Literature DB >> 21581259

Di-4-pyridyl sulfide-isophthalic acid (1/1).

Jian-Hua Qin1, Xiao-Dong Li, Jian-Ge Wang.   

Abstract

In the heteromolecular title structure, C(10)H(8)N(2)S·C(8)H(6)O(4), the two components are linked by O-H⋯N hydrogen bonds to form a one-dimensional chain. These chains are further inter-connected by weak inter-molecular C-H⋯O hydrogen bonds and weak C-H⋯π inter-actions to generate a three-dimensional supra-molecular structure.

Entities:  

Year:  2008        PMID: 21581259      PMCID: PMC2960055          DOI: 10.1107/S1600536808035496

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For C—H⋯O hydrogen bonds, see: Bhogala et al. (2005 ▶); Wang et al. (2008 ▶). For C—H⋯π inter­actions, see: Fun & Kia (2008 ▶).

Experimental

Crystal data

C10H8N2S·C8H6O4 M = 354.37 Triclinic, a = 6.618 (6) Å b = 8.200 (7) Å c = 16.013 (13) Å α = 88.808 (11)° β = 79.340 (11)° γ = 79.275 (11)° V = 839.0 (12) Å3 Z = 2 Mo Kα radiation μ = 0.22 mm−1 T = 291 (2) K 0.47 × 0.30 × 0.11 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1997 ▶) T min = 0.905, T max = 0.977 6280 measured reflections 3084 independent reflections 1885 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.080 wR(F 2) = 0.269 S = 1.08 3084 reflections 228 parameters H-atom parameters constrained Δρmax = 1.05 e Å−3 Δρmin = −0.28 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808035496/si2125sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808035496/si2125Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H8N2S·C8H6O4Z = 2
Mr = 354.37F000 = 368
Triclinic, P1Dx = 1.403 Mg m3
a = 6.618 (6) ÅMo Kα radiation λ = 0.71073 Å
b = 8.200 (7) ÅCell parameters from 1298 reflections
c = 16.013 (13) Åθ = 2.9–21.2º
α = 88.808 (11)ºµ = 0.22 mm1
β = 79.340 (11)ºT = 291 (2) K
γ = 79.275 (11)ºBlock, colorless
V = 839.0 (12) Å30.47 × 0.30 × 0.11 mm
Bruker SMART CCD area-detector diffractometer3084 independent reflections
Radiation source: fine-focus sealed tube1885 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.020
T = 291(2) Kθmax = 25.5º
φ and ω scansθmin = 2.5º
Absorption correction: multi-scan(SADABS; Bruker, 1997)h = −8→7
Tmin = 0.905, Tmax = 0.977k = −9→9
6280 measured reflectionsl = −19→19
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.080H-atom parameters constrained
wR(F2) = 0.269  w = 1/[σ2(Fo2) + (0.1354P)2 + 0.4871P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
3084 reflectionsΔρmax = 1.05 e Å3
228 parametersΔρmin = −0.28 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
xyzUiso*/Ueq
S10.2928 (2)0.9132 (2)0.77591 (8)0.1000 (6)
O10.9948 (5)0.7101 (5)0.0723 (2)0.0868 (10)
H1D0.92030.73960.03710.130*
O20.7255 (6)0.5957 (5)0.1306 (2)0.0993 (12)
O30.7222 (6)0.3409 (5)0.4098 (2)0.0958 (12)
H3D0.67030.30730.45600.144*
O41.0069 (6)0.2941 (6)0.4653 (2)0.1133 (14)
N10.5677 (7)1.1790 (5)0.5430 (2)0.0733 (10)
