Literature DB >> 21581267

2,2',4,4',6,6'-Hexamethyl-N-(3-phthalimidoprop-yl)-N,N'-(propane-1,3-di-yl)dibenzene-sulfonamide.

Yu-Xia Wang1, Peng-Fei Cheng, Chao-Jie Wang.   

Abstract

In the title compound, C(32)H(38)N(3)O(6)S(2), an inter-mediate in the synthesis of polyamine drugs, the dihedral angle between the phenyl rings of the two 2,4,6-trimethyl-benzene-sulfonyl groups is 27.1 (3)°. In the crystal structure, mol-ecules are linked by inter-molecular N-H⋯O hydrogen bonds, thereby forming an infinite one-dimensional chain propagating along [010].

Entities:  

Year:  2008        PMID: 21581267      PMCID: PMC2960108          DOI: 10.1107/S1600536808036003

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Polyamines are essential growth factors for cells, existing mainly as polycations at physiological pH, see: Cullis et al. (1999 ▶); Seiler et al. (1996 ▶); Tsen et al. (2008 ▶).

Experimental

Crystal data

C32H39N3O6S2 M = 625.78 Monoclinic, a = 32.042 (3) Å b = 9.9782 (8) Å c = 25.105 (2) Å β = 127.917 (1)° V = 6332.1 (9) Å3 Z = 8 Mo Kα radiation μ = 0.22 mm−1 T = 296 (2) K 0.18 × 0.15 × 0.13 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2001 ▶) T min = 0.962, T max = 0.973 17128 measured reflections 6212 independent reflections 4574 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.069 wR(F 2) = 0.219 S = 1.09 6212 reflections 388 parameters 44 restraints H-atom parameters constrained Δρmax = 0.80 e Å−3 Δρmin = −0.57 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2003 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808036003/hb2835sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808036003/hb2835Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C32H39N3O6S2F000 = 2656
Mr = 625.78Dx = 1.313 Mg m3
Monoclinic, C2/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 6528 reflections
a = 32.042 (3) Åθ = 2.4–28.1º
b = 9.9782 (8) ŵ = 0.22 mm1
c = 25.105 (2) ÅT = 296 (2) K
β = 127.917 (1)ºBlock, colourless
V = 6332.1 (9) Å30.18 × 0.15 × 0.13 mm
Z = 8
Bruker SMART CCD diffractometer6212 independent reflections
Radiation source: fine-focus sealed tube4574 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.022
T = 296(2) Kθmax = 26.0º
ω scansθmin = 2.1º
Absorption correction: Multi-scan(SADABS; Sheldrick, 2001)h = −25→39
Tmin = 0.962, Tmax = 0.973k = −12→11
17128 measured reflectionsl = −30→21
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.069H-atom parameters constrained
wR(F2) = 0.219  w = 1/[σ2(Fo2) + (0.1169P)2 + 7.2057P] where P = (Fo2 + 2Fc2)/3
S = 1.10(Δ/σ)max < 0.001
6212 reflectionsΔρmax = 0.80 e Å3
