Literature DB >> 21581253

5-Phenyl-7,8-dihydro-1,3-dioxano[4,5-g]isoquinoline.

Jiu-Ming Li, Dong Liang.   

Abstract

In the title compound, C(16)H(13)NO(2), the two benzene rings make a dihedral angle of 55.5 (2)°. The crystal packing is stabilized by inter-molecular C-H⋯O hydrogen bonds and weak π-π stacking inter-actions [centroid-centroid distance = 3.595 (3)Å], linking the mol-ecules into ladders of inversion dimers.

Entities:  

Year:  2008        PMID: 21581253      PMCID: PMC2959899          DOI: 10.1107/S1600536808035009

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of the biological activities of isoquinolinone compounds, see: Bentley (2000 ▶); Jayaraman et al. (2002 ▶). For the Bischler–Napieralski reaction, see: Bischler & Napieralski (1893 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C16H13NO2 M = 251.27 Triclinic, a = 8.5005 (17) Å b = 8.5297 (17) Å c = 10.143 (2) Å α = 109.07 (3)° β = 109.44 (2)° γ = 99.70 (3)° V = 622.9 (2) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 293 (2) K 0.28 × 0.10 × 0.08 mm

Data collection

Rigaku R-AXIS RAPID IP area-detector diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.976, T max = 0.993 4801 measured reflections 2145 independent reflections 1275 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.143 S = 1.13 2145 reflections 173 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.20 e Å−3 Data collection: RAPID-AUTO (Rigaku, 2004 ▶); cell refinement: RAPID-AUTO; data reduction: RAPID-AUTO; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808035009/hg2432sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808035009/hg2432Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H13NO2Z = 2
Mr = 251.27F000 = 264
Triclinic, P1Dx = 1.340 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 8.5005 (17) ÅCell parameters from 1451 reflections
b = 8.5297 (17) Åθ = 2.5–23.4º
c = 10.143 (2) ŵ = 0.09 mm1
α = 109.07 (3)ºT = 293 (2) K
β = 109.44 (2)ºBlock, colorless
γ = 99.70 (3)º0.28 × 0.10 × 0.08 mm
V = 622.9 (2) Å3
Rigaku R-AXIS RAPID IP area-detector diffractometer2145 independent reflections
Radiation source: Rotating Anode1275 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.037
T = 293(2) Kθmax = 25.0º
ω oscillation scansθmin = 3.1º
Absorption correction: multi-scan(ABSCOR; Higashi, 1995)h = −10→10
Tmin = 0.976, Tmax = 0.993k = −10→10
4801 measured reflectionsl = −11→12
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.041  w = 1/[σ2(Fo2) + (0.0514P)2 + 0.1397P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.144(Δ/σ)max < 0.001
S = 1.13Δρmax = 0.20 e Å3
2145 reflectionsΔρmin = −0.20 e Å3
173 parametersExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.048 (8)
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.9151 (2)0.7157 (2)1.18121 (17)0.0688 (6)
O20.6920 (2)0.4574 (2)1.01260 (17)0.0656 (6)
N10.8054 (3)0.6182 (3)0.5069 (2)0.0638 (6)
