| Literature DB >> 21581069 |
Guang-You Zhang, Ting Yang, Bao-Wang Xu, Di-Juan Chen, Wan-Hui Wang.
Abstract
The title compound, C(20)H(23)Cl(2)NO, was prepared by condensation of (R)-1-(2-chloro-phen-yl)-1-cyclo-pentyl-methanamine with 1-(5-chloro-2-hydroxy-phen-yl)ethanone, resulting in the formation of a new chiral center. The structural analysis confirms the absolute configuration of the title compound and the formation of the (R,R) diastereoisomer. There is an intra-molecular O-H⋯N hydrogen bond which stabilizes the conformation of the mol-ecule. The mol-ecules are linked to each other through weak C-H⋯π inter-actions.Entities:
Year: 2008 PMID: 21581069 PMCID: PMC2959664 DOI: 10.1107/S1600536808034624
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H23Cl2NO | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 2608 reflections |
| θ = 2.2–20.5° | |
| µ = 0.34 mm−1 | |
| Block, colourless | |
| 0.42 × 0.29 × 0.18 mm |
| Bruker SMART CCD area-detector diffractometer | 3573 independent reflections |
| Radiation source: fine-focus sealed tube | 2761 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.5°, θmin = 2.2° |
| Absorption correction: multi-scan (SADABS; Bruker, 1997) | |
| 10145 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 3573 reflections | Δρmax = 0.17 e Å−3 |
| 219 parameters | Δρmin = −0.22 e Å−3 |
| 0 restraints | Absolute structure: Flack (1983), 1629 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.03 (8) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.4448 (2) | 0.9053 (2) | 0.71545 (19) | 0.0527 (7) | |
| C2 | 0.5587 (2) | 0.9243 (2) | 0.68485 (16) | 0.0450 (6) | |
| C3 | 0.5716 (3) | 1.0086 (2) | 0.61779 (19) | 0.0583 (7) | |
| H3 | 0.6468 | 1.0242 | 0.5952 | 0.070* | |
| C4 | 0.4774 (3) | 1.0688 (3) | 0.5843 (2) | 0.0662 (9) | |
| H4 | 0.4891 | 1.1245 | 0.5395 | 0.079* | |
| C5 | 0.3652 (3) | 1.0476 (3) | 0.6164 (2) | 0.0702 (9) | |
| H5 | 0.3007 | 1.0886 | 0.5939 | 0.084* | |
| C6 | 0.3501 (3) | 0.9649 (3) | 0.6822 (2) | 0.0679 (9) | |
| H6 | 0.2746 | 0.9494 | 0.7043 | 0.082* | |
| C7 | 0.6676 (2) | 0.8606 (2) | 0.71942 (18) | 0.0494 (7) | |
| H7 | 0.6412 | 0.8068 | 0.7667 | 0.059* | |
