Literature DB >> 21581127

(Croconato-κO,O')bis-(1,10-phenanthroline-κN,N')zinc(II).

Hongyu Chen, Ping Li, Lihua Dong, Xiaohui Zhu, Qi Fang.   

Abstract

In the title compound, [Zn(C(5)O(5))(C(12)H(8)N(2))(2)], the Zn atom is in a slightly distorted octa-hedral environment. The mol-ecule lies across a twofold rotation axis, around which two 1,10-phenanthroline ligands are arranged. There are short contacts between the 1,10-phenanthroline groups and the O atoms of the croconate ligand, which probably stabilize the crystal structure via weak C-H⋯O interactions.

Entities:  

Year:  2008        PMID: 21581127      PMCID: PMC2960028          DOI: 10.1107/S1600536808033709

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Braga et al. (2002 ▶); Carranza et al. (2004 ▶); Castro et al. (1992 ▶, 2002 ▶); Chen et al. (2005 ▶, 2007 ▶, 2008 ▶); Faus et al. (1994 ▶); Maji et al. (2003 ▶); Seitz & Imming (1992 ▶); Sletten et al. (1998 ▶); Wang et al. (2002 ▶).

Experimental

Crystal data

[Zn(C5O5)(C12H8N2)2] M = 565.83 Orthorhombic, a = 12.2605 (4) Å b = 11.0133 (3) Å c = 17.2745 (5) Å V = 2332.55 (12) Å3 Z = 4 Mo Kα radiation μ = 1.11 mm−1 T = 293 (2) K 0.28 × 0.23 × 0.15 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (APEX2; Bruker, 2005 ▶) T min = 0.743, T max = 0.782 (expected range = 0.805–0.847) 9769 measured reflections 2627 independent reflections 2164 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.096 S = 1.28 2627 reflections 179 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.32 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2; data reduction: APEX2; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808033709/sg2254sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808033709/sg2254Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C5O5)(C12H8N2)2]F000 = 1152
Mr = 565.83Dx = 1.611 Mg m3
Orthorhombic, PbcnMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2n 2abCell parameters from 3967 reflections
a = 12.2605 (4) Åθ = 2.8–27.5º
b = 11.0133 (3) ŵ = 1.11 mm1
c = 17.2745 (5) ÅT = 293 (2) K
V = 2332.55 (12) Å3Prism, yellow
Z = 40.28 × 0.23 × 0.15 mm
Bruker APEXII CCD area-detector diffractometer2627 independent reflections
Radiation source: fine-focus sealed tube2164 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.019
Detector resolution: 10.0 pixels mm-1θmax = 27.6º
T = 295(2) Kθmin = 2.4º
φ and ω scansh = −15→14
Absorption correction: multi-scan(APEX2; Bruker, 2005)k = −14→13
Tmin = 0.743, Tmax = 0.782l = −21→21
9769 measured reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.029  w = 1/[σ2(Fo2) + (0.0414P)2 + 0.6435P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.096(Δ/σ)max < 0.001
S = 1.28Δρmax = 0.29 e Å3
2627 reflectionsΔρmin = −0.32 e Å3
179 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0037 (5)
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C11.14583 (16)−0.08987 (18)0.66696 (12)0.0370 (4)
H11.1977−0.07250.70470.044*
C21.17077 (19)−0.1768 (2)0.61125 (13)0.0442 (5)
H21.2374−0.21710.61230.053*
C31.09642 (18)−0.20164 (18)0.55543 (12)0.0411 (5)
H31.1121−0.25980.51800.049*
C40.99594 (16)−0.14043 (18)0.55356 (12)0.0346 (4)
C50.97663 (15)−0.05585 (16)0.61341 (10)0.0284 (4)
C60.91524 (18)−0.15647 (19)0.49514 (12)0.0406 (5)
H60.9282−0.21100.45510.049*
C70.82034 (19)−0.09419 (19)0.49667 (13)0.0434 (5)
H70.7700−0.10510.45700.052*
C80.79598 (16)−0.01181 (19)0.55831 (11)0.0371 (4)
C90.87469 (15)0.00774 (16)0.61615 (11)0.0305 (4)
C100.69824 (18)0.0534 (2)0.56380 (14)0.0503 (6)
H100.64430.04380.52640.060*
C110.68264 (19)0.1309 (2)0.62399 (15)0.0535 (6)
H110.61770.17400.62810.064*
C120.76426 (18)0.1457 (2)0.67964 (13)0.0460 (5)
H120.75220.19850.72080.055*
