Literature DB >> 21581081

Bostrycin.

Shao-Yuan Chen, Chao Huang, Chu-Long Zhang, Yu-Zhe Chen, Fu-Cheng Lin.   

Abstract

The title compound, C(16)H(16)O(8), is a potent nonspecific phyto-toxin. The crystal structure is the average of two tauto-mers, 5,6,7,9,10-penta-hydr-oxy-2-meth-oxy-7-methyl-1,4,5,6,7,8-hexa-hydro-anthracene-1,4-dione and 1,4,5,6,7-pentahydr-oxy-2-meth--oxy-7-methyl-5,6,7,8,9,10-hexa-hydro-anthracene-9,10-di-one. The cyclo-hexene rings in both tautomers display a half-chair conformation. An extensive O-H⋯O hydrogen-bonding network is present in the crystal structure.

Entities:  

Year:  2008        PMID: 21581081      PMCID: PMC2959567          DOI: 10.1107/S1600536808032030

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Charudattan & Rao (1982 ▶); van Eijk (1975 ▶). For a related structure, see: Kelly & Saha (1985 ▶).

Experimental

Crystal data

C16H16O8 M = 336.29 Monoclinic, a = 8.280 (2) Å b = 6.644 (2) Å c = 13.1535 (12) Å β = 102.12 (2)° V = 707.5 (3) Å3 Z = 2 Mo Kα radiation μ = 0.13 mm−1 T = 293 (2) K 0.30 × 0.20 × 0.08 mm

