Literature DB >> 21581148

catena-Poly[[[diiodidomercury(II)]-μ-N,N'-di-3-pyridylpyridine-2,6-dicarboxamide] dimethyl-formamide solvate].

Li-Hua Huang1, Jie Wu, Fang-Fang Pan.   

Abstract

In the title complex, {[HgI(2)(C(17)H(13)N(5)O(2))]·C(3)H(7)NO}(n), the Hg atom is coordinated by two I atoms and two N atoms from two different ligands in a distorted tetra-hedral environment. Hg atoms are bridged by N,N'-di-3-pyridylpyridine-2,6-dicarboxamide ligands, forming a helical chain running along the a axis.

Entities:  

Year:  2008        PMID: 21581148      PMCID: PMC2960109          DOI: 10.1107/S1600536808036581

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For binuclear complexes of N,N′-bis­(pyridin-3-yl)-2,6-pyridine­dicarboxamide, see: Baer et al. (2002 ▶); Huang & Wu (2008 ▶); Qin et al. (2003 ▶).

Experimental

Crystal data

[HgI2(C17H13N5O2)]·C3H7NO M = 846.81 Orthorhombic, a = 21.295 (4) Å b = 9.7177 (19) Å c = 24.440 (5) Å V = 5057.5 (17) Å3 Z = 8 Mo Kα radiation μ = 8.56 mm−1 T = 293 (2) K 0.20 × 0.18 × 0.08 mm

Data collection

Rigaku Saturn724 diffractometer Absorption correction: numerical (CrystalClear; Rigaku/MSC, 2006 ▶) T min = 0.279, T max = 0.547 48014 measured reflections 4447 independent reflections 4250 reflections with I > 2σ(I) R int = 0.073