C130.96697 (16)0.35065 (18)0.78378 (11)0.0334 (4)
C140.94811 (17)0.47521 (18)0.80990 (13)0.0409 (5)
C151.00000.5549 (3)0.75000.0419 (7)
N11.05186 (12)−0.03074 (13)0.66885 (9)0.0290 (3)
N20.85892 (13)0.08653 (15)0.67547 (9)0.0352 (4)
O10.93325 (12)0.25245 (13)0.81491 (8)0.0415 (3)
O20.89952 (16)0.50881 (16)0.86832 (11)0.0659 (5)
O31.00000.6664 (2)0.75000.0560 (7)
Zn11.00000.10546 (3)0.75000.03197 (13)
U11U22U33U12U13U23
C10.0350 (10)0.0405 (11)0.0355 (11)0.0036 (8)−0.0035 (8)0.0000 (8)
C20.0441 (11)0.0421 (11)0.0465 (13)0.0118 (9)0.0055 (10)−0.0014 (9)
C30.0551 (13)0.0326 (10)0.0356 (11)0.0030 (9)0.0093 (9)−0.0061 (9)
C40.0457 (11)0.0278 (8)0.0302 (10)−0.0086 (8)0.0057 (8)−0.0008 (8)
C50.0348 (9)0.0270 (9)0.0235 (9)−0.0044 (7)−0.0003 (7)0.0029 (7)
C60.0579 (13)0.0387 (11)0.0253 (10)−0.0166 (10)−0.0015 (9)−0.0029 (8)
C70.0504 (12)0.0458 (12)0.0340 (12)−0.0204 (10)−0.0078 (9)0.0041 (9)
C80.0347 (9)0.0427 (11)0.0340 (11)−0.0090 (8)−0.0040 (8)0.0107 (8)
C90.0325 (9)0.0317 (9)0.0275 (10)−0.0034 (7)0.0032 (7)0.0062 (7)
C100.0369 (11)0.0632 (15)0.0507 (14)−0.0041 (10)−0.0093 (10)0.0208 (12)
C110.0378 (11)0.0656 (15)0.0572 (15)0.0163 (11)0.0031 (10)0.0239 (13)
C120.0486 (12)0.0514 (13)0.0380 (12)0.0166 (10)0.0035 (9)0.0067 (10)
C130.0377 (9)0.0342 (10)0.0283 (10)−0.0010 (8)0.0009 (8)−0.0019 (8)
C140.0403 (11)0.0357 (10)0.0468 (13)0.0004 (9)0.0011 (9)−0.0078 (9)
C150.0364 (14)0.0334 (15)0.056 (2)0.000−0.0102 (13)0.000
N10.0323 (8)0.0298 (8)0.0250 (8)0.0014 (6)0.0021 (6)0.0004 (6)
N20.0361 (8)0.0388 (9)0.0307 (9)0.0075 (7)0.0039 (7)0.0040 (7)
O10.0567 (9)0.0360 (7)0.0320 (8)−0.0025 (6)0.0138 (6)0.0001 (6)
O20.0795 (12)0.0528 (10)0.0653 (12)−0.0019 (9)0.0307 (10)−0.0207 (9)
O30.0662 (16)0.0286 (11)0.0731 (18)0.000−0.0109 (12)0.000
Zn10.0409 (2)0.03008 (19)0.0249 (2)0.0000.00062 (12)0.000
C1—N11.324 (2)C10—H100.9300
C1—C21.391 (3)C11—C121.397 (3)
C1—H10.9300C11—H110.9300
C2—C31.355 (3)C12—N21.333 (3)
C2—H20.9300C12—H120.9300
C3—C41.405 (3)C13—O11.277 (2)
C3—H30.9300C13—C13i1.420 (4)
C4—C51.412 (3)C13—C141.462 (3)
C4—C61.424 (3)C14—O21.229 (3)
C5—N11.358 (2)C14—C151.498 (3)
C5—C91.433 (3)C15—O31.229 (4)
C6—C71.351 (3)C15—C14i1.498 (3)
C6—H60.9300N1—Zn12.1493 (15)
C7—C81.430 (3)N2—Zn12.1664 (17)
C7—H70.9300O1—Zn12.1325 (14)
C8—C101.400 (3)Zn1—O1i2.1325 (14)
C8—C91.406 (3)Zn1—N1i2.1493 (15)
C9—N21.357 (2)Zn1—N2i2.1664 (17)
C10—C111.359 (4)
N1—C1—C2123.14 (19)N2—C12—H12119.0
N1—C1—H1118.4C11—C12—H12119.0
C2—C1—H1118.4O1—C13—C13i122.05 (11)
C3—C2—C1118.91 (19)O1—C13—C14127.84 (18)
C3—C2—H2120.5C13i—C13—C14110.10 (12)
C1—C2—H2120.5O2—C14—C13127.8 (2)
C2—C3—C4120.63 (19)O2—C14—C15126.6 (2)
C2—C3—H3119.7C13—C14—C15105.61 (19)
C4—C3—H3119.7O3—C15—C14i125.84 (13)
C3—C4—C5116.54 (18)O3—C15—C14125.84 (13)
C3—C4—C6124.48 (19)C14i—C15—C14108.3 (3)
C5—C4—C6118.96 (18)C1—N1—C5118.26 (17)
N1—C5—C4122.48 (17)C1—N1—Zn1128.09 (13)
N1—C5—C9118.00 (17)C5—N1—Zn1113.65 (12)
C4—C5—C9119.52 (17)C12—N2—C9118.54 (18)
C7—C6—C4121.43 (19)C12—N2—Zn1128.01 (15)
C7—C6—H6119.3C9—N2—Zn1113.37 (12)
C4—C6—H6119.3C13—O1—Zn1107.30 (12)
C6—C7—C8121.09 (19)O1—Zn1—O1i81.23 (7)
C6—C7—H7119.5O1—Zn1—N1170.49 (6)
C8—C7—H7119.5O1i—Zn1—N194.20 (5)
C10—C8—C9117.4 (2)O1—Zn1—N1i94.20 (5)
C10—C8—C7123.7 (2)O1i—Zn1—N1i170.49 (6)
C9—C8—C7118.88 (19)N1—Zn1—N1i91.48 (8)
N2—C9—C8122.48 (18)O1—Zn1—N294.54 (6)
N2—C9—C5117.50 (17)O1i—Zn1—N293.84 (6)
C8—C9—C5120.02 (18)N1—Zn1—N277.37 (6)
C11—C10—C8119.6 (2)N1i—Zn1—N294.83 (6)
C11—C10—H10120.2O1—Zn1—N2i93.84 (6)
C8—C10—H10120.2O1i—Zn1—N2i94.54 (6)
C10—C11—C12119.9 (2)N1—Zn1—N2i94.83 (6)
C10—C11—H11120.0N1i—Zn1—N2i77.37 (6)
C12—C11—H11120.0N2—Zn1—N2i168.95 (9)
N2—C12—C11121.9 (2)
D—H···AD—HH···AD···AD—H···A
C6—H6···O1ii0.932.473.295 (2)149
C11—H11···O3iii0.932.553.147 (2)122
Table 1

