Literature DB >> 21581091

N,N'-Dibenzyl-2,2'-[(1,3,4-oxadiazole-2,5-di-yl)bis-(o-phenyl-eneoxy)]diacet-amide.

Wei Wang1, Yong Huang, Ning Tang.   

Abstract

The compound, C(32)H(28)N(4)O(5), which was synthesized by the reaction of 2,5-bis-(2-hydroxy-lphen-yl)-1,3,4-oxadiazole with N-benzyl-2-chloro-acetamide, lies on a twofold rotation axis which passes through the mid-point of the N-N bond and the O atom of the oxadiazole unit. The phenyl-ene and oxadiazole rings are almost coplanar [dihedral angle 1.67 (5)°]. The structure is stabilized by intra-molecular N-H⋯O and N-H⋯N hydrogen bonds.

Entities:  

Year:  2008        PMID: 21581091      PMCID: PMC2959583          DOI: 10.1107/S1600536808033904

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological and physical properties of 1,3,4-oxadiazole derivatives, see Gómez-Saiz et al. (2002 ▶); Wen et al. (2003 ▶); Kuo et al. (2006 ▶). For literature on metal complexes, see Dong et al. (2003 ▶); Zhou et al. (1996 ▶).

Experimental

Crystal data

C32H28N4O5 M = 548.58 Monoclinic, a = 17.0619 (15) Å b = 15.2601 (15) Å c = 10.6555 (9) Å β = 90.611 (5)° V = 2774.2 (4) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 (2) K 0.53 × 0.40 × 0.30 mm