388 parametersΔρmin = −0.57 e Å3
44 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.15326 (3)0.47012 (8)0.46771 (4)0.0531 (3)
S20.06920 (4)0.72487 (9)0.64731 (6)0.0655 (3)
C10.14805 (12)0.2922 (3)0.45787 (15)0.0464 (7)
C20.10216 (14)0.2310 (3)0.40203 (16)0.0539 (8)
C30.10074 (16)0.0918 (4)0.39911 (18)0.0635 (9)
H3A0.07030.05020.36260.076*
C40.1424 (2)0.0131 (4)0.4479 (2)0.0757 (9)
C50.18654 (16)0.0764 (4)0.50242 (19)0.0637 (9)
H5A0.21480.02420.53610.076*
C60.19082 (13)0.2140 (3)0.50937 (17)0.0546 (8)
C70.24128 (15)0.2685 (4)0.57208 (19)0.0734 (10)
H7A0.26440.19560.59920.110*
H7B0.23340.31940.59740.110*
H7C0.25830.32530.55970.110*
C80.1398 (2)−0.1383 (4)0.4422 (2)0.0849 (10)
H8A0.1062−0.16450.40140.127*
H8B0.1439−0.17630.48030.127*
H8C0.1676−0.17000.44130.127*
C90.05315 (15)0.3038 (5)0.34304 (18)0.0761 (11)
H9A0.02730.23930.31140.114*
H9B0.06270.35980.32100.114*
H9C0.03850.35800.35950.114*
C100.10008 (13)0.4624 (3)0.51695 (17)0.0581 (8)
H10A0.09980.36560.52030.070*
H10B0.06910.48880.47240.070*
C110.09849 (17)0.5273 (4)0.5705 (2)0.0732 (10)
H11A0.07400.47920.57400.088*
H11B0.13330.52360.61400.088*
C120.08133 (16)0.6696 (4)0.55154 (18)0.0698 (10)
H12A0.04320.67190.51710.084*
H12B0.09720.70700.53210.084*
C130.05511 (12)0.8878 (3)0.66060 (17)0.0512 (7)
C140.08566 (13)0.9494 (4)0.72467 (17)0.0554 (8)
C150.07141 (15)1.0790 (4)0.7284 (2)0.0718 (10)
H15A0.09101.12110.77020.086*
C160.03042 (19)1.1470 (5)0.6740 (3)0.1001 (12)
C170.00179 (16)1.0841 (4)0.6122 (2)0.0822 (12)
H17A−0.02591.13060.57450.099*
C180.01232 (15)0.9547 (5)0.6035 (2)0.0743 (9)
C19−0.02361 (16)0.8980 (5)0.5329 (2)0.0848 (10)
H19A−0.04940.96410.50280.127*
H19B−0.04130.82010.53260.127*
H19C−0.00300.87370.51850.127*
C200.0171 (2)1.2887 (5)0.6807 (3)0.1087 (13)
H20A0.04041.31530.72730.163*
H20B−0.01881.29220.66460.163*
H20C0.02151.34840.65450.163*
C210.13243 (15)0.8889 (5)0.78906 (18)0.0743 (11)
H21A0.14620.95170.82530.111*
H21B0.15930.86790.78440.111*
H21C0.12170.80850.79870.111*
C220.14972 (14)0.8142 (4)0.65501 (19)0.0644 (9)
H22A0.17540.74240.67170.077*
H22B0.15470.85520.69360.077*
C230.16017 (16)0.9152 (4)0.62171 (19)0.0692 (10)
H23A0.12950.97320.59460.083*
H23B0.16470.86990.59140.083*
C240.20845 (15)1.0008 (4)0.67022 (18)0.0644 (9)
H24A0.23890.94300.69910.077*
H24B0.21521.05700.64470.077*
C250.16924 (18)1.1983 (4)0.68724 (19)0.0795 (9)
C260.17520 (14)1.2568 (3)0.74571 (17)0.0596 (8)
C270.15189 (16)1.3666 (4)0.7500 (2)0.0748 (11)
H27A0.12801.41900.71230.090*
C280.16498 (18)1.3968 (4)0.8121 (2)0.0789 (11)
H28A0.14971.47120.81620.095*
C290.20005 (17)1.3201 (4)0.8680 (2)0.0719 (10)
