| Literature DB >> 21581067 |
Aamer Saeed, Rasheed Ahmad Khera, Naeem Abbas, Ulrich Flörke.
Abstract
In the title mol-ecule, C(13)H(16)FNO, the amide (N-C=O) plane is oriented at an angle of 29.9 (2)° with respect to the aromatic ring. The cyclo-hexane ring adopts the usual chair conformation. In the crystal structure, inter-molecular N-H⋯O hydrogen bonds link the mol-ecules into chains along [100]. A weak C-H⋯F inter-action is also observed. The F atom is disordered over two positions with occupancy factors of 0.873 (3) and 0.127 (3).Entities:
Year: 2008 PMID: 21581067 PMCID: PMC2959534 DOI: 10.1107/S1600536808034478
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H16FNO | |
| Monoclinic, | Mo |
| Hall symbol: P 2yb | Cell parameters from 796 reflections |
| θ = 2.4–28.3° | |
| µ = 0.09 mm−1 | |
| β = 90.090 (17)° | Prism, colourless |
| 0.45 × 0.40 × 0.21 mm | |
| Bruker SMART APEX diffractometer | 1492 independent reflections |
| Radiation source: sealed tube | 1420 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.9°, θmin = 2.4° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 2004) | |
| 5071 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: difference Fourier map | |
| H-atom parameters constrained | |
| 1492 reflections | (Δ/σ)max = 0.001 |
| 150 parameters | Δρmax = 0.25 e Å−3 |
| 1 restraint | Δρmin = −0.17 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| F1 | 0.9633 (3) | 0.6562 (2) | 0.49344 (8) | 0.0376 (4) | 0.873 (3) |
| F2 | 0.249 (2) | 0.9837 (17) | 0.3846 (6) | 0.043 (3)* | 0.127 (3) |
| O1 | 0.2561 (2) | 0.2922 (2) | 0.25636 (8) | 0.0316 (3) | |
| N1 | 0.6841 (3) | 0.2208 (2) | 0.25218 (8) | 0.0206 (3) | |
| H1A | 0.8356 | 0.2505 | 0.2710 | 0.025* | |
| C1 | 0.4794 (3) | 0.3278 (2) | 0.27778 (10) | 0.0208 (3) | |
| C2 | 0.5341 (3) | 0.5002 (2) | 0.33504 (9) | 0.0198 (3) | |
| C3 | 0.7409 (3) | 0.4971 (3) | 0.38818 (10) | 0.0229 (3) | |
| H3A | 0.8556 | 0.3860 | 0.3894 | 0.027* | |
| C4 | 0.7720 (3) | 0.6615 (3) | 0.43877 (10) | 0.0269 (4) | |
| H4A | 0.9080 | 0.6591 | 0.4760 | 0.032* | 0.127 (3) |
| C5 | 0.6128 (4) | 0.8300 (3) | 0.43745 (10) | 0.0288 (4) | |
| H5A | 0.6419 | 0.9416 | 0.4721 | 0.035* | |
| C6 | 0.4084 (4) | 0.8306 (3) | 0.38366 (11) | 0.0295 (4) | |
| H6A | 0.2973 | 0.9439 | 0.3817 | 0.035* | 0.873 (3) |
| C7 | 0.3671 (3) | 0.6659 (3) | 0.33314 (10) | 0.0253 (4) | |
| H7A | 0.2265 | 0.6658 | 0.2976 | 0.030* | |
| C8 | 0.6571 (3) | 0.0567 (2) | 0.19365 (9) | 0.0195 (3) | |
| H8A | 0.4853 | −0.0054 | 0.2003 | 0.023* | |
| C9 | 0.6786 (4) | 0.1391 (3) | 0.10784 (10) | 0.0275 (4) | |
| H9A | 0.5431 | 0.2403 | 0.0984 | 0.033* | |
| H9B | 0.8445 | 0.2074 | 0.1011 | 0.033* | |