Data collection

Bruker APEXII diffractometer Absorption correction: none 7913 measured reflections 2880 independent reflections 2335 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.158 S = 1.17 2880 reflections 187 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.13 e Å−3 Data collection: APEX2 (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808033904/ng2497sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808033904/ng2497Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C32H28N4O5F(000) = 1152
Mr = 548.58Dx = 1.313 Mg m3
Monoclinic, C2/cMelting point: 462 K
Hall symbol: -C2ycMo Kα radiation, λ = 0.71073 Å
a = 17.0619 (15) ÅCell parameters from 3319 reflections
b = 15.2601 (15) Åθ = 2.4–27.5°
c = 10.6555 (9) ŵ = 0.09 mm1
β = 90.611 (5)°T = 293 K
V = 2774.2 (4) Å3Block, colourless
Z = 40.53 × 0.40 × 0.30 mm
Bruker APEXII diffractometer2335 reflections with I > 2σ(I)
Radiation source: sealed tubeRint = 0.022
graphiteθmax = 26.5°, θmin = 1.8°
φ and ω scansh = −21→20
7913 measured reflectionsk = −12→19
2880 independent reflectionsl = −13→12
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H-atom parameters constrained
wR(F2) = 0.158w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3
S = 1.17(Δ/σ)max = 0.001
2880 reflectionsΔρmax = 0.18 e Å3
187 parametersΔρmin = −0.13 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0054 (10)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.50001.06829 (8)0.75000.0488 (3)
O20.37163 (7)0.91715 (7)0.50427 (11)0.0724 (4)
O30.32801 (7)0.70855 (8)0.38437 (12)0.0822 (4)
N10.47305 (7)0.93150 (7)0.69949 (10)0.0494 (3)
N20.41511 (7)0.75799 (8)0.52944 (11)0.0586 (3)
H2A0.43170.80250.57140.070*
C10.45891 (7)1.01308 (8)0.67330 (11)0.0443 (3)
C20.40733 (7)1.05489 (9)0.58052 (11)0.0466 (3)
C30.40137 (9)1.14557 (10)0.57514 (13)0.0580 (4)
H3A0.43071.17960.63080.070*
C40.35278 (9)1.18603 (10)0.48861 (15)0.0677 (4)
H4A0.34931.24680.48650.081*
C50.30953 (9)1.13641 (11)0.40562 (15)0.0650 (4)
H5A0.27721.16390.34690.078*
C60.31367 (8)1.04601 (10)0.40866 (14)0.0582 (4)
H6A0.28391.01270.35280.070*
C70.36253 (7)1.00528 (9)0.49553 (11)0.0496 (3)
C80.32734 (8)0.86010 (9)0.42649 (13)0.0560 (4)
H8A0.33280.87700.33920.067*
H8B0.27230.86330.44800.067*
C90.35711 (8)0.76851 (9)0.44569 (13)0.0558 (4)
C100.45065 (9)0.67305 (10)0.55103 (16)0.0654 (4)
H10A0.50400.68200.58090.078*
H10B0.45340.64240.47140.078*
C110.40855 (7)0.61462 (8)0.64410 (12)0.0508 (3)
C120.41917 (10)0.52501 (10)0.63923 (16)0.0682 (4)
H12A0.45000.50130.57620.082*
C130.38524 (10)0.46989 (11)0.72545 (16)0.0738 (5)
H13A0.39370.40980.72090.089*
C140.33913 (10)0.50362 (12)0.81753 (14)0.0709 (5)
H14A0.31680.46680.87680.085*
C150.32603 (11)0.59234 (12)0.82183 (15)0.0785 (5)
H15A0.29370.61560.88320.094*
C160.36072 (10)0.64747 (10)0.73521 (14)0.0666 (4)
H16A0.35140.70750.73900.080*
U11U22U33U12U13U23
O10.0557 (7)0.0377 (7)0.0528 (7)0.000−0.0038 (6)0.000
O20.0861 (8)0.0440 (6)0.0862 (8)0.0010 (5)−0.0371 (6)−0.0052 (5)
O30.0976 (9)0.0571 (8)0.0913 (8)−0.0035 (6)−0.0217 (7)−0.0175 (6)
N10.0536 (6)0.0409 (6)0.0537 (6)−0.0004 (5)−0.0055 (5)−0.0002 (4)
N20.0599 (7)0.0475 (7)0.0682 (8)−0.0027 (5)−0.0049 (6)0.0025 (5)
C10.0460 (6)0.0409 (7)0.0461 (7)−0.0030 (5)0.0036 (5)−0.0002 (5)
C20.0466 (7)0.0435 (7)0.0496 (7)−0.0019 (5)0.0049 (5)0.0055 (5)
C30.0656 (8)0.0450 (8)0.0632 (9)−0.0054 (6)−0.0017 (7)0.0075 (6)
C40.0776 (10)0.0459 (8)0.0794 (11)0.0010 (7)−0.0042 (8)0.0185 (7)