H29A0.20801.34290.90930.086*
C300.22369 (14)1.2090 (4)0.86355 (18)0.0636 (9)
H30A0.24741.15650.90130.076*
C310.21105 (12)1.1789 (3)0.80191 (16)0.0528 (7)
C320.22889 (12)1.0682 (3)0.78088 (16)0.0522 (7)
O10.20542 (11)0.5116 (3)0.49361 (14)0.0727 (7)
O20.11048 (11)0.5309 (3)0.40790 (13)0.0741 (7)
O30.10576 (13)0.6647 (3)0.71039 (18)0.0900 (9)
O40.14220 (13)1.2330 (3)0.62932 (13)0.0890 (8)
O50.26026 (10)0.9802 (3)0.81456 (12)0.0691 (7)
O60.02164 (12)0.6529 (3)0.59969 (18)0.0939 (10)
N10.20210 (11)1.0851 (3)0.71198 (13)0.0566 (7)
N20.09614 (12)0.7566 (3)0.61035 (16)0.0662 (8)
N30.14813 (10)0.5046 (3)0.52664 (13)0.0523 (6)
H3B0.17290.54660.56260.063*
U11U22U33U12U13U23
S10.0687 (5)0.0447 (4)0.0570 (5)0.0021 (4)0.0443 (4)0.0024 (3)
S20.0762 (6)0.0477 (5)0.0974 (7)−0.0042 (4)0.0659 (6)−0.0118 (5)
C10.0573 (17)0.0451 (15)0.0488 (16)0.0052 (13)0.0387 (15)0.0006 (13)
C20.0663 (19)0.0585 (19)0.0489 (16)0.0028 (15)0.0414 (16)−0.0046 (14)
C30.082 (2)0.061 (2)0.0574 (19)−0.0106 (18)0.0483 (19)−0.0156 (16)
C40.127 (3)0.0491 (15)0.094 (2)0.0034 (17)0.089 (2)−0.0075 (15)
C50.085 (2)0.0552 (19)0.068 (2)0.0204 (18)0.056 (2)0.0112 (17)
C60.0643 (19)0.0556 (18)0.0589 (18)0.0071 (15)0.0454 (17)0.0024 (15)
C70.060 (2)0.078 (3)0.062 (2)0.0080 (19)0.0281 (18)0.0070 (19)
C80.131 (3)0.0509 (15)0.098 (2)0.0032 (17)0.083 (2)−0.0078 (15)
C90.064 (2)0.090 (3)0.054 (2)0.005 (2)0.0263 (18)−0.0025 (19)
C100.0620 (19)0.0545 (18)0.0641 (19)−0.0097 (15)0.0420 (17)−0.0172 (15)
C110.079 (2)0.067 (2)0.087 (3)−0.0039 (19)0.058 (2)−0.010 (2)
C120.069 (2)0.076 (2)0.065 (2)0.0016 (19)0.0412 (19)−0.0101 (16)
C130.0510 (16)0.0481 (16)0.0657 (19)0.0003 (13)0.0415 (16)−0.0056 (14)
C140.0531 (17)0.062 (2)0.0628 (19)0.0002 (15)0.0417 (16)−0.0057 (16)
C150.067 (2)0.069 (2)0.089 (3)−0.0076 (18)0.053 (2)−0.029 (2)
C160.083 (2)0.068 (2)0.151 (3)0.0135 (17)0.073 (2)−0.015 (2)
C170.061 (2)0.074 (2)0.098 (3)0.0204 (19)0.042 (2)0.009 (2)
C180.0549 (15)0.093 (2)0.0681 (17)0.0012 (15)0.0343 (14)−0.0060 (16)
C190.0613 (16)0.097 (2)0.0718 (17)0.0007 (15)0.0288 (14)−0.0062 (16)
C200.088 (2)0.070 (2)0.155 (3)0.0145 (17)0.069 (2)−0.015 (2)
C210.070 (2)0.099 (3)0.059 (2)0.007 (2)0.0428 (19)0.004 (2)
C220.065 (2)0.062 (2)0.077 (2)0.0052 (17)0.0488 (19)−0.0013 (18)
C230.079 (2)0.071 (2)0.069 (2)−0.0127 (19)0.051 (2)−0.0134 (18)
C240.068 (2)0.071 (2)0.067 (2)−0.0084 (18)0.0480 (19)−0.0093 (18)
C250.1013 (19)0.0670 (16)0.0558 (13)0.0131 (14)0.0410 (14)0.0110 (12)
C260.0613 (19)0.0478 (17)0.0597 (19)−0.0017 (15)0.0321 (17)0.0019 (14)
C270.077 (2)0.054 (2)0.082 (3)0.0068 (18)0.043 (2)0.0018 (18)