| C8 | 0.7239 (3) | 0.7890 (3) | 0.6445 (2) | 0.0597 (8) | |
| H8 | 0.7496 | 0.8417 | 0.5963 | 0.072* | |
| C9 | 0.8298 (3) | 0.7153 (3) | 0.6731 (3) | 0.0842 (11) | |
| H9A | 0.9015 | 0.7616 | 0.6749 | 0.101* | |
| H9B | 0.8168 | 0.6814 | 0.7324 | 0.101* | |
| C10 | 0.8389 (4) | 0.6226 (4) | 0.6016 (3) | 0.1137 (16) | |
| H10A | 0.8922 | 0.6467 | 0.5536 | 0.136* | |
| H10B | 0.8687 | 0.5512 | 0.6278 | 0.136* | |
| C11 | 0.7165 (4) | 0.6053 (4) | 0.5653 (3) | 0.1091 (15) | |
| H11A | 0.7171 | 0.6091 | 0.4995 | 0.131* | |
| H11B | 0.6863 | 0.5301 | 0.5834 | 0.131* | |
| C12 | 0.6404 (3) | 0.6996 (3) | 0.6033 (2) | 0.0747 (10) | |
| H12A | 0.5877 | 0.6688 | 0.6493 | 0.090* | |
| H12B | 0.5930 | 0.7345 | 0.5557 | 0.090* | |
| C13 | 0.7159 (3) | 1.0138 (3) | 0.83381 (19) | 0.0558 (7) | |
| H13 | 0.6433 | 1.0529 | 0.8140 | 0.067* | |
| C14 | 0.8106 (4) | 1.1051 (3) | 0.8523 (2) | 0.0835 (11) | |
| H14A | 0.8828 | 1.0677 | 0.8705 | 0.125* | |
| H14B | 0.7842 | 1.1557 | 0.8999 | 0.125* | |
| H14C | 0.8245 | 1.1494 | 0.7983 | 0.125* | |
| C15 | 0.6889 (3) | 0.9446 (3) | 0.91861 (19) | 0.0537 (7) | |
| C16 | 0.6008 (3) | 0.9804 (3) | 0.9767 (2) | 0.0606 (8) | |
| H16 | 0.5558 | 1.0452 | 0.9620 | 0.073* | |
| C17 | 0.5781 (3) | 0.9215 (4) | 1.0566 (2) | 0.0757 (10) | |
| C18 | 0.6416 (5) | 0.8248 (4) | 1.0777 (3) | 0.0969 (15) | |
| H18 | 0.6254 | 0.7844 | 1.1308 | 0.116* | |
| C19 | 0.7279 (4) | 0.7875 (3) | 1.0216 (3) | 0.0909 (14) | |
| H19 | 0.7700 | 0.7207 | 1.0362 | 0.109* | |
| C20 | 0.7551 (3) | 0.8472 (3) | 0.9425 (2) | 0.0669 (9) | |
| Cl1 | 0.41737 (8) | 0.79949 (9) | 0.79694 (7) | 0.0876 (3) | |
| Cl2 | 0.47184 (9) | 0.97355 (14) | 1.13076 (7) | 0.1212 (5) | |
| N1 | 0.75723 (19) | 0.9378 (2) | 0.76056 (16) | 0.0590 (6) | |
| O1 | 0.8465 (2) | 0.8094 (2) | 0.89205 (18) | 0.0974 (9) | |
| H1A | 0.8471 | 0.8437 | 0.8433 | 0.146* | |
| H1 | 0.7853 | 0.9784 | 0.7146 | 0.117* |
| C1 | 0.0501 (16) | 0.0547 (17) | 0.0533 (16) | −0.0074 (14) | 0.0004 (14) | 0.0055 (13) |
| C2 | 0.0518 (15) | 0.0445 (14) | 0.0386 (14) | −0.0076 (13) | −0.0041 (12) | −0.0018 (12) |
| C3 | 0.0571 (17) | 0.0609 (18) | 0.0567 (17) | −0.0135 (15) | −0.0047 (15) | 0.0086 (15) |