Data collection

Rigaku R-AXIS RAPID IP diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.953, T max = 0.990 6151 measured reflections 1517 independent reflections 1282 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.105 S = 1.08 1517 reflections 220 parameters 1 restraint H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.19 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808032030/xu2453sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808032030/xu2453Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H16O8F(000) = 352
Mr = 336.29Dx = 1.579 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71069 Å
Hall symbol: P 2ybCell parameters from 5814 reflections
a = 8.280 (2) Åθ = 6.1–54.9°
b = 6.644 (2) ŵ = 0.13 mm1
c = 13.1535 (12) ÅT = 293 K
β = 102.12 (2)°Chunk, red
V = 707.5 (3) Å30.30 × 0.20 × 0.08 mm
Z = 2
Rigaku R-AXIS RAPID IP diffractometer1517 independent reflections
Radiation source: fine-focus sealed tube1282 reflections with I > 2σ(I)
graphiteRint = 0.025
Detector resolution: 10 pixels mm-1θmax = 26.0°, θmin = 3.2°
ω scansh = −10→10
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −8→8
Tmin = 0.953, Tmax = 0.990l = −16→16
6151 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035H-atom parameters constrained
wR(F2) = 0.105w = 1/[σ2(Fo2) + (0.0667P)2 + 0.0817P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max = 0.001
1517 reflectionsΔρmax = 0.24 e Å3
220 parametersΔρmin = −0.19 e Å3
1 restraintExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.009 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.4354 (2)0.3424 (4)0.34450 (13)0.0399 (5)
H1A0.51530.33410.39680.060*0.50
O20.1814 (2)0.3555 (4)0.19361 (12)0.0414 (5)
O3−0.1725 (2)0.3863 (4)0.43528 (13)0.0384 (5)
H3A−0.16590.38440.49950.058*0.50
O4−0.0420 (2)0.3933 (4)0.63061 (13)0.0370 (5)
H4A−0.12260.40120.57250.055*0.50
O50.1000 (3)0.2810 (5)0.82507 (17)0.0571 (7)
H5A0.02330.29630.76440.086*
O60.3619 (2)0.4004 (4)0.97960 (12)0.0417 (5)
H6A0.43640.32051.03030.063*
O70.5068 (2)0.6526 (3)0.84879 (13)0.0336 (5)
H7A0.55110.71050.79900.050*
O80.5671 (2)0.3429 (4)0.54013 (13)0.0401 (6)
H8A0.55590.36360.46660.060*0.50
C10.2943 (3)0.3552 (4)0.37142 (18)0.0302 (6)
C20.1464 (3)0.3632 (4)0.28875 (18)0.0303 (6)
C3−0.0063 (3)0.3742 (5)0.31216 (18)0.0314 (6)
H3−0.09960.37810.25870.038*
C4−0.0247 (3)0.3798 (4)0.41735 (18)0.0284 (5)
C50.1177 (3)0.3742 (4)0.50050 (17)0.0263 (5)
C60.1023 (3)0.3820 (4)0.60602 (17)0.0268 (5)
C70.2492 (3)0.3761 (5)0.68900 (17)0.0291 (6)
C80.2301 (3)0.3980 (5)0.80142 (17)0.0311 (6)
H80.20630.53960.81300.037*
C90.3863 (3)0.3403 (4)0.87974 (18)0.0323 (6)
H90.39960.19380.87900.039*
C100.5382 (3)0.4387 (4)0.85300 (17)0.0309 (6)
C110.5585 (3)0.3595 (5)0.74721 (17)0.0319 (6)
H11A0.64250.43830.72400.038*
H11B0.59700.22130.75520.038*
C120.4022 (3)0.3671 (4)0.66537 (17)0.0294 (6)
C130.4195 (3)0.3563 (4)0.55826 (18)0.0296 (6)
C140.2770 (3)0.3626 (4)0.47627 (17)0.0262 (5)
C150.0456 (3)0.3549 (6)0.10420 (18)0.0435 (8)
H15A−0.02200.23840.10680.065*
H15B0.08810.35170.04170.065*
H15C−0.01960.47430.10480.065*
C160.6936 (3)0.3933 (6)0.93488 (19)0.0408 (7)
H16A0.78850.44340.91170.061*
H16B0.70390.25050.94530.061*
H16C0.68610.45750.99910.061*
U11U22U33U12U13U23
O10.0294 (10)0.0644 (15)0.0268 (8)0.0039 (10)0.0076 (7)−0.0058 (10)
O20.0318 (10)0.0719 (15)0.0203 (7)0.0052 (11)0.0050 (7)−0.0025 (10)
O30.0233 (9)0.0584 (13)0.0343 (9)0.0031 (10)0.0082 (7)0.0005 (10)
O40.0279 (10)0.0541 (12)0.0311 (8)−0.0002 (10)0.0112 (7)−0.0016 (10)
O50.0513 (14)0.0811 (19)0.0421 (11)−0.0192 (13)0.0170 (10)0.0069 (12)
O60.0528 (12)0.0518 (12)0.0226 (8)0.0093 (11)0.0126 (8)0.0056 (10)
O70.0444 (11)0.0318 (10)0.0262 (8)−0.0028 (9)0.0112 (7)0.0001 (8)
O80.0223 (9)0.0710 (16)0.0279 (8)0.0015 (10)0.0073 (7)−0.0065 (11)