C280.094 (3)0.051 (2)0.108 (3)0.002 (2)0.070 (3)−0.009 (2)
C290.087 (3)0.063 (2)0.081 (3)−0.018 (2)0.059 (2)−0.020 (2)
C300.064 (2)0.065 (2)0.0557 (19)−0.0042 (17)0.0340 (17)−0.0022 (16)
C310.0471 (16)0.0491 (17)0.0546 (17)−0.0055 (13)0.0274 (14)−0.0026 (14)
C320.0422 (15)0.0573 (18)0.0510 (16)−0.0027 (14)0.0255 (14)0.0013 (14)
O10.0816 (17)0.0666 (16)0.0918 (18)−0.0112 (13)0.0644 (15)−0.0050 (14)
O20.0906 (18)0.0586 (15)0.0659 (15)0.0090 (13)0.0444 (14)0.0070 (12)
O30.115 (2)0.0606 (16)0.125 (3)0.0143 (16)0.090 (2)0.0101 (17)
O40.1081 (18)0.0715 (15)0.0585 (12)0.0151 (13)0.0364 (13)0.0111 (11)
O50.0614 (14)0.0711 (16)0.0638 (14)0.0187 (12)0.0329 (12)0.0094 (12)
O60.096 (2)0.0750 (18)0.146 (3)−0.0360 (16)0.092 (2)−0.0488 (19)
N10.0579 (15)0.0545 (15)0.0524 (15)−0.0013 (12)0.0314 (13)−0.0031 (12)
N20.0697 (18)0.0615 (17)0.088 (2)−0.0128 (14)0.0592 (17)−0.0233 (14)
N30.0554 (15)0.0481 (14)0.0540 (14)−0.0052 (11)0.0339 (13)−0.0116 (11)
S1—O21.404 (3)C15—H15A0.9300
S1—O11.432 (3)C16—C171.375 (7)
S1—N31.623 (3)C16—C201.516 (6)
S1—C11.786 (3)C17—C181.385 (6)
S2—O31.400 (3)C17—H17A0.9300
S2—O61.424 (3)C18—C191.510 (5)
S2—N21.640 (3)C19—H19A0.9600
S2—C131.773 (3)C19—H19B0.9600
C1—C21.403 (5)C19—H19C0.9600
C1—C61.408 (4)C20—H20A0.9600
C2—C31.390 (5)C20—H20B0.9600
C2—C91.526 (5)C20—H20C0.9600
C3—C41.374 (6)C21—H21A0.9600
C3—H3A0.9300C21—H21B0.9600
C4—C51.377 (6)C21—H21C0.9600
C4—C81.515 (5)C22—N21.473 (5)
C5—C61.379 (5)C22—C231.474 (5)
C5—H5A0.9300C22—H22A0.9700
C6—C71.503 (5)C22—H22B0.9700
C7—H7A0.9600C23—C241.513 (5)
C7—H7B0.9600C23—H23A0.9700
C7—H7C0.9600C23—H23B0.9700
C8—H8A0.9600C24—N11.453 (4)
C8—H8B0.9600C24—H24A0.9700
C8—H8C0.9600C24—H24B0.9700
C9—H9A0.9600C25—O41.199 (4)
C9—H9B0.9600C25—N11.402 (5)
C9—H9C0.9600C25—C261.479 (6)
C10—N31.465 (4)C26—C271.367 (5)
C10—C111.520 (5)C26—C311.386 (5)
C10—H10A0.9700C27—C281.375 (6)
C10—H10B0.9700C27—H27A0.9300
C11—C121.491 (6)C28—C291.371 (6)
C11—H11A0.9700C28—H28A0.9300
C11—H11B0.9700C29—C301.385 (5)
C12—N21.516 (4)C29—H29A0.9300
C12—H12A0.9700C30—C311.371 (5)
C12—H12B0.9700C30—H30A0.9300
C13—C181.402 (5)C31—C321.482 (5)
C13—C141.410 (5)C32—O51.205 (4)
C14—C151.393 (5)C32—N11.390 (4)
C14—C211.498 (5)N3—H3B0.8600
C15—C161.359 (7)
O2—S1—O1117.42 (17)C17—C16—C20120.9 (5)
O2—S1—N3107.70 (16)C16—C17—C18123.0 (4)
O1—S1—N3105.58 (15)C16—C17—H17A118.5
O2—S1—C1109.56 (15)C18—C17—H17A118.5
O1—S1—C1109.49 (15)C17—C18—C13117.6 (4)
N3—S1—C1106.49 (14)C17—C18—C19116.8 (4)
O3—S2—O6116.9 (2)C13—C18—C19125.6 (4)
O3—S2—N2110.94 (18)C18—C19—H19A109.5
O6—S2—N2106.63 (18)C18—C19—H19B109.5
O3—S2—C13108.23 (17)H19A—C19—H19B109.5
