Literature DB >> 21581117

(Formato-κO)bis-(1,10-phenanthroline-κN,N')copper(II) formate hexa-hydrate.

Wei Xu1, Jian-Li Lin, Hong-Zhen Xie, Ming Zhang.   

Abstract

In the title compound, [Cu(CHO(2))(C(12)H(8)N(2))(2)]CHO(2)·6H(2)O, the Cu atom is coordinated in a distorted trigonal-bipyramidal fashion by an O atom of the formate ligand and four N atoms of two phenanthroline ligands with Cu-O and Cu-N distances of 2.020 (3) and 1.978 (3)-2.177 (3) Å, respectively. Hydrogen bonding O-H⋯O between water molecules and between water anions as well as π-π inter-actions [centroid-centroid distances between phen rings = 3.38 (7) and 3.40 (5) Å] are responsible for the supra-molecular assembly.

Entities:  

Year:  2008        PMID: 21581117      PMCID: PMC2960151          DOI: 10.1107/S1600536808035320

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For backgorund on the utilization of formic acid for the rational design and synthesis of coordination polymers and the potential applications of these compounds, see: Dybtsev et al. (2003 ▶); Manson et al. (2003 ▶); Wang et al. (2005 ▶, 2006 ▶).

Experimental

Crystal data

[Cu(CHO2)(C12H8N2)2]CHO2·6H2O M = 622.09 Monoclinic, a = 14.765 (3) Å b = 12.764 (3) Å c = 15.513 (3) Å β = 109.76 (3)° V = 2751.4 (11) Å3 Z = 4 Mo Kα radiation μ = 0.86 mm−1 T = 295 (2) K 0.43 × 0.29 × 0.22 mm

