Literature DB >> 21581074

2-Amino-pyrimidinium hydrogen chloranilate monohydrate.

Ping Su1, Xue-Ying Huang, Xiang-Gao Meng.   

Abstract

In the title compound, C(4)H(6)N(3) (+)·C(6)HCl(2)O(4) (-)·H(2)O, anions, cations and water mol-ecules are linked by inter-molecular O-H⋯O, O-H⋯N and N-H⋯O hydrogen bonds into one-dimensional tapes along [111]. These tapes are further linked by weak Cl⋯Cl inter-actions [Cl⋯Cl = 3.394 (2) Å], forming sheets parallel to the (10) plane.

Entities:  

Year:  2008        PMID: 21581074      PMCID: PMC2959704          DOI: 10.1107/S1600536808034740

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information, see: Aakeröy & Salmon (2005 ▶); Aakeröy et al. (2007 ▶); Abrahams et al. (2002 ▶); Cueto et al. (1992 ▶); Kawata et al. (1994 ▶, 1998 ▶). For related crystal structures, see: Meng & Qian (2006 ▶); Min et al. (2006 ▶, 2007 ▶); Murata et al. (2007 ▶); Wang & Wei (2005 ▶); Yang (2007 ▶); Gaballa et al. (2008 ▶); Gotoh et al. (2006 ▶, 2007a ▶,b ▶,c ▶); Jia et al. (2008 ▶). For bond-length data, see: Allen (2002 ▶); Allen et al. (1987 ▶).

Experimental

Crystal data

C4H6N3C6HCl2O4 −·H2O M = 322.10 Triclinic, a = 6.7969 (5) Å b = 9.4631 (6) Å c = 11.0604 (7) Å α = 106.074 (1)° β = 105.892 (1)° γ = 101.925 (1)° V = 626.01 (7) Å3 Z = 2 Mo Kα radiation μ = 0.54 mm−1 T = 292 (2) K 0.27 × 0.10 × 0.04 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.857, T max = 0.979 5691 measured reflections 2121 independent reflections 1348 reflections with I > 2σ(I) R int = 0.071