Selected bond lengths (Å)

N1—Zn12.1493 (15)
N2—Zn12.1664 (17)
O1—Zn12.1325 (14)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C6—H6⋯O1i0.932.473.295 (2)149
C11—H11⋯O3ii0.932.553.147 (2)122

Symmetry codes: (i) ; (ii) .

  7 in total

1.  Synthesis and structural characterization of [Na(2)M(C(5)O(5))(2)(H(2)O)(2)] x 4H(2)O (M = Ni(II), Cu(II)).

Authors:  Chih-Chieh Wang; Cheng-Han Yang; Gene-Hsiang Lee
Journal:  Inorg Chem       Date:  2002-02-25       Impact factor: 5.165

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Poly[[di-mu2-aqua-di-mu5-croconato(2-)-nickel(II)dipotassium(I)] tetrahydrate].

Authors:  Hong-Yu Chen; Qi Fang; Gang Xue; Wen-Tao Yu
Journal:  Acta Crystallogr C       Date:  2005-11-19       Impact factor: 1.172

4.  Croconic acid and alkali metal croconate salts: some new insights into an old story.

Authors:  Dario Braga; Lucia Maini; Fabrizia Grepioni
Journal:  Chemistry       Date:  2002-04-15       Impact factor: 5.236

5.  Mono-, di- and trinuclear 2,3,5,6-tetrakis(2-pyridyl)pyrazine (tppz)-containing copper(II) complexes: syntheses, crystal structures and magnetic properties.

Authors:  José Carranza; Jorunn Sletten; Conor Brennan; Francesc Lloret; Joan Cano; Miguel Julve
Journal:  Dalton Trans       Date:  2004-10-29       Impact factor: 4.390

6.  (Croconato-κO,O')bis-(1,10-phenanthroline-κN,N')manganese(II).

Authors:  Hong-Feng Chen; Hong-Yu Chen; Xia Chen; Andrei S Batsanov; Qi Fang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-12

7.  (Croconato-kappa2O,O')bis(1,10-phenanthroline-kappa2N,N')cobalt(II), and the nickel(II) and copper(II) analogues.

Authors:  Xia Chen; Hong-Feng Chen; Gang Xue; Hong-Yu Chen; Wen-Tao Yu; Qi Fang
Journal:  Acta Crystallogr C       Date:  2007-03-31       Impact factor: 1.172

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.