Data collection

Bruker P4 diffractometer Absorption correction: ψ scan (XSCANS; Siemens, 1996 ▶) T min = 0.740, T max = 0.819 5942 measured reflections 4812 independent reflections 3341 reflections with I > 2σ(I) R int = 0.068 3 standard reflections every 97 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.163 S = 1.11 4812 reflections 372 parameters H-atom parameters constrained Δρmax = 0.67 e Å−3 Δρmin = −0.76 e Å−3 Data collection: XSCANS (Siemens, 1996 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808035320/pk2125sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808035320/pk2125Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(CHO2)(C12H8N2)2]CHO2·6H2OF000 = 1292
Mr = 622.09Dx = 1.502 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 25 reflections
a = 14.765 (3) Åθ = 5.0–12.5º
b = 12.764 (3) ŵ = 0.86 mm1
c = 15.513 (3) ÅT = 295 (2) K
β = 109.76 (3)ºBlock, blue
V = 2751.4 (11) Å30.43 × 0.29 × 0.22 mm
Z = 4
Bruker P4 diffractometerRint = 0.068
Radiation source: fine-focus sealed tubeθmax = 25.0º
Monochromator: graphiteθmin = 1.7º
T = 295(2) Kh = −1→17
θ/2θ scansk = −1→15
Absorption correction: ψ scan(XSCANS; Siemens, 1996)l = −18→17
Tmin = 0.740, Tmax = 0.8193 standard reflections
5942 measured reflections every 97 reflections
4812 independent reflections intensity decay: none
3341 reflections with I > 2σ(I)
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.053  w = 1/[σ2(Fo2) + (0.0836P)2 + 2.1346P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.163(Δ/σ)max < 0.001
S = 1.11Δρmax = 0.67 e Å3
4812 reflectionsΔρmin = −0.76 e Å3
372 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0091 (10)
Secondary atom site location: difference Fourier map
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu0.64373 (3)0.25126 (4)0.01020 (3)0.0379 (2)
N10.7686 (2)0.3308 (2)0.0792 (2)0.0375 (7)
N20.6376 (2)0.2407 (2)0.1353 (2)0.0396 (7)
C10.8348 (3)0.3739 (3)0.0496 (3)0.0478 (10)
H1A0.82520.3736−0.01290.057*
C20.9184 (3)0.4195 (3)0.1096 (3)0.0563 (11)
H2A0.96430.44710.08710.068*
C30.9326 (3)0.4234 (3)0.2005 (3)0.0558 (11)
H3A0.98810.45400.24050.067*
C40.8635 (3)0.3813 (3)0.2342 (3)0.0436 (9)
C50.8705 (4)0.3821 (4)0.3286 (3)0.0580 (12)
H5C0.92460.41120.37190.070*
C60.8005 (3)0.3416 (4)0.3557 (3)0.0558 (11)
H6C0.80560.34600.41710.067*
C70.7191 (3)0.2924 (3)0.2925 (2)0.0447 (9)
C80.6439 (4)0.2461 (4)0.3157 (3)0.0568 (12)
H8C0.64460.24810.37580.068*
C90.5702 (4)0.1984 (4)0.2498 (3)0.0592 (12)
H9C0.52090.16670.26500.071*
C100.5685 (3)0.1968 (4)0.1599 (3)0.0531 (10)
H10C0.51740.16420.11550.064*
C110.7114 (3)0.2880 (3)0.2003 (2)0.0359 (8)
C120.7831 (3)0.3341 (3)0.1702 (2)0.0357 (8)
N30.5138 (2)0.3447 (2)−0.0467 (2)0.0414 (7)
N40.6447 (2)0.2693 (2)−0.1166 (2)0.0393 (7)
C130.4500 (3)0.3792 (3)−0.0117 (3)0.0532 (10)
H13A0.46350.37370.05120.064*
C140.3627 (3)0.4240 (4)−0.0651 (4)0.0647 (13)
H14A0.31860.4462−0.03810.078*
C150.3430 (4)0.4348 (3)−0.1563 (4)0.0661 (13)