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.119 S = 1.31 4447 reflections 291 parameters H-atom parameters constrained Δρmax = 1.21 e Å−3 Δρmin = −0.92 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2006 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808036581/hg2428sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808036581/hg2428Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[HgI2(C17H13N5O2)]·C3H7NOF000 = 3136
Mr = 846.81Dx = 2.224 Mg m3
Orthorhombic, PbcaMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 8721 reflections
a = 21.295 (4) Åθ = 3.2–26.0º
b = 9.7177 (19) ŵ = 8.56 mm1
c = 24.440 (5) ÅT = 293 (2) K
V = 5057.5 (17) Å3Prism, colorless
Z = 80.20 × 0.18 × 0.08 mm
Saturn724 diffractometer4447 independent reflections
Radiation source: fine-focus sealed tube4250 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.073
Detector resolution: 28.5714 pixels mm-1θmax = 25.0º
T = 291(2) Kθmin = 3.3º
dtprofit.ref scansh = −25→25
Absorption correction: Numerical(CrystalClear; Rigaku/MSC, 2006)k = −11→11
Tmin = 0.279, Tmax = 0.548l = −29→29
48014 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.062H-atom parameters constrained
wR(F2) = 0.119  w = 1/[σ2(Fo2) + (0.0319P)2 + 27.0127P] where P = (Fo2 + 2Fc2)/3
S = 1.31(Δ/σ)max = 0.001
4447 reflectionsΔρmax = 1.21 e Å3
291 parametersΔρmin = −0.92 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Hg10.374277 (19)0.12855 (4)0.670365 (18)0.05404 (16)
I10.34375 (4)−0.02626 (8)0.58368 (3)0.0644 (2)
I20.44953 (4)0.13315 (9)0.75677 (3)0.0709 (3)
O10.8018 (3)0.4961 (8)0.6739 (3)0.069 (2)
O20.5375 (3)0.7089 (8)0.5249 (3)0.065 (2)
O30.5923 (3)0.2832 (8)0.6383 (3)0.063 (2)
N10.7739 (4)0.2015 (9)0.7954 (4)0.053 (2)
N20.7026 (3)0.4172 (9)0.6896 (3)0.050 (2)
H20.66490.42230.67720.060*
N30.6581 (3)0.5688 (8)0.6070 (3)0.0432 (18)
N40.5345 (3)0.5356 (8)0.5879 (3)0.0450 (19)
H40.55810.48740.60910.054*
N50.3933 (4)0.3479 (7)0.6244 (4)0.047 (2)
N60.5553 (4)0.0721 (9)0.6163 (4)0.053 (2)
C10.7230 (5)0.1535 (11)0.8191 (5)0.059 (3)
H10.72740.09230.84810.070*
C20.6634 (5)0.1903 (12)0.8027 (4)0.056 (3)
H2A0.62810.15510.82020.067*
C30.6576 (4)0.2814 (10)0.7594 (4)0.048 (2)
H50.61810.30910.74730.057*
C40.7112 (4)0.3301 (10)0.7344 (4)0.044 (2)
C50.7690 (4)0.2899 (10)0.7538 (4)0.049 (2)
H30.80530.32470.73770.059*
C60.7461 (5)0.4951 (11)0.6630 (4)0.051 (3)
C70.7196 (4)0.5800 (10)0.6170 (4)0.048 (2)
C80.7579 (5)0.6690 (12)0.5882 (5)0.061 (3)
H80.80050.67560.59620.073*
C90.7315 (5)0.7476 (13)0.5473 (5)0.067 (3)
H90.75640.80690.52680.081*
C100.6680 (5)0.7383 (11)0.5367 (4)0.057 (3)
H100.64930.79220.50990.068*
C110.6331 (4)0.6463 (10)0.5674 (4)0.044 (2)
C120.5642 (5)0.6341 (10)0.5573 (4)0.048 (2)
C130.4705 (4)0.5039 (9)0.5891 (4)0.042 (2)
C140.4245 (5)0.5696 (11)0.5587 (5)0.054 (3)
H140.43450.64450.53670.065*
C150.3633 (5)0.5216 (12)0.5618 (5)0.063 (3)
H150.33140.56480.54220.075*
C160.3505 (5)0.4110 (12)0.5937 (5)0.059 (3)
H160.30960.37740.59420.071*
C170.4519 (5)0.3943 (10)0.6222 (4)0.050 (3)
H170.48200.35160.64390.061*
C180.5424 (7)0.1046 (15)0.5597 (5)0.091 (4)
H18A0.49900.08630.55190.136*
H18B0.56830.04890.53650.136*
H18C0.55110.20010.55320.136*
C190.5445 (6)−0.0682 (12)0.6371 (6)0.081 (4)
H19A0.5770−0.12810.62390.121*
H19B0.5045−0.10080.62450.121*
H19C0.5450−0.06720.67630.121*
