Literature DB >> 21581069

4-Chloro-2-((1R)-1-{[(R)-(2-chloro-phen-yl)(cyclo-pent-yl)meth-yl]amino}eth-yl)phenol.

Guang-You Zhang, Ting Yang, Bao-Wang Xu, Di-Juan Chen, Wan-Hui Wang.   

Abstract

The title compound, C(20)H(23)Cl(2)NO, was prepared by condensation of (R)-1-(2-chloro-phen-yl)-1-cyclo-pentyl-methanamine with 1-(5-chloro-2-hydroxy-phen-yl)ethanone, resulting in the formation of a new chiral center. The structural analysis confirms the absolute configuration of the title compound and the formation of the (R,R) diastereoisomer. There is an intra-molecular O-H⋯N hydrogen bond which stabilizes the conformation of the mol-ecule. The mol-ecules are linked to each other through weak C-H⋯π inter-actions.

Entities:  

Year:  2008        PMID: 21581069      PMCID: PMC2959664          DOI: 10.1107/S1600536808034624

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Ager et al. (1996 ▶); Berrisford et al. (1995 ▶); Cimarelli & Palmieri (1998 ▶); Cimarelli et al. (2001 ▶, 2002 ▶); Hayase et al. (1997 ▶); Nakano et al. (1997 ▶); Palmieri (1999 ▶, 2000 ▶); Soai & Niwa (1992 ▶); Watanabe et al. (1991 ▶); Xu & Pu (2004 ▶); Yang et al. (2005 ▶).