H15A0.28510.4648−0.19220.079*
C160.4094 (3)0.4007 (3)−0.1966 (3)0.0526 (11)
C170.3954 (4)0.4059 (4)−0.2923 (3)0.0679 (15)
H17A0.33930.4362−0.33160.081*
C180.4601 (4)0.3687 (4)−0.3271 (3)0.0656 (14)
H18A0.44800.3730−0.38980.079*
C190.5478 (3)0.3223 (3)−0.2694 (3)0.0514 (11)
C200.6173 (4)0.2797 (4)−0.3019 (3)0.0608 (13)
H20A0.60900.2827−0.36400.073*
C210.6962 (4)0.2345 (3)−0.2430 (3)0.0596 (13)
H21A0.74260.2059−0.26430.072*
C220.7083 (4)0.2306 (3)−0.1504 (3)0.0520 (11)
H22A0.76350.1994−0.11060.062*
C230.5649 (3)0.3155 (3)−0.1749 (2)0.0392 (9)
C240.4947 (3)0.3552 (3)−0.1378 (2)0.0384 (8)
C250.6441 (4)0.0437 (3)−0.0195 (3)0.0552 (11)
H250.6237−0.0242−0.03780.066*
O10.5806 (2)0.1097 (2)−0.02386 (19)0.0543 (7)
O20.7306 (2)0.0600 (3)0.0067 (2)0.0683 (9)
C260.1997 (4)0.5352 (4)0.2316 (3)0.0618 (12)
H260.24530.51240.28590.074*
O30.1314 (3)0.5838 (3)0.2400 (3)0.0798 (10)
O40.2164 (3)0.5125 (3)0.1609 (2)0.0796 (11)
O50.1030 (3)0.9175 (3)0.3028 (3)0.0833 (11)
O60.0247 (3)0.6818 (3)0.0693 (2)0.0770 (10)
O70.1697 (3)0.3535 (3)0.0289 (2)0.0729 (10)
O80.1647 (3)0.7213 (3)0.3948 (2)0.0719 (9)
O90.1259 (3)1.0518 (3)0.0279 (2)0.0885 (12)
O100.0479 (3)0.8961 (3)0.1125 (3)0.0831 (11)
H5A0.11690.85620.31550.100*
H5B0.14480.95210.31370.100*
H6A0.04820.64570.10740.100*
H6B0.05140.73990.08960.100*
H7A0.17000.41140.06160.100*
H7B0.11780.35520.00520.100*
H8A0.17460.68090.35760.100*
H8B0.21540.73540.42640.100*
H9A0.16691.03650.01260.100*
H9B0.09051.0691−0.02410.100*
H10A0.04780.91980.16400.100*
H10B0.07070.94180.08850.100*
U11U22U33U12U13U23
Cu0.0408 (3)0.0447 (3)0.0282 (3)−0.0022 (2)0.0116 (2)0.00049 (18)
N10.0403 (17)0.0364 (16)0.0372 (16)0.0011 (14)0.0149 (13)0.0014 (13)
N20.0380 (17)0.0473 (18)0.0350 (16)−0.0030 (14)0.0141 (13)0.0018 (13)
C10.054 (2)0.045 (2)0.049 (2)−0.0029 (19)0.0223 (19)0.0063 (18)
C20.048 (2)0.050 (2)0.076 (3)−0.005 (2)0.028 (2)0.004 (2)
C30.043 (2)0.047 (2)0.072 (3)−0.0049 (19)0.010 (2)−0.008 (2)
C40.041 (2)0.036 (2)0.048 (2)0.0021 (17)0.0074 (18)−0.0051 (17)
C50.065 (3)0.054 (3)0.040 (2)0.007 (2)−0.003 (2)−0.0094 (19)
C60.070 (3)0.060 (3)0.032 (2)0.006 (2)0.011 (2)−0.0045 (19)
C70.057 (2)0.046 (2)0.0314 (19)0.0104 (19)0.0154 (18)0.0028 (17)
C80.071 (3)0.069 (3)0.040 (2)0.007 (2)0.032 (2)0.009 (2)
C90.067 (3)0.069 (3)0.052 (3)−0.008 (2)0.034 (2)0.010 (2)
C100.050 (2)0.064 (3)0.048 (2)−0.010 (2)0.021 (2)0.001 (2)
C110.039 (2)0.0367 (18)0.0308 (18)0.0066 (16)0.0103 (16)0.0029 (15)
C120.039 (2)0.0308 (17)0.0362 (18)0.0061 (16)0.0116 (16)0.0012 (15)
N30.0456 (18)0.0380 (17)0.0403 (17)0.0032 (14)0.0142 (15)0.0006 (13)
N40.0449 (18)0.0409 (17)0.0354 (16)−0.0010 (14)0.0181 (14)0.0006 (13)
C130.058 (3)0.047 (2)0.060 (3)0.002 (2)0.027 (2)−0.005 (2)
C140.054 (3)0.051 (3)0.095 (4)0.007 (2)0.033 (3)−0.010 (3)
C150.055 (3)0.041 (2)0.091 (4)0.006 (2)0.009 (3)0.007 (2)
C160.051 (2)0.033 (2)0.061 (3)−0.0014 (18)0.003 (2)0.0078 (19)
C170.080 (4)0.045 (3)0.051 (3)−0.003 (2)−0.012 (3)0.018 (2)