Refinement

R[F 2 > 2σ(F 2)] = 0.078 wR(F 2) = 0.197 S = 0.97 2121 reflections 199 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.66 e Å−3 Δρmin = −0.45 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT-Plus (Bruker, 2007 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2003 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808034740/lh2716sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808034740/lh2716Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H6N3+·C6HCl2O4·H2OZ = 2
Mr = 322.10F(000) = 328
Triclinic, P1Dx = 1.709 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.7969 (5) ÅCell parameters from 1004 reflections
b = 9.4631 (6) Åθ = 2.2–25.2°
c = 11.0604 (7) ŵ = 0.54 mm1
α = 106.074 (1)°T = 292 K
β = 105.892 (1)°Plate, red
γ = 101.925 (1)°0.27 × 0.10 × 0.04 mm
V = 626.01 (7) Å3
Bruker SMART APEX CCD area-detector diffractometer2121 independent reflections
Radiation source: fine focus sealed Siemens Mo tube1348 reflections with I > 2σ(I)
graphiteRint = 0.071
0.3° wide ω exposures scansθmax = 25.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −7→8
Tmin = 0.857, Tmax = 0.979k = −11→11
5691 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.078Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.197H atoms treated by a mixture of independent and constrained refinement
S = 0.97w = 1/[σ2(Fo2) + (0.1114P)2] where P = (Fo2 + 2Fc2)/3
2121 reflections(Δ/σ)max < 0.001
199 parametersΔρmax = 0.66 e Å3
6 restraintsΔρmin = −0.45 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.1247 (7)0.1172 (6)0.1769 (5)0.0361 (12)
C2−0.1473 (7)−0.0408 (6)0.2001 (5)0.0425 (13)
C3−0.2335 (8)−0.1755 (5)0.0838 (5)0.0378 (12)
C4−0.3014 (7)−0.1738 (6)−0.0449 (5)0.0358 (12)
C5−0.2867 (7)−0.0171 (6)−0.0623 (5)0.0372 (12)
C6−0.2029 (7)0.1163 (6)0.0438 (5)0.0363 (12)
Cl1−0.1870 (2)0.29304 (15)0.02393 (13)0.0479 (5)
Cl2−0.2558 (2)−0.35198 (15)0.10632 (14)0.0500 (5)
O1−0.0385 (6)0.2339 (4)0.2793 (3)0.0506 (10)
O2−0.0871 (6)−0.0336 (4)0.3183 (3)0.0547 (11)
O3−0.3780 (6)−0.2884 (4)−0.1520 (4)0.0513 (10)
O4−0.3561 (6)−0.0196 (4)−0.1857 (4)0.0509 (10)
H4−0.399 (10)−0.110 (3)−0.238 (5)0.076*
C70.3286 (7)0.6009 (6)0.5065 (5)0.0365 (12)
C80.5278 (8)0.8089 (6)0.4821 (6)0.0462 (14)
H80.63010.90590.52060.055*
C90.4403 (9)0.7485 (6)0.3461 (6)0.0481 (14)
H90.48010.80200.29330.058*
C100.2900 (8)0.6044 (7)0.2895 (5)0.0468 (14)
H100.22440.55730.19670.056*
N10.4796 (6)0.7413 (5)0.5644 (4)0.0447 (11)
N20.2407 (6)0.5338 (5)0.3717 (4)0.0378 (11)
H20.162 (9)0.442 (6)0.329 (5)0.045*
N30.2768 (7)0.5294 (6)0.5858 (5)0.0504 (12)
H3A0.200 (8)0.434 (3)0.548 (5)0.060*
H3B0.337 (9)0.579 (6)0.671 (2)0.060*
O50.0043 (6)0.2393 (4)0.5451 (3)0.0493 (10)
H5A−0.050 (10)0.171 (5)0.468 (2)0.074*
H5B0.021 (10)0.205 (6)0.606 (3)0.074*
U11U22U33U12U13U23
C10.026 (3)0.037 (3)0.041 (3)0.006 (2)0.012 (2)0.009 (3)
C20.024 (3)0.053 (4)0.050 (3)0.008 (2)0.011 (2)0.023 (3)
C30.034 (3)0.034 (3)0.046 (3)0.013 (2)0.015 (2)0.013 (3)
C40.020 (3)0.042 (3)0.040 (3)0.011 (2)0.010 (2)0.006 (3)
C50.027 (3)0.047 (3)0.042 (3)0.016 (2)0.016 (2)0.016 (3)
C60.023 (3)0.045 (3)0.048 (3)0.015 (2)0.015 (2)0.020 (3)
Cl10.0427 (8)0.0484 (9)0.0582 (9)0.0174 (6)0.0181 (7)0.0246 (7)
Cl20.0507 (9)0.0413 (8)0.0540 (9)0.0113 (6)0.0153 (7)0.0161 (7)
O10.058 (2)0.044 (2)0.040 (2)0.0055 (19)0.0164 (19)0.0100 (19)