| C10 | 0.6542 (4) | −0.0336 (3) | 0.04667 (10) | 0.0299 (4) | |
| H10A | 0.4813 | −0.0920 | 0.0497 | 0.036* | |
| H10B | 0.6781 | 0.0216 | −0.0078 | 0.036* | |
| C11 | 0.8501 (4) | −0.2007 (3) | 0.06182 (11) | 0.0291 (4) | |
| H11A | 1.0228 | −0.1466 | 0.0524 | 0.035* | |
| H11B | 0.8212 | −0.3136 | 0.0240 | 0.035* | |
| C12 | 0.8313 (4) | −0.2802 (3) | 0.14799 (11) | 0.0272 (4) | |
| H12A | 0.6653 | −0.3480 | 0.1555 | 0.033* | |
| H12B | 0.9664 | −0.3818 | 0.1573 | 0.033* | |
| C13 | 0.8582 (3) | −0.1078 (3) | 0.20882 (11) | 0.0232 (3) | |
| H13A | 1.0299 | −0.0476 | 0.2047 | 0.028* | |
| H13B | 0.8379 | −0.1624 | 0.2635 | 0.028* |
| F1 | 0.0405 (8) | 0.0402 (7) | 0.0322 (7) | −0.0017 (6) | −0.0107 (5) | −0.0067 (6) |
| O1 | 0.0177 (6) | 0.0310 (7) | 0.0460 (8) | 0.0009 (5) | −0.0028 (5) | −0.0113 (6) |
| N1 | 0.0172 (6) | 0.0198 (6) | 0.0247 (7) | 0.0003 (5) | −0.0015 (5) | −0.0024 (5) |
| C1 | 0.0197 (8) | 0.0181 (7) | 0.0246 (7) | 0.0002 (6) | 0.0004 (6) | −0.0004 (6) |
| C2 | 0.0197 (8) | 0.0180 (7) | 0.0217 (7) | −0.0015 (6) | 0.0045 (6) | 0.0002 (6) |
| C3 | 0.0231 (8) | 0.0221 (7) | 0.0235 (7) | 0.0014 (6) | 0.0018 (6) | 0.0010 (6) |
| C4 | 0.0270 (9) | 0.0306 (9) | 0.0229 (8) | −0.0040 (7) | 0.0018 (6) | −0.0012 (7) |
| C5 | 0.0314 (9) | 0.0259 (9) | 0.0292 (8) | −0.0041 (7) | 0.0075 (7) | −0.0081 (8) |
| C6 | 0.0268 (9) | 0.0233 (8) | 0.0385 (9) | 0.0044 (7) | 0.0076 (7) | −0.0052 (8) |
| C7 | 0.0214 (8) | 0.0253 (8) | 0.0293 (8) | 0.0023 (7) | 0.0013 (6) | −0.0015 (7) |
| C8 | 0.0169 (7) | 0.0173 (7) | 0.0243 (8) | −0.0005 (6) | −0.0003 (6) | −0.0017 (6) |
| C9 | 0.0376 (10) | 0.0205 (8) | 0.0242 (8) | 0.0018 (7) | −0.0026 (7) | 0.0000 (6) |
| C10 | 0.0367 (10) | 0.0281 (9) | 0.0250 (8) | −0.0007 (8) | −0.0034 (7) | −0.0043 (7) |
| C11 | 0.0290 (9) | 0.0249 (8) | 0.0334 (9) | −0.0032 (8) | 0.0051 (7) | −0.0085 (8) |
| C12 | 0.0284 (9) | 0.0177 (8) | 0.0356 (9) | 0.0023 (7) | −0.0016 (7) | −0.0027 (7) |
| C13 | 0.0221 (8) | 0.0192 (8) | 0.0285 (8) | 0.0014 (6) | −0.0010 (6) | −0.0003 (6) |
| F1—C4 | 1.361 (2) | C8—C13 | 1.538 (2) |
| F2—C6 | 1.315 (11) | C8—C9 | 1.541 (2) |
| O1—C1 | 1.252 (2) | C8—H8A | 1.00 |
| N1—C1 | 1.359 (2) | C9—C10 | 1.538 (2) |
| N1—C8 | 1.468 (2) | C9—H9A | 0.99 |
| N1—H1A | 0.88 | C9—H9B | 0.99 |
| C1—C2 | 1.515 (2) | C10—C11 | 1.531 (3) |
| C2—C7 | 1.404 (2) | C10—H10A | 0.99 |
| C2—C3 | 1.406 (2) | C10—H10B | 0.99 |
| C3—C4 | 1.386 (3) | C11—C12 | 1.540 (3) |
| C3—H3A | 0.95 | C11—H11A | 0.99 |
| C4—C5 | 1.393 (3) | C11—H11B | 0.99 |
| C4—H4A | 0.95 | C12—C13 | 1.534 (2) |
| C5—C6 | 1.403 (3) | C12—H12A | 0.99 |
| C5—H5A | 0.95 | C12—H12B | 0.99 |
| C6—C7 | 1.394 (3) | C13—H13A | 0.99 |