C180.091 (4)0.056 (3)0.035 (2)−0.015 (3)0.002 (2)0.009 (2)
C190.079 (3)0.041 (2)0.0320 (19)−0.018 (2)0.015 (2)−0.0006 (17)
C200.103 (4)0.051 (2)0.036 (2)−0.023 (3)0.033 (3)−0.0063 (19)
C210.094 (4)0.047 (2)0.059 (3)−0.007 (2)0.053 (3)−0.009 (2)
C220.068 (3)0.047 (2)0.052 (2)−0.001 (2)0.036 (2)−0.0015 (19)
C230.052 (2)0.0323 (19)0.0311 (18)−0.0075 (17)0.0105 (17)−0.0003 (15)
C240.041 (2)0.0306 (18)0.0382 (19)−0.0027 (15)0.0070 (16)0.0032 (15)
C250.075 (3)0.037 (2)0.042 (2)−0.004 (2)0.006 (2)0.0013 (18)
O10.0549 (17)0.0500 (17)0.0495 (16)−0.0009 (15)0.0064 (13)0.0002 (13)
O20.061 (2)0.076 (2)0.0609 (19)0.0112 (18)0.0103 (16)0.0038 (17)
C260.074 (3)0.047 (2)0.058 (3)−0.002 (2)0.015 (2)−0.002 (2)
O30.065 (2)0.074 (2)0.103 (3)0.0053 (19)0.031 (2)−0.007 (2)
O40.116 (3)0.060 (2)0.061 (2)0.001 (2)0.027 (2)−0.0082 (16)
O50.089 (3)0.075 (2)0.090 (3)0.017 (2)0.036 (2)0.018 (2)
O60.078 (2)0.086 (3)0.064 (2)0.004 (2)0.0206 (18)−0.0112 (19)
O70.080 (2)0.076 (2)0.0580 (19)0.0064 (19)0.0182 (17)−0.0100 (17)
O80.075 (2)0.075 (2)0.072 (2)−0.0008 (18)0.0341 (19)0.0044 (18)
O90.085 (3)0.108 (3)0.067 (2)0.016 (2)0.0197 (19)−0.012 (2)
O100.094 (3)0.075 (2)0.076 (2)0.009 (2)0.023 (2)0.0016 (19)
Cu—N21.978 (3)C14—H14A0.9300
Cu—N41.986 (3)C15—C161.400 (7)
Cu—O12.020 (3)C15—H15A0.9300
Cu—N12.059 (3)C16—C241.407 (5)
Cu—N32.177 (3)C16—C171.430 (7)
N1—C11.332 (5)C17—C181.333 (7)
N1—C121.356 (5)C17—H17A0.9300
N2—C101.327 (5)C18—C191.430 (7)
N2—C111.352 (5)C18—H18A0.9300
C1—C21.397 (6)C19—C201.398 (7)
C1—H1A0.9300C19—C231.403 (5)
C2—C31.355 (6)C20—C211.343 (7)
C2—H2A0.9300C20—H20A0.9300
C3—C41.402 (6)C21—C221.388 (6)
C3—H3A0.9300C21—H21A0.9300
C4—C121.399 (5)C22—H22A0.9300
C4—C51.432 (6)C23—C241.437 (5)
C5—C61.345 (6)C25—O21.220 (5)
C5—H5C0.9300C25—O11.245 (5)
C6—C71.415 (6)C25—H250.9300
C6—H6C0.9300C26—O31.228 (6)
C7—C111.396 (5)C26—O41.237 (6)
C7—C81.409 (6)C26—H260.9300
C8—C91.360 (7)O5—H5A0.8162
C8—H8C0.9300O5—H5B0.7309
C9—C101.386 (6)O6—H6A0.7368
C9—H9C0.9300O6—H6B0.8486
C10—H10C0.9300O7—H7A0.8961
C11—C121.421 (5)O7—H7B0.7303
N3—C131.311 (5)O8—H8A0.8225
N3—C241.352 (5)O8—H8B0.7656
N4—C221.316 (5)O9—H9A0.7471
N4—C231.353 (5)O9—H9B0.8279
C13—C141.397 (6)O10—H10A0.8544
C13—H13A0.9300O10—H10B0.8217
C14—C151.351 (7)
N2—Cu—N4176.56 (12)C24—N3—Cu108.7 (2)
N2—Cu—O191.46 (12)C22—N4—C23118.4 (3)
N4—Cu—O190.09 (12)C22—N4—Cu126.6 (3)
N2—Cu—N181.60 (12)C23—N4—Cu114.6 (2)
N4—Cu—N198.78 (12)N3—C13—C14122.7 (4)
O1—Cu—N1146.07 (12)N3—C13—H13A118.7
N2—Cu—N396.24 (12)C14—C13—H13A118.7
N4—Cu—N380.52 (12)C15—C14—C13119.4 (4)
O1—Cu—N396.83 (12)C15—C14—H14A120.3
N1—Cu—N3116.87 (12)C13—C14—H14A120.3
C1—N1—C12118.0 (3)C14—C15—C16120.1 (4)
C1—N1—Cu131.1 (3)C14—C15—H15A120.0
C12—N1—Cu110.8 (2)C16—C15—H15A120.0
C10—N2—C11118.6 (3)C15—C16—C24116.6 (4)
C10—N2—Cu127.2 (3)C15—C16—C17125.0 (4)
C11—N2—Cu114.1 (2)C24—C16—C17118.4 (4)
N1—C1—C2121.9 (4)C18—C17—C16122.1 (4)
N1—C1—H1A119.0C18—C17—H17A118.9
C2—C1—H1A119.0C16—C17—H17A118.9
C3—C2—C1120.0 (4)C17—C18—C19121.0 (4)