C200.5801 (4)0.1635 (10)0.6498 (4)0.047 (2)
H200.58910.13450.68520.057*
U11U22U33U12U13U23
Hg10.0468 (3)0.0576 (3)0.0577 (3)−0.00017 (19)0.00731 (19)−0.0057 (2)
I10.0753 (5)0.0618 (5)0.0562 (5)−0.0038 (4)0.0088 (4)−0.0071 (4)
I20.0654 (5)0.0874 (6)0.0599 (5)−0.0060 (4)−0.0026 (4)−0.0047 (4)
O10.039 (4)0.085 (6)0.083 (6)−0.017 (4)−0.016 (4)0.029 (4)
O20.068 (5)0.063 (5)0.066 (5)−0.002 (4)−0.015 (4)0.024 (4)
O30.047 (4)0.058 (5)0.084 (6)−0.006 (4)−0.013 (4)0.012 (4)
N10.045 (5)0.055 (5)0.058 (6)−0.002 (4)−0.011 (4)0.010 (4)
N20.033 (4)0.057 (5)0.060 (5)−0.003 (4)−0.007 (4)0.017 (4)
N30.040 (4)0.044 (4)0.046 (5)−0.005 (4)0.000 (4)0.003 (4)
N40.044 (4)0.051 (5)0.040 (5)0.000 (4)−0.007 (4)0.013 (4)
N50.038 (4)0.037 (4)0.066 (6)0.000 (3)−0.007 (4)0.003 (4)
N60.049 (5)0.055 (5)0.054 (6)0.008 (4)−0.005 (4)−0.003 (4)
C10.044 (6)0.062 (7)0.070 (8)−0.005 (5)−0.001 (5)0.017 (6)
C20.045 (6)0.076 (7)0.046 (6)−0.010 (5)0.013 (5)0.010 (6)
C30.029 (5)0.055 (6)0.060 (7)−0.003 (4)−0.003 (4)0.004 (5)
C40.042 (5)0.044 (5)0.045 (6)0.001 (4)−0.005 (4)−0.002 (4)
C50.036 (5)0.054 (6)0.058 (6)0.000 (5)−0.007 (5)0.006 (5)
C60.042 (6)0.059 (6)0.051 (6)−0.007 (5)0.001 (5)0.011 (5)
C70.035 (5)0.055 (6)0.055 (6)−0.013 (5)0.003 (4)0.003 (5)
C80.044 (6)0.076 (7)0.062 (7)−0.020 (5)−0.002 (5)0.014 (6)
C90.062 (7)0.079 (8)0.061 (7)−0.022 (6)0.006 (6)0.022 (6)
C100.069 (7)0.053 (6)0.048 (6)−0.013 (5)−0.009 (5)0.013 (5)
C110.053 (6)0.049 (6)0.030 (5)−0.005 (5)0.000 (4)0.008 (4)
C120.059 (6)0.048 (6)0.037 (6)0.003 (5)−0.005 (5)0.005 (5)
C130.035 (5)0.047 (5)0.043 (5)0.008 (4)−0.008 (4)−0.004 (4)
C140.047 (6)0.049 (6)0.067 (7)0.007 (5)−0.003 (5)0.006 (5)
C150.060 (7)0.065 (7)0.063 (8)0.009 (6)−0.020 (6)0.008 (6)
C160.039 (5)0.065 (7)0.073 (8)0.004 (5)−0.007 (5)−0.003 (6)
C170.045 (6)0.047 (6)0.060 (7)0.005 (5)−0.007 (5)0.009 (5)
C180.110 (11)0.111 (12)0.052 (8)0.000 (9)−0.008 (7)−0.003 (8)
C190.081 (9)0.050 (7)0.111 (11)0.002 (6)0.006 (8)−0.011 (7)
C200.039 (5)0.046 (6)0.057 (6)0.009 (5)−0.005 (5)0.003 (5)
Hg1—N1i2.403 (8)C3—H50.9300
Hg1—N52.444 (8)C4—C51.377 (12)
Hg1—I22.6514 (10)C5—H30.9300
Hg1—I12.6785 (10)C6—C71.504 (14)
O1—C61.215 (12)C7—C81.381 (14)
O2—C121.217 (11)C8—C91.380 (15)
O3—C201.225 (11)C8—H80.9300
N1—C11.314 (13)C9—C101.378 (14)
N1—C51.335 (12)C9—H90.9300
N1—Hg1ii2.403 (8)C10—C111.384 (13)
N2—C61.362 (12)C10—H100.9300
N2—C41.395 (12)C11—C121.492 (13)
N2—H20.8600C13—C141.387 (13)
N3—C71.336 (11)C13—C171.395 (13)
N3—C111.337 (11)C14—C151.387 (14)
N4—C121.370 (12)C14—H140.9300
N4—C131.396 (11)C15—C161.356 (16)
N4—H40.8600C15—H150.9300
N5—C171.327 (12)C16—H160.9300
N5—C161.330 (13)C17—H170.9300
N6—C201.318 (13)C18—H18A0.9600
N6—C181.445 (15)C18—H18B0.9600
N6—C191.473 (14)C18—H18C0.9600
C1—C21.379 (14)C19—H19A0.9600
C1—H10.9300C19—H19B0.9600
C2—C31.386 (14)C19—H19C0.9600
C2—H2A0.9300C20—H200.9300
C3—C41.378 (13)
N1i—Hg1—N592.9 (3)C9—C8—H8120.8
N1i—Hg1—I2104.8 (2)C7—C8—H8120.8
N5—Hg1—I2104.57 (19)C10—C9—C8119.9 (10)
N1i—Hg1—I1103.0 (2)C10—C9—H9120.0
N5—Hg1—I199.6 (2)C8—C9—H9120.0
I2—Hg1—I1141.83 (3)C9—C10—C11117.9 (10)
C1—N1—C5120.1 (9)C9—C10—H10121.0
C1—N1—Hg1ii118.3 (7)C11—C10—H10121.0
C5—N1—Hg1ii121.6 (6)N3—C11—C10122.8 (9)
C6—N2—C4128.5 (8)N3—C11—C12117.9 (8)
C6—N2—H2115.7C10—C11—C12119.3 (9)
C4—N2—H2115.7O2—C12—N4123.9 (9)
C7—N3—C11118.5 (8)O2—C12—C11121.3 (9)