Experimental

Crystal data

C20H23Cl2NO M = 364.29 Orthorhombic, a = 11.286 (2) Å b = 11.539 (2) Å c = 14.740 (3) Å V = 1919.5 (6) Å3 Z = 4 Mo Kα radiation μ = 0.34 mm−1 T = 298 (2) K 0.42 × 0.29 × 0.18 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1997 ▶) T min = 0.869, T max = 0.941 10145 measured reflections 3573 independent reflections 2761 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.113 S = 1.02 3573 reflections 219 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.22 e Å−3 Absolute structure: Flack (1983 ▶), 1629 Friedel pairs Flack parameter: 0.03 (8) Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶) and ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808034624/dn2393sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808034624/dn2393Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H23Cl2NOF(000) = 768
Mr = 364.29Dx = 1.261 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2608 reflections
a = 11.286 (2) Åθ = 2.2–20.5°
b = 11.539 (2) ŵ = 0.34 mm1
c = 14.740 (3) ÅT = 298 K
V = 1919.5 (6) Å3Block, colourless
Z = 40.42 × 0.29 × 0.18 mm
Bruker SMART CCD area-detector diffractometer3573 independent reflections
Radiation source: fine-focus sealed tube2761 reflections with I > 2σ(I)
graphiteRint = 0.032
φ and ω scansθmax = 25.5°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 1997)h = −13→13
Tmin = 0.869, Tmax = 0.941k = −13→11
10145 measured reflectionsl = −17→15
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048H-atom parameters constrained
wR(F2) = 0.113w = 1/[σ2(Fo2) + (0.0486P)2 + 0.3378P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
3573 reflectionsΔρmax = 0.17 e Å3
219 parametersΔρmin = −0.22 e Å3
0 restraintsAbsolute structure: Flack (1983), 1629 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.03 (8)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.4448 (2)0.9053 (2)0.71545 (19)0.0527 (7)
C20.5587 (2)0.9243 (2)0.68485 (16)0.0450 (6)
C30.5716 (3)1.0086 (2)0.61779 (19)0.0583 (7)
H30.64681.02420.59520.070*
C40.4774 (3)1.0688 (3)0.5843 (2)0.0662 (9)
H40.48911.12450.53950.079*
C50.3652 (3)1.0476 (3)0.6164 (2)0.0702 (9)
H50.30071.08860.59390.084*
C60.3501 (3)0.9649 (3)0.6822 (2)0.0679 (9)
H60.27460.94940.70430.082*
C70.6676 (2)0.8606 (2)0.71942 (18)0.0494 (7)
H70.64120.80680.76670.059*
C80.7239 (3)0.7890 (3)0.6445 (2)0.0597 (8)
H80.74960.84170.59630.072*
C90.8298 (3)0.7153 (3)0.6731 (3)0.0842 (11)
H9A0.90150.76160.67490.101*
H9B0.81680.68140.73240.101*
C100.8389 (4)0.6226 (4)0.6016 (3)0.1137 (16)
H10A0.89220.64670.55360.136*
H10B0.86870.55120.62780.136*
C110.7165 (4)0.6053 (4)0.5653 (3)0.1091 (15)
H11A0.71710.60910.49950.131*
H11B0.68630.53010.58340.131*
C120.6404 (3)0.6996 (3)0.6033 (2)0.0747 (10)
H12A0.58770.66880.64930.090*
H12B0.59300.73450.55570.090*
C130.7159 (3)1.0138 (3)0.83381 (19)0.0558 (7)
H130.64331.05290.81400.067*
C140.8106 (4)1.1051 (3)0.8523 (2)0.0835 (11)
H14A0.88281.06770.87050.125*
H14B0.78421.15570.89990.125*
H14C0.82451.14940.79830.125*
C150.6889 (3)0.9446 (3)0.91861 (19)0.0537 (7)
C160.6008 (3)0.9804 (3)0.9767 (2)0.0606 (8)
H160.55581.04520.96200.073*
C170.5781 (3)0.9215 (4)1.0566 (2)0.0757 (10)
C180.6416 (5)0.8248 (4)1.0777 (3)0.0969 (15)
H180.62540.78441.13080.116*
C190.7279 (4)0.7875 (3)1.0216 (3)0.0909 (14)
H190.77000.72071.03620.109*
C200.7551 (3)0.8472 (3)0.9425 (2)0.0669 (9)
Cl10.41737 (8)0.79949 (9)0.79694 (7)0.0876 (3)
Cl20.47184 (9)0.97355 (14)1.13076 (7)0.1212 (5)
N10.75723 (19)0.9378 (2)0.76056 (16)0.0590 (6)
O10.8465 (2)0.8094 (2)0.89205 (18)0.0974 (9)
H1A0.84710.84370.84330.146*
H10.78530.97840.71460.117*
U11U22U33U12U13U23
C10.0501 (16)0.0547 (17)0.0533 (16)−0.0074 (14)0.0004 (14)0.0055 (13)
C20.0518 (15)0.0445 (14)0.0386 (14)−0.0076 (13)−0.0041 (12)−0.0018 (12)
C30.0571 (17)0.0609 (18)0.0567 (17)−0.0135 (15)−0.0047 (15)0.0086 (15)
C40.088 (2)0.0532 (19)0.0577 (19)−0.0095 (18)−0.0138 (18)0.0100 (15)
C50.074 (2)0.063 (2)0.074 (2)0.0047 (18)−0.0227 (19)0.0004 (19)
C60.0472 (15)0.078 (2)0.079 (2)−0.0036 (16)−0.0035 (15)0.0018 (19)
C70.0468 (15)0.0528 (16)0.0485 (16)−0.0063 (13)−0.0026 (13)0.0001 (13)
C80.0586 (17)0.0647 (19)0.0558 (18)−0.0008 (15)−0.0021 (15)−0.0062 (15)
C90.0568 (19)0.093 (3)0.102 (3)0.013 (2)−0.0081 (18)−0.028 (2)
C100.088 (3)0.124 (3)0.129 (4)0.024 (3)−0.010 (3)−0.059 (3)
C110.098 (3)0.097 (3)0.132 (4)0.014 (3)−0.008 (3)−0.052 (3)