C3—C2—H2A120.0C17—C18—H18A119.5
C1—C2—H2A120.0C19—C18—H18A119.5
C2—C3—C4119.8 (4)C20—C19—C23117.3 (4)
C2—C3—H3A120.1C20—C19—C18123.7 (4)
C4—C3—H3A120.1C23—C19—C18119.0 (4)
C12—C4—C3116.8 (4)C21—C20—C19119.7 (4)
C12—C4—C5118.7 (4)C21—C20—H20A120.2
C3—C4—C5124.6 (4)C19—C20—H20A120.2
C6—C5—C4121.3 (4)C20—C21—C22119.9 (4)
C6—C5—H5C119.3C20—C21—H21A120.1
C4—C5—H5C119.3C22—C21—H21A120.1
C5—C6—C7121.0 (4)N4—C22—C21122.6 (5)
C5—C6—H6C119.5N4—C22—H22A118.7
C7—C6—H6C119.5C21—C22—H22A118.7
C11—C7—C8116.5 (4)N4—C23—C19122.2 (4)
C11—C7—C6119.0 (4)N4—C23—C24118.0 (3)
C8—C7—C6124.6 (4)C19—C23—C24119.8 (4)
C9—C8—C7119.8 (4)N3—C24—C16122.9 (4)
C9—C8—H8C120.1N3—C24—C23117.4 (3)
C7—C8—H8C120.1C16—C24—C23119.7 (4)
C8—C9—C10120.0 (4)O2—C25—O1125.9 (4)
C8—C9—H9C120.0O2—C25—H25117.0
C10—C9—H9C120.0O1—C25—H25117.0
N2—C10—C9121.9 (4)C25—O1—Cu108.6 (3)
N2—C10—H10C119.1O3—C26—O4129.0 (5)
C9—C10—H10C119.1O3—C26—H26115.5
N2—C11—C7123.3 (4)O4—C26—H26115.5
N2—C11—C12116.2 (3)H5A—O5—H5B113.5
C7—C11—C12120.5 (4)H6A—O6—H6B102.5
N1—C12—C4123.4 (3)H7A—O7—H7B93.7
N1—C12—C11117.2 (3)H8A—O8—H8B103.3
C4—C12—C11119.5 (3)H9A—O9—H9B94.2
C13—N3—C24118.3 (3)H10A—O10—H10B107.7
C13—N3—Cu132.4 (3)
D—H···AD—HH···AD···AD—H···A
O5—H5A···O80.822.102.874 (5)160
O5—H5B···O4i0.732.102.808 (6)164
O6—H6A···O30.742.162.870 (5)163
O6—H6B···O100.852.032.810 (5)153
O7—H7A···O40.901.952.799 (5)158
O7—H7B···O6ii0.732.082.794 (6)165
O8—H8A···O30.822.122.879 (5)154
O8—H8B···O7i0.762.202.876 (6)148
O9—H9A···O2iii0.752.052.754 (5)157
O9—H9B···O10iv0.832.092.827 (6)148
O10—H10A···O50.852.032.798 (6)149
O10—H10B···O90.822.012.832 (6)179
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H5A⋯O80.822.102.874 (5)160
O5—H5B⋯O4i0.732.102.808 (6)164
O6—H6A⋯O30.742.162.870 (5)163
O6—H6B⋯O100.852.032.810 (5)153
O7—H7A⋯O40.901.952.799 (5)158
O7—H7B⋯O6ii0.732.082.794 (6)165
O8—H8A⋯O30.822.122.879 (5)154
O8—H8B⋯O7i0.762.202.876 (6)148
O9—H9A⋯O2iii0.752.052.754 (5)157
O9—H9B⋯O10iv0.832.092.827 (6)148
O10—H10A⋯O50.852.032.798 (6)149
O10—H10B⋯O90.822.012.832 (6)179

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Formate--the analogue of azide: structural and magnetic properties of M(HCOO)2(4,4'-bpy).nH2O (M = Mn, Co, Ni; n = 0, 5).

Authors:  Xin-Yi Wang; Hai-Yan Wei; Zhe-Ming Wang; Zhi-Da Chen; Song Gao
Journal:  Inorg Chem       Date:  2005-02-07       Impact factor: 5.165

3.  Microporous manganese formate: a simple metal-organic porous material with high framework stability and highly selective gas sorption properties.

Authors:  Danil N Dybtsev; Hyungphil Chun; Sun Hong Yoon; Dongwoo Kim; Kimoon Kim
Journal:  J Am Chem Soc       Date:  2004-01-14       Impact factor: 15.419

  3 in total
  1 in total

1.  (Acetato-κO)bis-(1,10-phenanthroline-κN,N')copper(II) acetate hepta-hydrate.

Authors:  Buqin Jing; Lianzhi Li; Jianfang Dong; Tao Xu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-19
  1 in total

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