C10.5553 (3)0.2889 (4)0.3031 (3)0.0614 (7)
H1B0.52960.38080.27950.074*
C20.4741 (4)0.1204 (4)0.1932 (3)0.0734 (8)
H2A0.39380.09960.09610.088*
C30.5097 (4)−0.0172 (4)0.2247 (3)0.0772 (9)
H3A0.4550−0.13080.14960.093*
C40.6281 (4)0.0149 (4)0.3695 (3)0.0692 (8)
H4A0.6521−0.07790.39240.083*
C50.7107 (3)0.1825 (3)0.4798 (3)0.0579 (7)
H5A0.79140.20220.57650.069*
C60.6756 (3)0.3230 (3)0.4491 (2)0.0511 (6)
C70.7705 (3)0.5073 (3)0.5614 (2)0.0521 (6)
C80.9013 (4)0.7997 (3)0.6168 (3)0.0679 (8)
H8A0.81870.85700.64060.081*
H8B0.95730.86000.57020.081*
C91.0385 (4)0.8139 (3)0.7632 (3)0.0604 (7)
H9A1.12790.76640.74240.072*
H9B1.09430.93540.83510.072*
C100.9508 (3)0.7137 (3)0.8300 (2)0.0497 (6)
C110.8169 (3)0.5585 (3)0.7272 (2)0.0468 (6)
C120.7220 (3)0.4618 (3)0.7802 (2)0.0490 (6)
H12A0.63260.35750.71300.059*
C130.7659 (3)0.5266 (3)0.9336 (2)0.0492 (6)
C140.8994 (3)0.6795 (3)1.0347 (2)0.0510 (6)
C150.9955 (3)0.7752 (3)0.9871 (2)0.0525 (6)
H15A1.08710.87711.05660.063*
C160.7728 (4)0.5854 (4)1.1664 (3)0.0713 (8)
H16A0.81590.53181.23630.086*
H16B0.68820.63791.19180.086*
U11U22U33U12U13U23
O10.0833 (14)0.0751 (12)0.0399 (9)0.0155 (10)0.0240 (9)0.0202 (8)
O20.0861 (14)0.0677 (11)0.0470 (10)0.0158 (10)0.0377 (9)0.0221 (9)
N10.0805 (16)0.0671 (14)0.0497 (12)0.0199 (12)0.0329 (11)0.0267 (11)
C10.0513 (15)0.0779 (18)0.0514 (15)0.0196 (13)0.0185 (12)0.0255 (14)
C20.0562 (17)0.091 (2)0.0482 (15)0.0073 (15)0.0087 (12)0.0213 (15)
C30.080 (2)0.0689 (18)0.0552 (16)0.0037 (16)0.0187 (14)0.0116 (14)
C40.079 (2)0.0613 (16)0.0564 (16)0.0162 (14)0.0246 (14)0.0179 (13)
C50.0633 (16)0.0625 (15)0.0404 (13)0.0169 (13)0.0184 (11)0.0168 (12)
C60.0522 (15)0.0630 (15)0.0383 (12)0.0164 (12)0.0232 (10)0.0173 (11)
C70.0588 (16)0.0615 (15)0.0433 (12)0.0229 (12)0.0272 (11)0.0221 (12)
C80.087 (2)0.0622 (16)0.0626 (16)0.0183 (14)0.0396 (15)0.0296 (14)
C90.0646 (17)0.0594 (15)0.0592 (15)0.0142 (12)0.0327 (13)0.0223 (12)
C100.0498 (14)0.0533 (13)0.0471 (13)0.0170 (11)0.0226 (11)0.0190 (11)
C110.0517 (14)0.0525 (13)0.0393 (12)0.0180 (11)0.0220 (10)0.0186 (10)
C120.0533 (15)0.0522 (13)0.0427 (12)0.0180 (11)0.0221 (10)0.0178 (11)
C130.0587 (15)0.0553 (14)0.0405 (12)0.0199 (11)0.0273 (11)0.0202 (11)
C140.0596 (16)0.0587 (14)0.0359 (12)0.0255 (12)0.0197 (11)0.0178 (11)
C150.0507 (14)0.0560 (14)0.0458 (13)0.0150 (11)0.0187 (11)0.0171 (11)
C160.087 (2)0.0816 (19)0.0449 (14)0.0216 (16)0.0341 (14)0.0215 (14)
O1—C141.370 (3)C7—C111.481 (3)
O1—C161.427 (3)C8—C91.504 (4)
O2—C131.381 (3)C8—H8A0.9700
O2—C161.421 (3)C8—H8B0.9700
N1—C71.283 (3)C9—C101.499 (3)
N1—C81.465 (3)C9—H9A0.9700
C1—C21.375 (4)C9—H9B0.9700
C1—C61.391 (3)C10—C111.391 (3)
C1—H1B0.9300C10—C151.394 (3)
C2—C31.368 (4)C11—C121.406 (3)
C2—H2A0.9300C12—C131.359 (3)
C3—C41.380 (4)C12—H12A0.9300
C3—H3A0.9300C13—C141.376 (3)
C4—C51.372 (3)C14—C151.364 (3)
C4—H4A0.9300C15—H15A0.9300
C5—C61.387 (3)C16—H16A0.9700