| C6—H6A | 0.95 | C13—H13B | 0.99 |
| C7—H7A | 0.95 | ||
| C1—N1—C8 | 121.23 (14) | C13—C8—H8A | 108.4 |
| C1—N1—H1A | 119.4 | C9—C8—H8A | 108.4 |
| C8—N1—H1A | 119.4 | C10—C9—C8 | 110.76 (15) |
| O1—C1—N1 | 123.89 (15) | C10—C9—H9A | 109.5 |
| O1—C1—C2 | 120.02 (14) | C8—C9—H9A | 109.5 |
| N1—C1—C2 | 116.09 (14) | C10—C9—H9B | 109.5 |
| C7—C2—C3 | 120.72 (15) | C8—C9—H9B | 109.5 |
| C7—C2—C1 | 116.85 (14) | H9A—C9—H9B | 108.1 |
| C3—C2—C1 | 122.42 (15) | C11—C10—C9 | 111.55 (14) |
| C4—C3—C2 | 117.78 (16) | C11—C10—H10A | 109.3 |
| C4—C3—H3A | 121.1 | C9—C10—H10A | 109.3 |
| C2—C3—H3A | 121.1 | C11—C10—H10B | 109.3 |
| F1—C4—C3 | 118.55 (17) | C9—C10—H10B | 109.3 |
| F1—C4—C5 | 118.43 (16) | H10A—C10—H10B | 108.0 |
| C3—C4—C5 | 123.00 (16) | C10—C11—C12 | 110.90 (15) |
| C3—C4—H4A | 118.5 | C10—C11—H11A | 109.5 |
| C5—C4—H4A | 118.5 | C12—C11—H11A | 109.5 |
| C4—C5—C6 | 118.30 (16) | C10—C11—H11B | 109.5 |
| C4—C5—H5A | 120.9 | C12—C11—H11B | 109.5 |
| C6—C5—H5A | 120.9 | H11A—C11—H11B | 108.0 |
| F2—C6—C7 | 120.5 (5) | C13—C12—C11 | 111.33 (15) |
| F2—C6—C5 | 119.0 (5) | C13—C12—H12A | 109.4 |
| C7—C6—C5 | 120.42 (16) | C11—C12—H12A | 109.4 |
| C7—C6—H6A | 119.8 | C13—C12—H12B | 109.4 |
| C5—C6—H6A | 119.8 | C11—C12—H12B | 109.4 |
| C6—C7—C2 | 119.75 (15) | H12A—C12—H12B | 108.0 |
| C6—C7—H7A | 120.1 | C12—C13—C8 | 110.55 (13) |
| C2—C7—H7A | 120.1 | C12—C13—H13A | 109.5 |
| N1—C8—C13 | 110.16 (13) | C8—C13—H13A | 109.5 |
| N1—C8—C9 | 110.86 (13) | C12—C13—H13B | 109.5 |
| C13—C8—C9 | 110.58 (13) | C8—C13—H13B | 109.5 |
| N1—C8—H8A | 108.4 | H13A—C13—H13B | 108.1 |
| C8—N1—C1—O1 | 2.5 (2) | F2—C6—C7—C2 | −177.6 (5) |
| C8—N1—C1—C2 | −177.01 (13) | C5—C6—C7—C2 | −1.2 (3) |
| O1—C1—C2—C7 | −29.1 (2) | C3—C2—C7—C6 | 0.9 (2) |
| N1—C1—C2—C7 | 150.37 (15) | C1—C2—C7—C6 | −179.27 (15) |
| O1—C1—C2—C3 | 150.71 (16) | C1—N1—C8—C13 | −148.28 (15) |
| N1—C1—C2—C3 | −29.8 (2) | C1—N1—C8—C9 | 89.00 (18) |
| C7—C2—C3—C4 | 0.6 (2) | N1—C8—C9—C10 | 179.17 (14) |
| C1—C2—C3—C4 | −179.20 (14) | C13—C8—C9—C10 | 56.69 (18) |
| C2—C3—C4—F1 | 176.62 (15) | C8—C9—C10—C11 | −55.8 (2) |
| C2—C3—C4—C5 | −1.9 (3) | C9—C10—C11—C12 | 55.0 (2) |
| F1—C4—C5—C6 | −176.95 (16) | C10—C11—C12—C13 | −55.56 (19) |
| C3—C4—C5—C6 | 1.6 (3) | C11—C12—C13—C8 | 56.76 (19) |
| C4—C5—C6—F2 | 176.4 (6) | N1—C8—C13—C12 | 179.90 (13) |
| C4—C5—C6—C7 | 0.1 (3) | C9—C8—C13—C12 | −57.21 (18) |
| H··· | ||||
| N1—H1A···O1i | 0.88 | 2.25 | 3.050 (2) | 152 |
| C5—H5A···F1ii | 0.95 | 2.58 | 3.310 (3) | 134 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.88 | 2.25 | 3.050 (2) | 152 |
| C5—H5 | 0.95 | 2.58 | 3.310 (3) | 134 |
Symmetry codes: (i) ; (ii) .