C120.068 (2)0.077 (2)0.079 (2)0.0014 (19)−0.0103 (18)−0.0250 (19)
C130.0533 (16)0.0598 (17)0.0544 (17)−0.0024 (15)−0.0074 (14)−0.0045 (14)
C140.099 (3)0.082 (2)0.069 (2)−0.028 (2)−0.001 (2)−0.0123 (19)
C150.0525 (16)0.0569 (17)0.0516 (16)−0.0085 (15)−0.0162 (14)−0.0034 (14)
C160.0534 (17)0.070 (2)0.0587 (19)−0.0094 (16)−0.0122 (15)0.0018 (16)
C170.070 (2)0.095 (3)0.062 (2)−0.035 (2)−0.0145 (18)0.000 (2)
C180.145 (4)0.086 (3)0.060 (2)−0.051 (3)−0.037 (3)0.013 (2)
C190.143 (4)0.059 (2)0.071 (3)−0.007 (2)−0.057 (3)0.001 (2)
C200.081 (2)0.059 (2)0.060 (2)0.0069 (18)−0.0332 (18)−0.0136 (16)
Cl10.0671 (5)0.1041 (7)0.0916 (6)−0.0106 (5)0.0140 (5)0.0452 (5)
Cl20.0834 (6)0.2043 (14)0.0759 (6)−0.0444 (8)0.0151 (5)−0.0046 (8)
N10.0475 (13)0.0749 (17)0.0547 (14)−0.0100 (13)−0.0024 (11)−0.0098 (13)
O10.1023 (19)0.102 (2)0.0875 (18)0.0454 (17)−0.0382 (15)−0.0257 (16)
C1—C61.363 (4)C11—H11A0.9700
C1—C21.379 (4)C11—H11B0.9700
C1—Cl11.740 (3)C12—H12A0.9700
C2—C31.394 (4)C12—H12B0.9700
C2—C71.520 (4)C13—N11.468 (3)
C3—C41.363 (4)C13—C151.515 (4)
C3—H30.9300C13—C141.525 (4)
C4—C51.373 (5)C13—H130.9800
C4—H40.9300C14—H14A0.9600
C5—C61.371 (5)C14—H14B0.9600
C5—H50.9300C14—H14C0.9600
C6—H60.9300C15—C161.375 (4)
C7—N11.477 (3)C15—C201.394 (4)
C7—C81.518 (4)C16—C171.384 (4)
C7—H70.9800C16—H160.9300
C8—C121.524 (4)C17—C181.363 (6)
C8—C91.526 (4)C17—Cl21.730 (4)
C8—H80.9800C18—C191.348 (6)
C9—C101.504 (5)C18—H180.9300
C9—H9A0.9700C19—C201.389 (5)
C9—H9B0.9700C19—H190.9300
C10—C111.495 (6)C20—O11.344 (4)
C10—H10A0.9700N1—H10.8826
C10—H10B0.9700O1—H1A0.8200
C11—C121.495 (5)
C6—C1—C2122.2 (3)C10—C11—H11A110.2
C6—C1—Cl1117.6 (2)C12—C11—H11B110.2
C2—C1—Cl1120.2 (2)C10—C11—H11B110.2
C1—C2—C3116.1 (3)H11A—C11—H11B108.5
C1—C2—C7124.5 (2)C11—C12—C8106.7 (3)
C3—C2—C7119.4 (2)C11—C12—H12A110.4
C4—C3—C2122.1 (3)C8—C12—H12A110.4
C4—C3—H3118.9C11—C12—H12B110.4
C2—C3—H3118.9C8—C12—H12B110.4
C3—C4—C5120.2 (3)H12A—C12—H12B108.6
C3—C4—H4119.9N1—C13—C15110.8 (2)
C5—C4—H4119.9N1—C13—C14108.8 (2)
C6—C5—C4118.9 (3)C15—C13—C14110.9 (2)
C6—C5—H5120.6N1—C13—H13108.7
C4—C5—H5120.6C15—C13—H13108.7
C1—C6—C5120.5 (3)C14—C13—H13108.7
C1—C6—H6119.7C13—C14—H14A109.5
C5—C6—H6119.7C13—C14—H14B109.5
N1—C7—C8109.9 (2)H14A—C14—H14B109.5
N1—C7—C2113.6 (2)C13—C14—H14C109.5
C8—C7—C2111.0 (2)H14A—C14—H14C109.5
N1—C7—H7107.4H14B—C14—H14C109.5
C8—C7—H7107.4C16—C15—C20118.2 (3)
C2—C7—H7107.4C16—C15—C13120.0 (3)
C7—C8—C12113.6 (2)C20—C15—C13121.7 (3)
C7—C8—C9115.5 (3)C15—C16—C17121.1 (3)
C12—C8—C9102.5 (3)C15—C16—H16119.4
C7—C8—H8108.3C17—C16—H16119.4
C12—C8—H8108.3C18—C17—C16119.9 (4)
C9—C8—H8108.3C18—C17—Cl2120.3 (3)
C10—C9—C8104.9 (3)C16—C17—Cl2119.8 (3)
C10—C9—H9A110.8C19—C18—C17120.2 (4)
C8—C9—H9A110.8C19—C18—H18119.9
C10—C9—H9B110.8C17—C18—H18119.9
C8—C9—H9B110.8C18—C19—C20121.1 (4)
H9A—C9—H9B108.8C18—C19—H19119.5
C11—C10—C9106.4 (3)C20—C19—H19119.5
C11—C10—H10A110.4O1—C20—C19118.2 (3)
C9—C10—H10A110.4O1—C20—C15122.2 (3)
C11—C10—H10B110.4C19—C20—C15119.5 (4)
C9—C10—H10B110.4C13—N1—C7116.4 (2)
H10A—C10—H10B108.6C13—N1—H1111.2
C12—C11—C10107.4 (3)C7—N1—H1104.5
C12—C11—H11A110.2C20—O1—H1A109.5
C6—C1—C2—C30.2 (4)C7—C8—C12—C11−154.8 (3)
Cl1—C1—C2—C3178.3 (2)C9—C8—C12—C11−29.4 (4)
C6—C1—C2—C7179.9 (3)N1—C13—C15—C16−148.4 (2)
Cl1—C1—C2—C7−1.9 (4)C14—C13—C15—C1690.6 (3)
C1—C2—C3—C40.0 (4)N1—C13—C15—C2034.8 (4)
C7—C2—C3—C4−179.8 (3)C14—C13—C15—C20−86.2 (3)
C2—C3—C4—C50.0 (5)C20—C15—C16—C17−0.1 (4)
C3—C4—C5—C6−0.2 (5)C13—C15—C16—C17−177.1 (3)
C2—C1—C6—C5−0.3 (5)C15—C16—C17—C18−1.6 (5)
Cl1—C1—C6—C5−178.5 (2)C15—C16—C17—Cl2176.6 (2)
C4—C5—C6—C10.3 (5)C16—C17—C18—C191.2 (5)
C1—C2—C7—N1−119.6 (3)Cl2—C17—C18—C19−177.0 (3)
C3—C2—C7—N160.2 (3)C17—C18—C19—C201.0 (6)
C1—C2—C7—C8116.1 (3)C18—C19—C20—O1176.3 (3)
C3—C2—C7—C8−64.2 (3)C18—C19—C20—C15−2.7 (5)
N1—C7—C8—C12175.2 (3)C16—C15—C20—O1−176.8 (3)
C2—C7—C8—C12−58.3 (3)C13—C15—C20—O10.1 (4)
N1—C7—C8—C957.2 (3)C16—C15—C20—C192.2 (4)
C2—C7—C8—C9−176.4 (3)C13—C15—C20—C19179.1 (3)
C7—C8—C9—C10158.9 (3)C15—C13—N1—C770.8 (3)
C12—C8—C9—C1034.8 (4)C14—C13—N1—C7−166.9 (3)
C8—C9—C10—C11−27.7 (5)C8—C7—N1—C13179.4 (2)
C9—C10—C11—C129.1 (5)C2—C7—N1—C1354.4 (3)
C10—C11—C12—C813.0 (5)
D—H···AD—HH···AD···AD—H···A
O1—H1A···N10.821.922.639 (3)146
C3—H3···Cg1i0.932.763.661 (3)164
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯N10.821.922.639 (3)146
C3—H3⋯Cg1i0.932.763.661 (3)164