O20.070 (3)0.049 (2)0.034 (2)0.010 (2)0.0066 (19)0.0145 (18)
O30.052 (2)0.046 (2)0.044 (2)0.0126 (19)0.0096 (19)0.0068 (19)
O40.062 (3)0.046 (2)0.038 (2)0.016 (2)0.0110 (19)0.0117 (17)
C70.024 (3)0.045 (3)0.043 (3)0.018 (2)0.013 (2)0.012 (3)
C80.026 (3)0.047 (3)0.059 (4)0.006 (2)0.015 (3)0.013 (3)
C90.044 (3)0.057 (4)0.053 (4)0.019 (3)0.019 (3)0.029 (3)
C100.040 (3)0.062 (4)0.043 (3)0.021 (3)0.017 (3)0.017 (3)
N10.031 (2)0.048 (3)0.051 (3)0.016 (2)0.010 (2)0.011 (2)
N20.024 (2)0.037 (2)0.044 (3)0.0089 (18)0.0065 (19)0.007 (2)
N30.041 (3)0.052 (3)0.058 (3)0.014 (2)0.017 (3)0.020 (3)
O50.051 (2)0.059 (2)0.040 (2)0.021 (2)0.013 (2)0.0214 (19)
C1—O11.234 (6)C7—N21.347 (6)
C1—C61.419 (7)C7—N11.354 (6)
C1—C21.569 (7)C8—N11.321 (6)
C2—O21.236 (5)C8—C91.355 (7)
C2—C31.412 (7)C8—H80.9300
C3—C41.377 (7)C9—C101.377 (7)
C3—Cl21.738 (5)C9—H90.9300
C4—O31.252 (6)C10—N21.341 (6)
C4—C51.533 (7)C10—H100.9300
C5—O41.308 (6)N2—H20.84 (5)
C5—C61.346 (7)N3—H3A0.86 (2)
C6—Cl11.732 (5)N3—H3B0.86 (2)
O4—H40.83 (2)O5—H5A0.82 (4)
C7—N31.323 (6)O5—H5B0.82 (4)
O1—C1—C6125.3 (5)N3—C7—N1118.2 (5)
O1—C1—C2115.6 (4)N2—C7—N1120.6 (4)
C6—C1—C2119.1 (5)N1—C8—C9125.3 (5)
O2—C2—C3127.1 (5)N1—C8—H8117.3
O2—C2—C1116.4 (5)C9—C8—H8117.3
C3—C2—C1116.5 (4)C8—C9—C10117.1 (5)
C4—C3—C2123.5 (4)C8—C9—H9121.4
C4—C3—Cl2118.9 (4)C10—C9—H9121.4
C2—C3—Cl2117.6 (4)N2—C10—C9118.2 (5)
O3—C4—C3126.8 (5)N2—C10—H10120.9
O3—C4—C5115.2 (4)C9—C10—H10120.9
C3—C4—C5118.1 (5)C8—N1—C7116.5 (5)
O4—C5—C6121.7 (5)C10—N2—C7122.2 (5)
O4—C5—C4116.6 (4)C10—N2—H2112 (3)
C6—C5—C4121.8 (4)C7—N2—H2126 (3)
C5—C6—C1121.0 (5)C7—N3—H3A117 (4)
C5—C6—Cl1121.7 (4)C7—N3—H3B117 (4)
C1—C6—Cl1117.4 (4)H3A—N3—H3B126 (5)
C1—O1—H2135.7 (14)H3A—O5—H5A112 (4)
C2—O2—H5A118.4 (13)H3A—O5—H5B126 (4)
C5—O4—H4109 (4)H5A—O5—H5B114 (3)
N3—C7—N2121.2 (5)
O1—C1—C2—O23.6 (7)O4—C5—C6—Cl11.4 (7)
C6—C1—C2—O2−176.2 (4)C4—C5—C6—Cl1−179.9 (3)
O1—C1—C2—C3−176.3 (4)O1—C1—C6—C5177.2 (5)
C6—C1—C2—C33.9 (7)C2—C1—C6—C5−3.0 (7)
O2—C2—C3—C4178.5 (5)O1—C1—C6—Cl1−3.0 (7)
C1—C2—C3—C4−1.7 (7)C2—C1—C6—Cl1176.8 (3)
O2—C2—C3—Cl2−1.0 (7)C6—C1—O1—H2−38 (2)
C1—C2—C3—Cl2178.8 (3)C2—C1—O1—H2143 (2)
C2—C3—C4—O3179.6 (5)C3—C2—O2—H5A−163 (2)
Cl2—C3—C4—O3−0.9 (7)C1—C2—O2—H5A17 (2)
C2—C3—C4—C5−1.4 (7)N1—C8—C9—C10−0.4 (8)
Cl2—C3—C4—C5178.1 (3)C8—C9—C10—N2−0.1 (8)
O3—C4—C5—O40.4 (6)C9—C8—N1—C7−0.7 (8)
C3—C4—C5—O4−178.8 (4)N3—C7—N1—C8179.8 (5)
O3—C4—C5—C6−178.4 (4)N2—C7—N1—C82.4 (7)
C3—C4—C5—C62.5 (7)C9—C10—N2—C71.9 (8)
O4—C5—C6—C1−178.8 (4)N3—C7—N2—C10179.6 (5)
C4—C5—C6—C1−0.1 (7)N1—C7—N2—C10−3.1 (7)
D—H···AD—HH···AD···AD—H···A
O4—H4···O30.83 (2)2.16 (6)2.651 (5)118 (5)
O4—H4···N1i0.83 (2)2.07 (4)2.795 (6)146 (6)
O5—H5A···O20.82 (4)2.09 (3)2.872 (5)156 (6)
O5—H5A···O10.82 (4)2.34 (4)2.859 (5)121 (4)
O5—H5B···O2ii0.82 (4)2.09 (4)2.830 (5)150 (5)
N3—H3A···O50.86 (2)2.02 (3)2.815 (6)153 (5)
N2—H2···O10.84 (5)1.98 (5)2.793 (6)163 (5)
N3—H3B···O3iii0.86 (2)2.17 (4)2.953 (6)151 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4⋯O30.83 (2)2.16 (6)2.651 (5)118 (5)
O4—H4⋯N1i0.83 (2)2.07 (4)2.795 (6)146 (6)
O5—H5A⋯O20.82 (4)2.09 (3)2.872 (5)156 (6)
O5—H5A⋯O10.82 (4)2.34 (4)2.859 (5)121 (4)
O5—H5B⋯O2ii0.82 (4)2.09 (4)2.830 (5)150 (5)
N3—H3A⋯O50.86 (2)2.02 (3)2.815 (6)153 (5)
N2—H2⋯O10.84 (5)1.98 (5)2.793 (6)163 (5)
N3—H3B⋯O3iii0.86 (2)2.17 (4)2.953 (6)151 (5)