N20.7476 (6)0.8077 (5)0.9602 (2)0.0777 (11)
C10.8967 (7)0.6270 (6)0.1321 (3)0.0716 (12)
C21.0110 (6)0.5765 (5)0.2024 (3)0.0636 (10)
C31.2038 (7)0.6166 (6)0.2056 (3)0.0724 (12)
H31.26940.67270.16050.087*
C41.2987 (7)0.5754 (6)0.2735 (3)0.0833 (14)
H41.42640.60580.27510.100*
C51.2062 (7)0.4887 (6)0.3400 (3)0.0772 (12)
H51.27210.45970.38610.093*
C61.0141 (6)0.4447 (5)0.3378 (3)0.0639 (10)
C70.9189 (6)0.4878 (5)0.2695 (2)0.0637 (10)
H70.79120.45740.26770.076*
C80.9164 (7)0.3505 (6)0.4099 (3)0.0734 (12)
C90.6939 (8)1.0749 (6)0.5857 (3)0.0761 (13)
H90.83761.05830.56610.091*
C100.6199 (8)0.9931 (6)0.6562 (3)0.0750 (12)
H100.71200.92080.68340.090*
C110.4099 (7)1.0177 (6)0.6868 (3)0.0691 (11)
C120.2817 (8)1.1212 (6)0.6439 (3)0.0782 (13)
H120.13771.13990.66310.094*
C130.3637 (8)1.1986 (6)0.5722 (3)0.0795 (13)
H130.27281.26730.54290.095*
C140.6067 (8)0.9811 (6)0.8561 (3)0.0833 (14)
H140.60561.07870.82540.100*
C150.7391 (8)0.9425 (6)0.9127 (3)0.0842 (15)
H150.82861.01500.91820.101*
C160.6162 (10)0.7091 (7)0.9505 (3)0.0917 (16)
H160.61690.61430.98340.110*
C170.4795 (8)0.7377 (6)0.8952 (3)0.0855 (15)
H170.38960.66440.89160.103*
C180.4760 (7)0.8763 (6)0.8449 (3)0.0716 (12)
U11U22U33U12U13U23
S10.0992 (10)0.1442 (14)0.0722 (9)−0.0626 (10)−0.0181 (7)0.0271 (8)
O10.091 (2)0.117 (3)0.0667 (19)−0.058 (2)−0.0187 (16)0.0361 (18)
O20.097 (2)0.150 (3)0.076 (2)−0.074 (2)−0.0345 (18)0.054 (2)
O30.093 (2)0.138 (3)0.074 (2)−0.057 (2)−0.0301 (18)0.053 (2)
O40.085 (2)0.152 (4)0.103 (3)−0.016 (2)−0.032 (2)0.068 (3)
N10.095 (3)0.077 (2)0.0527 (19)−0.028 (2)−0.0184 (19)0.0174 (17)
N20.099 (3)0.088 (3)0.056 (2)−0.045 (2)−0.0143 (19)0.0178 (19)
C10.074 (3)0.094 (3)0.056 (2)−0.043 (2)−0.010 (2)0.018 (2)
C20.062 (2)0.071 (3)0.059 (2)−0.021 (2)−0.0061 (19)0.0076 (19)
C30.069 (3)0.084 (3)0.070 (3)−0.035 (2)−0.007 (2)0.011 (2)
C40.063 (3)0.100 (4)0.092 (3)−0.031 (3)−0.013 (2)0.011 (3)
C50.069 (3)0.089 (3)0.074 (3)−0.010 (2)−0.020 (2)0.010 (2)
C60.061 (2)0.067 (3)0.063 (2)−0.0106 (19)−0.0114 (19)0.010 (2)
C70.061 (2)0.073 (3)0.060 (2)−0.023 (2)−0.0099 (19)0.012 (2)
C80.072 (3)0.082 (3)0.063 (3)−0.008 (2)−0.012 (2)0.017 (2)
C90.076 (3)0.091 (3)0.058 (2)−0.016 (2)−0.005 (2)0.016 (2)
C100.082 (3)0.080 (3)0.057 (2)−0.007 (2)−0.008 (2)0.019 (2)
C110.079 (3)0.076 (3)0.058 (2)−0.025 (2)−0.014 (2)0.003 (2)
C120.071 (3)0.092 (3)0.072 (3)−0.019 (2)−0.010 (2)−0.001 (2)
C130.084 (3)0.084 (3)0.077 (3)−0.017 (3)−0.033 (3)0.012 (3)
C140.107 (4)0.085 (3)0.072 (3)−0.043 (3)−0.027 (3)0.024 (2)
C150.108 (4)0.096 (3)0.063 (3)−0.056 (3)−0.017 (3)0.021 (2)
C160.136 (5)0.087 (3)0.068 (3)−0.058 (3)−0.024 (3)0.022 (2)
C170.111 (4)0.093 (3)0.068 (3)−0.059 (3)−0.019 (3)0.008 (3)
C180.083 (3)0.086 (3)0.049 (2)−0.033 (2)−0.002 (2)0.005 (2)
S1—C181.767 (5)C5—H50.9300
S1—C111.776 (5)C6—C71.369 (6)
O1—C11.308 (5)C6—C81.490 (6)
O1—H1D0.8200C7—H70.9300
O2—C11.212 (5)C9—C101.361 (6)
O3—C81.302 (6)C9—H90.9300