| C4 | 0.088 (2) | 0.0532 (19) | 0.0577 (19) | −0.0095 (18) | −0.0138 (18) | 0.0100 (15) |
| C5 | 0.074 (2) | 0.063 (2) | 0.074 (2) | 0.0047 (18) | −0.0227 (19) | 0.0004 (19) |
| C6 | 0.0472 (15) | 0.078 (2) | 0.079 (2) | −0.0036 (16) | −0.0035 (15) | 0.0018 (19) |
| C7 | 0.0468 (15) | 0.0528 (16) | 0.0485 (16) | −0.0063 (13) | −0.0026 (13) | 0.0001 (13) |
| C8 | 0.0586 (17) | 0.0647 (19) | 0.0558 (18) | −0.0008 (15) | −0.0021 (15) | −0.0062 (15) |
| C9 | 0.0568 (19) | 0.093 (3) | 0.102 (3) | 0.013 (2) | −0.0081 (18) | −0.028 (2) |
| C10 | 0.088 (3) | 0.124 (3) | 0.129 (4) | 0.024 (3) | −0.010 (3) | −0.059 (3) |
| C11 | 0.098 (3) | 0.097 (3) | 0.132 (4) | 0.014 (3) | −0.008 (3) | −0.052 (3) |
| C12 | 0.068 (2) | 0.077 (2) | 0.079 (2) | 0.0014 (19) | −0.0103 (18) | −0.0250 (19) |
| C13 | 0.0533 (16) | 0.0598 (17) | 0.0544 (17) | −0.0024 (15) | −0.0074 (14) | −0.0045 (14) |
| C14 | 0.099 (3) | 0.082 (2) | 0.069 (2) | −0.028 (2) | −0.001 (2) | −0.0123 (19) |
| C15 | 0.0525 (16) | 0.0569 (17) | 0.0516 (16) | −0.0085 (15) | −0.0162 (14) | −0.0034 (14) |
| C16 | 0.0534 (17) | 0.070 (2) | 0.0587 (19) | −0.0094 (16) | −0.0122 (15) | 0.0018 (16) |
| C17 | 0.070 (2) | 0.095 (3) | 0.062 (2) | −0.035 (2) | −0.0145 (18) | 0.000 (2) |
| C18 | 0.145 (4) | 0.086 (3) | 0.060 (2) | −0.051 (3) | −0.037 (3) | 0.013 (2) |
| C19 | 0.143 (4) | 0.059 (2) | 0.071 (3) | −0.007 (2) | −0.057 (3) | 0.001 (2) |
| C20 | 0.081 (2) | 0.059 (2) | 0.060 (2) | 0.0069 (18) | −0.0332 (18) | −0.0136 (16) |
| Cl1 | 0.0671 (5) | 0.1041 (7) | 0.0916 (6) | −0.0106 (5) | 0.0140 (5) | 0.0452 (5) |
| Cl2 | 0.0834 (6) | 0.2043 (14) | 0.0759 (6) | −0.0444 (8) | 0.0151 (5) | −0.0046 (8) |
| N1 | 0.0475 (13) | 0.0749 (17) | 0.0547 (14) | −0.0100 (13) | −0.0024 (11) | −0.0098 (13) |
| O1 | 0.1023 (19) | 0.102 (2) | 0.0875 (18) | 0.0454 (17) | −0.0382 (15) | −0.0257 (16) |
| C1—C6 | 1.363 (4) | C11—H11A | 0.9700 |
| C1—C2 | 1.379 (4) | C11—H11B | 0.9700 |
| C1—Cl1 | 1.740 (3) | C12—H12A | 0.9700 |
| C2—C3 | 1.394 (4) | C12—H12B | 0.9700 |
| C2—C7 | 1.520 (4) | C13—N1 | 1.468 (3) |
| C3—C4 | 1.363 (4) | C13—C15 | 1.515 (4) |
| C3—H3 | 0.9300 | C13—C14 | 1.525 (4) |
| C4—C5 | 1.373 (5) | C13—H13 | 0.9800 |
| C4—H4 | 0.9300 | C14—H14A | 0.9600 |