C50.0630 (9)0.0619 (10)0.0699 (9)0.0028 (7)−0.0057 (7)0.0227 (7)
C60.0556 (8)0.0609 (9)0.0581 (8)−0.0002 (6)−0.0055 (6)0.0075 (6)
C70.0506 (7)0.0446 (7)0.0536 (7)−0.0002 (6)0.0006 (6)0.0047 (5)
C80.0567 (7)0.0526 (9)0.0584 (8)−0.0057 (6)−0.0091 (6)−0.0043 (6)
C90.0578 (8)0.0503 (8)0.0593 (8)−0.0043 (6)0.0004 (6)−0.0044 (6)
C100.0572 (8)0.0597 (10)0.0794 (10)0.0068 (7)0.0053 (7)0.0083 (7)
C110.0485 (7)0.0522 (8)0.0516 (7)0.0032 (6)−0.0073 (5)−0.0003 (5)
C120.0724 (10)0.0589 (9)0.0734 (10)0.0188 (7)0.0086 (8)0.0065 (7)
C130.0816 (11)0.0548 (9)0.0850 (12)0.0083 (8)−0.0040 (9)0.0156 (8)
C140.0796 (10)0.0749 (11)0.0581 (9)−0.0146 (9)−0.0069 (8)0.0125 (7)
C150.0893 (12)0.0861 (13)0.0603 (10)−0.0136 (10)0.0152 (9)−0.0130 (8)
C160.0819 (10)0.0534 (8)0.0644 (9)−0.0039 (7)0.0056 (7)−0.0143 (7)
O1—C11.3627 (14)C6—C71.3863 (18)
O1—C1i1.3627 (14)C6—H6A0.9300
O2—C71.3570 (16)C8—C91.500 (2)
O2—C81.4151 (16)C8—H8A0.9700
O3—C91.2262 (17)C8—H8B0.9700
N1—C11.2979 (16)C10—C111.5197 (19)
N1—N1i1.408 (2)C10—H10A0.9700
N2—C91.3352 (19)C10—H10B0.9700
N2—C101.4484 (19)C11—C161.3699 (19)
N2—H2A0.8600C11—C121.3805 (19)
C1—C21.4630 (16)C12—C131.378 (2)
C2—C31.389 (2)C12—H12A0.9300
C2—C71.4009 (17)C13—C141.365 (2)
C3—C41.379 (2)C13—H13A0.9300
C3—H3A0.9300C14—C151.373 (2)
C4—C51.373 (2)C14—H14A0.9300
C4—H4A0.9300C15—C161.386 (2)
C5—C61.382 (2)C15—H15A0.9300
C5—H5A0.9300C16—H16A0.9300
C1—O1—C1i103.62 (13)O2—C8—H8B110.0
C7—O2—C8120.64 (11)C9—C8—H8B110.0
C1—N1—N1i106.43 (7)H8A—C8—H8B108.4
C9—N2—C10121.32 (13)O3—C9—N2124.01 (14)
C9—N2—H2A119.3O3—C9—C8119.20 (14)
C10—N2—H2A119.3N2—C9—C8116.78 (12)
N1—C1—O1111.76 (11)N2—C10—C11115.39 (11)
N1—C1—C2132.28 (12)N2—C10—H10A108.4
O1—C1—C2115.95 (11)C11—C10—H10A108.4
C3—C2—C7118.20 (12)N2—C10—H10B108.4
C3—C2—C1120.38 (12)C11—C10—H10B108.4
C7—C2—C1121.42 (12)H10A—C10—H10B107.5
C4—C3—C2121.12 (14)C16—C11—C12117.94 (13)
C4—C3—H3A119.4C16—C11—C10122.48 (13)
C2—C3—H3A119.4C12—C11—C10119.57 (12)
C5—C4—C3119.91 (15)C13—C12—C11121.56 (14)
C5—C4—H4A120.0C13—C12—H12A119.2
C3—C4—H4A120.0C11—C12—H12A119.2
C4—C5—C6120.56 (14)C14—C13—C12119.91 (16)
C4—C5—H5A119.7C14—C13—H13A120.0
C6—C5—H5A119.7C12—C13—H13A120.0
C5—C6—C7119.57 (14)C13—C14—C15119.41 (14)
C5—C6—H6A120.2C13—C14—H14A120.3
C7—C6—H6A120.2C15—C14—H14A120.3
O2—C7—C6123.90 (12)C14—C15—C16120.36 (15)
O2—C7—C2115.47 (11)C14—C15—H15A119.8
C6—C7—C2120.63 (13)C16—C15—H15A119.8
O2—C8—C9108.39 (12)C11—C16—C15120.77 (15)
O2—C8—H8A110.0C11—C16—H16A119.6
C9—C8—H8A110.0C15—C16—H16A119.6
D—H···AD—HH···AD···AD—H···A
N2—H2A···O20.862.152.5523 (16)109
N2—H2A···N10.862.493.3524 (17)177
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O20.862.152.5523 (16)109
N2—H2A⋯N10.862.493.3524 (17)177
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Evidence of desulfurization in the oxidative cyclization of thiosemicarbazones. Conversion to 1,3,4-oxadiazole derivatives.

Authors:  Patricia Gómez-Saiz; Javier García-Tojal; Miguel A Maestro; Francisco J Arnaiz; Teófilo Rojo
Journal:  Inorg Chem       Date:  2002-03-25       Impact factor: 5.165

3.  Self-assembly of coordination polymers from AgX (X = SbF(6)(-), PF(6)(-), and CF(3)SO(3)(-)) and oxadiazole-containing ligands.

Authors:  Yu-Bin Dong; Jun-Yan Cheng; Ru-Qi Huang; Mark D Smith; Hans-Conrad Zur Loye
Journal:  Inorg Chem       Date:  2003-09-08       Impact factor: 5.165

  3 in total

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