O3—H3D0.8200C10—C111.364 (6)
O4—C81.198 (5)C10—H100.9300
N1—C131.325 (6)C11—C121.356 (6)
N1—C91.347 (6)C12—C131.373 (7)
N2—C161.323 (6)C12—H120.9300
N2—C151.327 (6)C13—H130.9300
C1—C21.480 (6)C14—C181.364 (6)
C2—C31.385 (6)C14—C151.367 (7)
C2—C71.394 (5)C14—H140.9300
C3—C41.360 (6)C15—H150.9300
C3—H30.9300C16—C171.366 (7)
C4—C51.380 (6)C16—H160.9300
C4—H40.9300C17—C181.379 (6)
C5—C61.391 (6)C17—H170.9300
C18—S1—C11106.3 (2)N1—C9—H9118.6
C1—O1—H1D109.5C10—C9—H9118.6
C8—O3—H3D109.5C9—C10—C11119.6 (4)
C13—N1—C9117.0 (4)C9—C10—H10120.2
C16—N2—C15115.8 (4)C11—C10—H10120.2
O2—C1—O1122.8 (4)C12—C11—C10118.0 (4)
O2—C1—C2122.8 (4)C12—C11—S1117.9 (4)
O1—C1—C2114.3 (4)C10—C11—S1124.0 (4)
C3—C2—C7118.4 (4)C11—C12—C13120.2 (4)
C3—C2—C1122.9 (4)C11—C12—H12119.9
C7—C2—C1118.7 (4)C13—C12—H12119.9
C4—C3—C2121.1 (4)N1—C13—C12122.4 (4)
C4—C3—H3119.5N1—C13—H13118.8
C2—C3—H3119.5C12—C13—H13118.8
C3—C4—C5120.3 (4)C18—C14—C15119.8 (4)
C3—C4—H4119.9C18—C14—H14120.1
C5—C4—H4119.9C15—C14—H14120.1
C4—C5—C6119.8 (4)N2—C15—C14123.9 (4)
C4—C5—H5120.1N2—C15—H15118.1
C6—C5—H5120.1C14—C15—H15118.1
C7—C6—C5119.6 (4)N2—C16—C17124.2 (4)
C7—C6—C8121.2 (4)N2—C16—H16117.9
C5—C6—C8119.2 (4)C17—C16—H16117.9
C6—C7—C2120.9 (4)C16—C17—C18119.3 (4)
C6—C7—H7119.6C16—C17—H17120.3
C2—C7—H7119.6C18—C17—H17120.3
O4—C8—O3122.8 (4)C14—C18—C17116.9 (4)
O4—C8—C6122.5 (4)C14—C18—S1124.6 (4)
O3—C8—C6114.7 (4)C17—C18—S1118.4 (4)
N1—C9—C10122.8 (4)
O2—C1—C2—C3−178.0 (5)N1—C9—C10—C11−1.0 (8)
O1—C1—C2—C31.2 (7)C9—C10—C11—C121.5 (7)
O2—C1—C2—C70.6 (7)C9—C10—C11—S1177.7 (4)
O1—C1—C2—C7179.8 (4)C18—S1—C11—C12−152.0 (4)
C7—C2—C3—C4−2.1 (7)C18—S1—C11—C1031.8 (5)
C1—C2—C3—C4176.5 (4)C10—C11—C12—C13−0.4 (7)
C2—C3—C4—C51.6 (8)S1—C11—C12—C13−176.8 (4)
C3—C4—C5—C6−0.6 (8)C9—N1—C13—C121.9 (7)
C4—C5—C6—C70.1 (7)C11—C12—C13—N1−1.4 (8)
C4—C5—C6—C8179.8 (4)C16—N2—C15—C14−0.5 (8)
C5—C6—C7—C2−0.6 (7)C18—C14—C15—N2−1.3 (8)
C8—C6—C7—C2179.7 (4)C15—N2—C16—C170.9 (8)
C3—C2—C7—C61.6 (6)N2—C16—C17—C180.7 (9)
C1—C2—C7—C6−177.0 (4)C15—C14—C18—C172.7 (8)
C7—C6—C8—O4170.8 (5)C15—C14—C18—S1178.4 (4)
C5—C6—C8—O4−8.8 (7)C16—C17—C18—C14−2.4 (8)
C7—C6—C8—O3−12.1 (6)C16—C17—C18—S1−178.4 (4)
C5—C6—C8—O3168.3 (4)C11—S1—C18—C1434.9 (5)
C13—N1—C9—C10−0.7 (7)C11—S1—C18—C17−149.5 (4)
D—H···AD—HH···AD···AD—H···A
C17—H17···O2i0.932.453.334 (6)159
C16—H16···O2ii0.932.583.180 (6)123
C13—H13···O4iii0.932.313.141 (6)148
C12—H12···Cg1iv0.932.983.570 (6)123
O3—H3D···N1v0.821.832.634 (5)164
O1—H1D···N2vi0.821.842.662 (5)179
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C17—H17⋯O2i0.932.453.334 (6)159
C16—H16⋯O2ii0.932.583.180 (6)123
C13—H13⋯O4iii0.932.313.141 (6)148
C12—H12⋯Cg1iv0.932.983.570 (6)123
O3—H3D⋯N1v0.821.832.634 (5)164
O1—H1D⋯N2vi0.821.842.662 (5)179

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) . Cg1 is the centroid of the C2–C7 isophthalic acid ring.

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