C5—H5A0.9300C16—H16B0.9700
C6—C71.487 (3)
C14—O1—C16105.44 (18)C10—C9—C8108.3 (2)
C13—O2—C16105.24 (18)C10—C9—H9A110.0
C7—N1—C8117.11 (19)C8—C9—H9A110.0
C2—C1—C6120.6 (3)C10—C9—H9B110.0
C2—C1—H1B119.7C8—C9—H9B110.0
C6—C1—H1B119.7H9A—C9—H9B108.4
C3—C2—C1120.9 (3)C11—C10—C15121.1 (2)
C3—C2—H2A119.6C11—C10—C9116.9 (2)
C1—C2—H2A119.6C15—C10—C9122.0 (2)
C2—C3—C4119.1 (3)C10—C11—C12120.3 (2)
C2—C3—H3A120.5C10—C11—C7117.7 (2)
C4—C3—H3A120.5C12—C11—C7121.8 (2)
C5—C4—C3120.5 (3)C13—C12—C11117.4 (2)
C5—C4—H4A119.7C13—C12—H12A121.3
C3—C4—H4A119.7C11—C12—H12A121.3
C4—C5—C6120.9 (2)C12—C13—C14121.9 (2)
C4—C5—H5A119.6C12—C13—O2128.3 (2)
C6—C5—H5A119.6C14—C13—O2109.77 (19)
C5—C6—C1118.0 (2)C15—C14—O1127.9 (2)
C5—C6—C7122.7 (2)C15—C14—C13122.1 (2)
C1—C6—C7119.0 (2)O1—C14—C13110.0 (2)
N1—C7—C11122.4 (2)C14—C15—C10117.2 (2)
N1—C7—C6116.7 (2)C14—C15—H15A121.4
C11—C7—C6120.8 (2)C10—C15—H15A121.4
N1—C8—C9112.5 (2)O2—C16—O1108.54 (19)
N1—C8—H8A109.1O2—C16—H16A110.0
C9—C8—H8A109.1O1—C16—H16A110.0
N1—C8—H8B109.1O2—C16—H16B110.0
C9—C8—H8B109.1O1—C16—H16B110.0
H8A—C8—H8B107.8H16A—C16—H16B108.4
C6—C1—C2—C3−0.1 (4)N1—C7—C11—C10−22.2 (4)
C1—C2—C3—C40.5 (5)C6—C7—C11—C10159.5 (2)
C2—C3—C4—C5−0.8 (5)N1—C7—C11—C12153.3 (3)
C3—C4—C5—C60.9 (4)C6—C7—C11—C12−25.0 (4)
C4—C5—C6—C1−0.5 (4)C10—C11—C12—C130.3 (4)
C4—C5—C6—C7−175.7 (2)C7—C11—C12—C13−175.0 (2)
C2—C1—C6—C50.1 (4)C11—C12—C13—C14−0.9 (4)
C2—C1—C6—C7175.6 (2)C11—C12—C13—O2179.4 (2)
C8—N1—C7—C112.5 (4)C16—O2—C13—C12−173.7 (3)
C8—N1—C7—C6−179.1 (2)C16—O2—C13—C146.5 (3)
C5—C6—C7—N1142.5 (3)C16—O1—C14—C15174.1 (3)
C1—C6—C7—N1−32.7 (3)C16—O1—C14—C13−5.3 (3)
C5—C6—C7—C11−39.2 (3)C12—C13—C14—C150.0 (4)
C1—C6—C7—C11145.6 (2)O2—C13—C14—C15179.8 (2)
C7—N1—C8—C937.6 (3)C12—C13—C14—O1179.4 (2)
N1—C8—C9—C10−56.4 (3)O2—C13—C14—O1−0.8 (3)
C8—C9—C10—C1137.8 (3)O1—C14—C15—C10−178.0 (2)
C8—C9—C10—C15−139.8 (3)C13—C14—C15—C101.3 (4)
C15—C10—C11—C121.0 (4)C11—C10—C15—C14−1.8 (4)
C9—C10—C11—C12−176.6 (2)C9—C10—C15—C14175.7 (2)
C15—C10—C11—C7176.5 (2)C13—O2—C16—O1−9.7 (3)
C9—C10—C11—C7−1.1 (3)C14—O1—C16—O29.3 (3)
D—H···AD—HH···AD···AD—H···A
C3—H3A···O2i0.932.553.465 (4)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3A⋯O2i0.932.553.465 (4)169

Symmetry code: (i) .

  3 in total

Review 1.  Beta-phenylethylamines and the isoquinoline alkaloids.

Authors:  K W Bentley
Journal:  Nat Prod Rep       Date:  2000-06       Impact factor: 13.423

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis of new dihydroindeno[1,2-c]isoquinoline and indenoisoquinolinium chloride topoisomerase I inhibitors having high in vivo anticancer activity in the hollow fiber animal model.

Authors:  Muthusamy Jayaraman; Brian M Fox; Melinda Hollingshead; Glenda Kohlhagen; Yves Pommier; Mark Cushman
Journal:  J Med Chem       Date:  2002-01-03       Impact factor: 7.446

  3 in total

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