O6—S2—C13110.82 (17)C18—C19—H19C109.5
N2—S2—C13102.29 (16)H19A—C19—H19C109.5
C2—C1—C6120.5 (3)H19B—C19—H19C109.5
C2—C1—S1121.5 (2)C16—C20—H20A109.5
C6—C1—S1118.0 (2)C16—C20—H20B109.5
C3—C2—C1117.9 (3)H20A—C20—H20B109.5
C3—C2—C9116.3 (3)C16—C20—H20C109.5
C1—C2—C9125.8 (3)H20A—C20—H20C109.5
C4—C3—C2122.8 (4)H20B—C20—H20C109.5
C4—C3—H3A118.6C14—C21—H21A109.5
C2—C3—H3A118.6C14—C21—H21B109.5
C3—C4—C5117.7 (3)H21A—C21—H21B109.5
C3—C4—C8121.3 (4)C14—C21—H21C109.5
C5—C4—C8121.0 (4)H21A—C21—H21C109.5
C4—C5—C6123.0 (3)H21B—C21—H21C109.5
C4—C5—H5A118.5N2—C22—C23113.6 (3)
C6—C5—H5A118.5N2—C22—H22A108.9
C5—C6—C1118.1 (3)C23—C22—H22A108.9
C5—C6—C7116.9 (3)N2—C22—H22B108.9
C1—C6—C7125.1 (3)C23—C22—H22B108.9
C6—C7—H7A109.5H22A—C22—H22B107.7
C6—C7—H7B109.5C22—C23—C24113.9 (3)
H7A—C7—H7B109.5C22—C23—H23A108.8
C6—C7—H7C109.5C24—C23—H23A108.8
H7A—C7—H7C109.5C22—C23—H23B108.8
H7B—C7—H7C109.5C24—C23—H23B108.8
C4—C8—H8A109.5H23A—C23—H23B107.7
C4—C8—H8B109.5N1—C24—C23112.4 (3)
H8A—C8—H8B109.5N1—C24—H24A109.1
C4—C8—H8C109.5C23—C24—H24A109.1
H8A—C8—H8C109.5N1—C24—H24B109.1
H8B—C8—H8C109.5C23—C24—H24B109.1
C2—C9—H9A109.5H24A—C24—H24B107.9
C2—C9—H9B109.5O4—C25—N1123.8 (4)
H9A—C9—H9B109.5O4—C25—C26130.2 (4)
C2—C9—H9C109.5N1—C25—C26105.9 (3)
H9A—C9—H9C109.5C27—C26—C31121.3 (4)
H9B—C9—H9C109.5C27—C26—C25130.6 (3)
N3—C10—C11109.5 (3)C31—C26—C25108.0 (3)
N3—C10—H10A109.8C26—C27—C28117.7 (4)
C11—C10—H10A109.8C26—C27—H27A121.2
N3—C10—H10B109.8C28—C27—H27A121.2
C11—C10—H10B109.8C29—C28—C27121.6 (4)
H10A—C10—H10B108.2C29—C28—H28A119.2
C12—C11—C10109.3 (3)C27—C28—H28A119.2
C12—C11—H11A109.8C28—C29—C30120.6 (4)
C10—C11—H11A109.8C28—C29—H29A119.7
C12—C11—H11B109.8C30—C29—H29A119.7
C10—C11—H11B109.8C31—C30—C29118.0 (3)
H11A—C11—H11B108.3C31—C30—H30A121.0
C11—C12—N2113.7 (3)C29—C30—H30A121.0
C11—C12—H12A108.8C30—C31—C26120.8 (3)
N2—C12—H12A108.8C30—C31—C32130.9 (3)
C11—C12—H12B108.8C26—C31—C32108.4 (3)
N2—C12—H12B108.8O5—C32—N1124.9 (3)
H12A—C12—H12B107.7O5—C32—C31129.1 (3)
C18—C13—C14121.0 (3)N1—C32—C31105.9 (3)
C18—C13—S2116.5 (3)C32—N1—C25111.7 (3)
C14—C13—S2122.4 (3)C32—N1—C24125.1 (3)
C15—C14—C13117.0 (3)C25—N1—C24123.2 (3)
C15—C14—C21116.9 (3)C22—N2—C12119.1 (3)
C13—C14—C21126.0 (3)C22—N2—S2114.7 (2)
C16—C15—C14123.4 (4)C12—N2—S2118.8 (2)
C16—C15—H15A118.3C10—N3—S1118.2 (2)
C14—C15—H15A118.3C10—N3—H3B120.9
C15—C16—C17117.9 (4)S1—N3—H3B120.9
C15—C16—C20121.2 (5)
D—H···AD—HH···AD···AD—H···A
N3—H3B···O5i0.862.533.192 (4)134
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3B⋯O5i0.862.533.192 (4)134

Symmetry code: (i) .

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