  Eur J Med Chem       Date:  2005-04-12       Impact factor: 6.514

  2 in total

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