Symmetry codes: (i) ; (ii) ; (iii) .

  7 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  Structural competition between hydrogen bonds and halogen bonds.

Authors:  Christer B Aakeröy; Meg Fasulo; Nate Schultheiss; John Desper; Curtis Moore
Journal:  J Am Chem Soc       Date:  2007-10-23       Impact factor: 15.419

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Characterization of the chloranilate(*3-) pi radical as a strong spin-coupling bridging ligand.

Authors:  Kil Sik Min; Arnold L Rheingold; Antonio Dipasquale; Joel S Miller
Journal:  Inorg Chem       Date:  2006-08-07       Impact factor: 5.165

5.  Synthesis, structure, and magnetic properties of valence ambiguous dinuclear antiferromagnetically coupled cobalt and ferromagnetically coupled iron complexes containing the chloranilate(2-) and the significantly stronger coupling chloranilate(*3-) radical trianion.

Authors:  Kil Sik Min; Antonio G DiPasquale; James A Golen; Arnold L Rheingold; Atta M Arif; Joel S Miller
Journal:  J Am Chem Soc       Date:  2007-02-02       Impact factor: 15.419

6.  Hydrogen-bond interaction in organic conductors: redox activation, molecular recognition, structural regulation, and proton transfer in donor-acceptor charge-transfer complexes of TTF-imidazole.

Authors:  Tsuyoshi Murata; Yasushi Morita; Yumi Yakiyama; Kozo Fukui; Hideki Yamochi; Gunzi Saito; Kazuhiro Nakasuji
Journal:  J Am Chem Soc       Date:  2007-08-14       Impact factor: 15.419

7.  Bis(2-methyl-imidazolium) chloranilate.

Authors:  Li-Hui Jia; Zong-E Mu; Zu-Li Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-06
  7 in total
  1 in total

1.  Hydrogen bonding in the crystal structure of the molecular salt of pyrazole-pyrazolium picrate.

Authors:  Ping Su; Xue-Gang Song; Ren-Qiang Sun; Xing-Man Xu
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-05-27
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.