Symmetry code: (i) . Cg is the centroid of the C15–C20 benzene ring

  5 in total

1.  1,2-Amino Alcohols and Their Heterocyclic Derivatives as Chiral Auxiliaries in Asymmetric Synthesis.

Authors:  David J. Ager; Indra Prakash; David R. Schaad
Journal:  Chem Rev       Date:  1996-03-28       Impact factor: 60.622

2.  A new 1,1'-binaphthyl-based catalyst for the enantioselective phenylacetylene addition to aromatic aldehydes without using a titanium complex.

Authors:  Ming-Hua Xu; Lin Pu
Journal:  Org Lett       Date:  2002-12-12       Impact factor: 6.005

3.  Solvent-free asymmetric aminoalkylation of electron-rich aromatic compounds: stereoselective synthesis of aminoalkylnaphthols by crystallization-induced asymmetric transformation.

Authors:  C Cimarelli; A Mazzanti; G Palmieri; E Volpini
Journal:  J Org Chem       Date:  2001-07-13       Impact factor: 4.354

4.  N-[(R)-1-(2-hydroxy-5-methylphenyl)ethyl]-N-[(R)-1-(2-methoxy-5-methylphenyl)-2-phenylethyl]aminium chloride.

Authors:  Xiao-Feng Yang; Guang-You Zhang; Yan Zhang; Jin-Yan Zhao; Xiang-Bo Wang
Journal:  Acta Crystallogr C       Date:  2005-03-25       Impact factor: 1.172

5.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  5 in total

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