| C5—C6 | 1.371 (5) | C14—H14B | 0.9600 |
| C5—H5 | 0.9300 | C14—H14C | 0.9600 |
| C6—H6 | 0.9300 | C15—C16 | 1.375 (4) |
| C7—N1 | 1.477 (3) | C15—C20 | 1.394 (4) |
| C7—C8 | 1.518 (4) | C16—C17 | 1.384 (4) |
| C7—H7 | 0.9800 | C16—H16 | 0.9300 |
| C8—C12 | 1.524 (4) | C17—C18 | 1.363 (6) |
| C8—C9 | 1.526 (4) | C17—Cl2 | 1.730 (4) |
| C8—H8 | 0.9800 | C18—C19 | 1.348 (6) |
| C9—C10 | 1.504 (5) | C18—H18 | 0.9300 |
| C9—H9A | 0.9700 | C19—C20 | 1.389 (5) |
| C9—H9B | 0.9700 | C19—H19 | 0.9300 |
| C10—C11 | 1.495 (6) | C20—O1 | 1.344 (4) |
| C10—H10A | 0.9700 | N1—H1 | 0.8826 |
| C10—H10B | 0.9700 | O1—H1A | 0.8200 |
| C11—C12 | 1.495 (5) | ||
| C6—C1—C2 | 122.2 (3) | C10—C11—H11A | 110.2 |
| C6—C1—Cl1 | 117.6 (2) | C12—C11—H11B | 110.2 |
| C2—C1—Cl1 | 120.2 (2) | C10—C11—H11B | 110.2 |
| C1—C2—C3 | 116.1 (3) | H11A—C11—H11B | 108.5 |
| C1—C2—C7 | 124.5 (2) | C11—C12—C8 | 106.7 (3) |
| C3—C2—C7 | 119.4 (2) | C11—C12—H12A | 110.4 |
| C4—C3—C2 | 122.1 (3) | C8—C12—H12A | 110.4 |
| C4—C3—H3 | 118.9 | C11—C12—H12B | 110.4 |
| C2—C3—H3 | 118.9 | C8—C12—H12B | 110.4 |
| C3—C4—C5 | 120.2 (3) | H12A—C12—H12B | 108.6 |
| C3—C4—H4 | 119.9 | N1—C13—C15 | 110.8 (2) |
| C5—C4—H4 | 119.9 | N1—C13—C14 | 108.8 (2) |
| C6—C5—C4 | 118.9 (3) | C15—C13—C14 | 110.9 (2) |
| C6—C5—H5 | 120.6 | N1—C13—H13 | 108.7 |
| C4—C5—H5 | 120.6 | C15—C13—H13 | 108.7 |
| C1—C6—C5 | 120.5 (3) | C14—C13—H13 | 108.7 |
| C1—C6—H6 | 119.7 | C13—C14—H14A | 109.5 |
| C5—C6—H6 | 119.7 | C13—C14—H14B | 109.5 |
| N1—C7—C8 | 109.9 (2) | H14A—C14—H14B | 109.5 |
| N1—C7—C2 | 113.6 (2) | C13—C14—H14C | 109.5 |
| C8—C7—C2 | 111.0 (2) | H14A—C14—H14C | 109.5 |
| N1—C7—H7 | 107.4 | H14B—C14—H14C | 109.5 |
| C8—C7—H7 | 107.4 | C16—C15—C20 | 118.2 (3) |
| C2—C7—H7 | 107.4 | C16—C15—C13 | 120.0 (3) |
| C7—C8—C12 | 113.6 (2) | C20—C15—C13 | 121.7 (3) |
| C7—C8—C9 | 115.5 (3) | C15—C16—C17 | 121.1 (3) |
| C12—C8—C9 | 102.5 (3) | C15—C16—H16 | 119.4 |
| C7—C8—H8 | 108.3 | C17—C16—H16 | 119.4 |
| C12—C8—H8 | 108.3 | C18—C17—C16 | 119.9 (4) |
| C9—C8—H8 | 108.3 | C18—C17—Cl2 | 120.3 (3) |
| C10—C9—C8 | 104.9 (3) | C16—C17—Cl2 | 119.8 (3) |
| C10—C9—H9A | 110.8 | C19—C18—C17 | 120.2 (4) |