C12—N4—C13128.1 (8)N4—C12—C11114.8 (8)
C12—N4—H4116.0C14—C13—C17117.5 (9)
C13—N4—H4116.0C14—C13—N4125.2 (9)
C17—N5—C16117.8 (9)C17—C13—N4117.3 (8)
C17—N5—Hg1118.0 (6)C13—C14—C15118.7 (10)
C16—N5—Hg1123.2 (7)C13—C14—H14120.6
C20—N6—C18121.6 (10)C15—C14—H14120.6
C20—N6—C19118.2 (10)C16—C15—C14119.2 (10)
C18—N6—C19120.1 (10)C16—C15—H15120.4
N1—C1—C2122.6 (10)C14—C15—H15120.4
N1—C1—H1118.7N5—C16—C15123.5 (10)
C2—C1—H1118.7N5—C16—H16118.3
C1—C2—C3118.1 (9)C15—C16—H16118.3
C1—C2—H2A121.0N5—C17—C13123.3 (9)
C3—C2—H2A121.0N5—C17—H17118.3
C4—C3—C2119.0 (9)C13—C17—H17118.3
C4—C3—H5120.5N6—C18—H18A109.5
C2—C3—H5120.5N6—C18—H18B109.5
C5—C4—C3119.4 (9)H18A—C18—H18B109.5
C5—C4—N2124.0 (9)N6—C18—H18C109.5
C3—C4—N2116.6 (8)H18A—C18—H18C109.5
N1—C5—C4120.9 (9)H18B—C18—H18C109.5
N1—C5—H3119.5N6—C19—H19A109.5
C4—C5—H3119.5N6—C19—H19B109.5
O1—C6—N2124.3 (9)H19A—C19—H19B109.5
O1—C6—C7121.7 (9)N6—C19—H19C109.5
N2—C6—C7114.0 (8)H19A—C19—H19C109.5
N3—C7—C8122.4 (10)H19B—C19—H19C109.5
N3—C7—C6117.4 (8)O3—C20—N6125.7 (10)
C8—C7—C6120.2 (9)O3—C20—H20117.2
C9—C8—C7118.4 (10)N6—C20—H20117.2
N1i—Hg1—N5—C17145.4 (8)C6—C7—C8—C9−178.4 (11)
I2—Hg1—N5—C1739.3 (8)C7—C8—C9—C101.3 (19)
I1—Hg1—N5—C17−110.8 (7)C8—C9—C10—C11−1.5 (18)
N1i—Hg1—N5—C16−46.3 (9)C7—N3—C11—C10−0.6 (15)
I2—Hg1—N5—C16−152.4 (8)C7—N3—C11—C12−179.1 (9)
I1—Hg1—N5—C1657.4 (8)C9—C10—C11—N31.2 (16)
C5—N1—C1—C20.2 (17)C9—C10—C11—C12179.7 (10)
Hg1ii—N1—C1—C2179.4 (9)C13—N4—C12—O2−1.3 (17)
N1—C1—C2—C30.2 (17)C13—N4—C12—C11177.4 (9)
C1—C2—C3—C40.5 (16)N3—C11—C12—O2174.3 (10)
C2—C3—C4—C5−1.5 (15)C10—C11—C12—O2−4.3 (15)
C2—C3—C4—N2177.5 (9)N3—C11—C12—N4−4.4 (13)
C6—N2—C4—C5−11.9 (17)C10—C11—C12—N4177.0 (9)
C6—N2—C4—C3169.2 (10)C12—N4—C13—C14−0.5 (16)
C1—N1—C5—C4−1.2 (15)C12—N4—C13—C17177.3 (10)
Hg1ii—N1—C5—C4179.6 (7)C17—C13—C14—C15−1.4 (15)
C3—C4—C5—N11.9 (15)N4—C13—C14—C15176.4 (10)
N2—C4—C5—N1−177.1 (9)C13—C14—C15—C16−1.0 (17)
C4—N2—C6—O12.9 (18)C17—N5—C16—C15−1.8 (17)
C4—N2—C6—C7−178.4 (9)Hg1—N5—C16—C15−170.1 (9)
C11—N3—C7—C80.3 (15)C14—C15—C16—N52.7 (19)
C11—N3—C7—C6178.0 (9)C16—N5—C17—C13−0.9 (15)
O1—C6—C7—N3177.9 (10)Hg1—N5—C17—C13168.1 (8)
N2—C6—C7—N3−0.9 (14)C14—C13—C17—N52.4 (15)
O1—C6—C7—C8−4.3 (17)N4—C13—C17—N5−175.6 (9)
N2—C6—C7—C8176.9 (10)C18—N6—C20—O33.1 (16)
N3—C7—C8—C9−0.7 (18)C19—N6—C20—O3179.3 (10)
D—H···AD—HH···AD···AD—H···A
N4—H4···O30.862.233.008 (10)150
N2—H2···O30.862.262.964 (10)139
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4⋯O30.862.233.008 (10)150
N2—H2⋯O30.862.262.964 (10)139
  4 in total

1.  Dynamic behavior in diplatinum metalloreceptors.

Authors:  Andrew J Baer; Bryan D Koivisto; Adrien P Côté; Nicholas J Taylor; Garry S Hanan; Hélène Nierengarten; Alain Van Dorsselaer
Journal:  Inorg Chem       Date:  2002-10-07       Impact factor: 5.165

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Bis(μ-N,N'-di-3-pyridyl-2,6-pyridine-2,6-dicarboxamide-κN:N')bis[dibrom-ido-mercury(II)] N,N-dimethyl-formamide disolvate.

Authors:  Li-Hua Huang; Jie Wu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-13

4.  Self-assembly in palladium(II) and platinum(II) chemistry: the biomimetic approach.

Authors:  Zengquan Qin; Michael C Jennings; Richard J Puddephatt
Journal:  Inorg Chem       Date:  2003-03-24       Impact factor: 5.165

  4 in total

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