C10.0294 (13)0.0370 (15)0.0262 (11)0.0026 (13)0.0101 (9)−0.0003 (12)
C20.0326 (14)0.0360 (15)0.0233 (11)0.0014 (14)0.0079 (9)−0.0003 (12)
C30.0298 (13)0.0360 (14)0.0274 (11)0.0032 (13)0.0035 (9)0.0003 (12)
C40.0249 (13)0.0297 (13)0.0307 (11)0.0012 (12)0.0064 (9)0.0003 (12)
C50.0274 (13)0.0282 (12)0.0249 (11)0.0006 (12)0.0089 (9)0.0005 (12)
C60.0267 (12)0.0279 (12)0.0278 (11)−0.0006 (12)0.0103 (9)−0.0021 (12)
C70.0317 (13)0.0334 (13)0.0245 (11)−0.0020 (13)0.0108 (9)−0.0003 (12)
C80.0335 (14)0.0369 (14)0.0261 (11)−0.0011 (12)0.0137 (10)0.0017 (12)
C90.0411 (15)0.0348 (14)0.0232 (10)0.0016 (13)0.0117 (10)0.0021 (11)
C100.0363 (15)0.0338 (15)0.0224 (12)0.0012 (12)0.0055 (10)0.0004 (11)
C110.0283 (13)0.0429 (16)0.0251 (11)0.0016 (13)0.0067 (9)−0.0028 (12)
C120.0304 (13)0.0340 (14)0.0248 (11)0.0024 (13)0.0079 (9)−0.0028 (12)
C130.0270 (13)0.0370 (15)0.0262 (11)0.0028 (12)0.0087 (9)−0.0019 (11)
C140.0250 (12)0.0309 (13)0.0230 (10)0.0014 (12)0.0059 (9)−0.0019 (12)
C150.0381 (15)0.068 (2)0.0225 (11)0.0052 (17)0.0028 (10)−0.0018 (15)
C160.0368 (15)0.0555 (17)0.0279 (12)0.0023 (15)0.0019 (10)−0.0011 (14)
O1—C11.293 (3)C5—C61.421 (3)
O1—H1A0.8501C5—C141.423 (3)
O2—C21.344 (3)C6—C71.454 (3)
O2—C151.447 (3)C7—C121.368 (4)
O3—C41.294 (3)C7—C81.527 (3)
O3—H3A0.8350C8—C91.524 (4)
O4—C61.304 (3)C8—H80.9800
O4—H4A0.9046C9—C101.523 (4)
O5—C81.415 (4)C9—H90.9800
O5—H5A0.9154C10—C161.525 (3)
O6—C91.427 (3)C10—C111.530 (3)
O6—H6A0.9667C11—C121.501 (3)
O7—C101.444 (3)C11—H11A0.9700
O7—H7A0.9012C11—H11B0.9700
O8—C131.296 (3)C12—C131.448 (3)
O8—H8A0.9624C13—C141.422 (3)
C1—C141.417 (3)C15—H15A0.9600
C1—C21.458 (3)C15—H15B0.9600
C2—C31.364 (4)C15—H15C0.9600
C3—C41.424 (3)C16—H16A0.9600
C3—H30.9300C16—H16B0.9600
C4—C51.431 (3)C16—H16C0.9600
C1—O1—H1A112.1C10—C9—C8111.2 (2)
C2—O2—C15118.3 (2)O6—C9—H9108.9
C4—O3—H3A108.7C10—C9—H9108.9
C6—O4—H4A110.2C8—C9—H9108.9
C8—O5—H5A99.7O7—C10—C9106.3 (2)
C9—O6—H6A106.8O7—C10—C16109.9 (2)
C10—O7—H7A110.5C9—C10—C16111.6 (2)
C13—O8—H8A106.3O7—C10—C11110.9 (2)
O1—C1—C14123.4 (2)C9—C10—C11108.4 (2)
O1—C1—C2117.6 (2)C16—C10—C11109.7 (2)
C14—C1—C2119.0 (2)C12—C11—C10113.5 (2)
O2—C2—C3127.1 (2)C12—C11—H11A108.9
O2—C2—C1112.4 (2)C10—C11—H11A108.9
C3—C2—C1120.4 (2)C12—C11—H11B108.9
C2—C3—C4120.9 (2)C10—C11—H11B108.9
C2—C3—H3119.5H11A—C11—H11B107.7
C4—C3—H3119.5C7—C12—C13120.6 (2)
O3—C4—C3118.4 (2)C7—C12—C11122.6 (2)
O3—C4—C5121.4 (2)C13—C12—C11116.7 (2)
C3—C4—C5120.2 (2)O8—C13—C14121.8 (2)
C6—C5—C14119.9 (2)O8—C13—C12118.2 (2)
C6—C5—C4121.1 (2)C14—C13—C12120.1 (2)
C14—C5—C4119.0 (2)C1—C14—C13120.0 (2)
O4—C6—C5121.3 (2)C1—C14—C5120.5 (2)
O4—C6—C7118.7 (2)C13—C14—C5119.5 (2)
C5—C6—C7120.0 (2)O2—C15—H15A109.5
C12—C7—C6119.9 (2)O2—C15—H15B109.5
C12—C7—C8120.9 (2)H15A—C15—H15B109.5
C6—C7—C8119.0 (2)O2—C15—H15C109.5
O5—C8—C9106.9 (2)H15A—C15—H15C109.5
O5—C8—C7113.5 (2)H15B—C15—H15C109.5
C9—C8—C7112.6 (2)C10—C16—H16A109.5
O5—C8—H8107.8C10—C16—H16B109.5
C9—C8—H8107.8H16A—C16—H16B109.5
C7—C8—H8107.8C10—C16—H16C109.5
O6—C9—C10112.1 (2)H16A—C16—H16C109.5
O6—C9—C8106.7 (2)H16B—C16—H16C109.5
D—H···AD—HH···AD···AD—H···A
O1—H1A···O3i0.852.553.229 (3)137
O3—H3A···O8ii0.842.402.808 (3)111
O4—H4A···O8ii0.902.543.223 (3)132
O5—H5A···O40.921.852.687 (3)152
O6—H6A···O7iii0.971.922.821 (3)154
O7—H7A···O1iv0.902.112.966 (3)159
O7—H7A···O2iv0.902.403.066 (3)131
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯O3i0.852.553.229 (3)137
O3—H3A⋯O8ii0.842.402.808 (3)111
O4—H4A⋯O8ii0.902.543.223 (3)132
O5—H5A⋯O40.921.852.687 (3)152
O6—H6A⋯O7iii0.971.922.821 (3)154
O7—H7A⋯O1iv0.902.112.966 (3)159
O7—H7A⋯O2iv0.902.403.066 (3)131

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  R Charudattan; K V Rao
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