| C8—C9—H9A | 110.8 | C19—C18—H18 | 119.9 |
| C10—C9—H9B | 110.8 | C17—C18—H18 | 119.9 |
| C8—C9—H9B | 110.8 | C18—C19—C20 | 121.1 (4) |
| H9A—C9—H9B | 108.8 | C18—C19—H19 | 119.5 |
| C11—C10—C9 | 106.4 (3) | C20—C19—H19 | 119.5 |
| C11—C10—H10A | 110.4 | O1—C20—C19 | 118.2 (3) |
| C9—C10—H10A | 110.4 | O1—C20—C15 | 122.2 (3) |
| C11—C10—H10B | 110.4 | C19—C20—C15 | 119.5 (4) |
| C9—C10—H10B | 110.4 | C13—N1—C7 | 116.4 (2) |
| H10A—C10—H10B | 108.6 | C13—N1—H1 | 111.2 |
| C12—C11—C10 | 107.4 (3) | C7—N1—H1 | 104.5 |
| C12—C11—H11A | 110.2 | C20—O1—H1A | 109.5 |
| C6—C1—C2—C3 | 0.2 (4) | C7—C8—C12—C11 | −154.8 (3) |
| Cl1—C1—C2—C3 | 178.3 (2) | C9—C8—C12—C11 | −29.4 (4) |
| C6—C1—C2—C7 | 179.9 (3) | N1—C13—C15—C16 | −148.4 (2) |
| Cl1—C1—C2—C7 | −1.9 (4) | C14—C13—C15—C16 | 90.6 (3) |
| C1—C2—C3—C4 | 0.0 (4) | N1—C13—C15—C20 | 34.8 (4) |
| C7—C2—C3—C4 | −179.8 (3) | C14—C13—C15—C20 | −86.2 (3) |
| C2—C3—C4—C5 | 0.0 (5) | C20—C15—C16—C17 | −0.1 (4) |
| C3—C4—C5—C6 | −0.2 (5) | C13—C15—C16—C17 | −177.1 (3) |
| C2—C1—C6—C5 | −0.3 (5) | C15—C16—C17—C18 | −1.6 (5) |
| Cl1—C1—C6—C5 | −178.5 (2) | C15—C16—C17—Cl2 | 176.6 (2) |
| C4—C5—C6—C1 | 0.3 (5) | C16—C17—C18—C19 | 1.2 (5) |
| C1—C2—C7—N1 | −119.6 (3) | Cl2—C17—C18—C19 | −177.0 (3) |
| C3—C2—C7—N1 | 60.2 (3) | C17—C18—C19—C20 | 1.0 (6) |
| C1—C2—C7—C8 | 116.1 (3) | C18—C19—C20—O1 | 176.3 (3) |
| C3—C2—C7—C8 | −64.2 (3) | C18—C19—C20—C15 | −2.7 (5) |
| N1—C7—C8—C12 | 175.2 (3) | C16—C15—C20—O1 | −176.8 (3) |
| C2—C7—C8—C12 | −58.3 (3) | C13—C15—C20—O1 | 0.1 (4) |
| N1—C7—C8—C9 | 57.2 (3) | C16—C15—C20—C19 | 2.2 (4) |
| C2—C7—C8—C9 | −176.4 (3) | C13—C15—C20—C19 | 179.1 (3) |
| C7—C8—C9—C10 | 158.9 (3) | C15—C13—N1—C7 | 70.8 (3) |
| C12—C8—C9—C10 | 34.8 (4) | C14—C13—N1—C7 | −166.9 (3) |
| C8—C9—C10—C11 | −27.7 (5) | C8—C7—N1—C13 | 179.4 (2) |
| C9—C10—C11—C12 | 9.1 (5) | C2—C7—N1—C13 | 54.4 (3) |
| C10—C11—C12—C8 | 13.0 (5) |
| H··· | ||||
| O1—H1A···N1 | 0.82 | 1.92 | 2.639 (3) | 146 |
| C3—H3···Cg1i | 0.93 | 2.76 | 3.661 (3) | 164 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1 | 0.82 | 1.92 | 2.639 (3) | 146 |
| C3—H3⋯ | 0.93 | 2.76 | 3.661 (3) | 164 |
Symmetry code: (i) . Cg is the centroid of the C15–C20 benzene ring