| Literature DB >> 21581045 |
Aamer Saeed, Rasheed Ahmad Khera, Naeem Abbas, Jim Simpson, Roderick G Stanley.
Abstract
In the title compound, C(13)H(16)FNO, the fluoro-benzene ring plane and the plane through the amide unit are inclined at a dihedral angle of 29.92 (7)°. The cyclo-hexane ring adopts a chair conformation. In the crystal structure, N-H⋯O hydrogen bonds, augmented by weak C-H⋯O inter-actions, link the mol-ecules into transverse chains along a. These chains are linked into zigzag columns down a by C-H⋯F hydrogen bonds and C-H⋯π inter-actions.Entities:
Year: 2008 PMID: 21581045 PMCID: PMC2959755 DOI: 10.1107/S1600536808034090
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H16FNO | |
| Monoclinic, | Mo |
| Hall symbol: P 2yb | Cell parameters from 2700 reflections |
| θ = 3.4–32.5° | |
| µ = 0.09 mm−1 | |
| β = 91.336 (6)° | Needle, colourless |
| 0.39 × 0.16 × 0.08 mm | |
| Bruker APEXII CCD area-detector diffractometer | 2117 independent reflections |
| Radiation source: fine-focus sealed tube | 1884 reflections with |
| graphite | |
| ω scans | θmax = 33.4°, θmin = 1.2° |
| Absorption correction: multi-scan (SADABS; Bruker, 2006) | |
| 7905 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2117 reflections | (Δ/σ)max = 0.002 |
| 148 parameters | Δρmax = 0.30 e Å−3 |
| 1 restraint | Δρmin = −0.26 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 1.2369 (2) | 0.9202 (2) | 0.24742 (7) | 0.0187 (3) | |
| C1 | 1.0126 (3) | 0.9513 (2) | 0.22274 (9) | 0.0122 (3) | |
| C2 | 0.9598 (3) | 1.1225 (2) | 0.16419 (9) | 0.0124 (3) | |
| C3 | 0.7571 (3) | 1.1292 (2) | 0.10763 (9) | 0.0142 (3) | |
| F1 | 0.5940 (2) | 0.96735 (18) | 0.10014 (5) | 0.0207 (2) | |
| C4 | 0.7162 (3) | 1.2929 (3) | 0.05603 (9) | 0.0187 (3) | |
| H4 | 0.5765 | 1.2913 | 0.0180 | 0.022* | |
| C5 | 0.8825 (3) | 1.4593 (3) | 0.06068 (10) | 0.0207 (3) | |
| H5 | 0.8553 | 1.5740 | 0.0264 | 0.025* | |
| C6 | 1.0902 (3) | 1.4580 (3) | 0.11584 (10) | 0.0203 (3) | |
| H6 | 1.2055 | 1.5711 | 0.1188 | 0.024* | |
| C7 | 1.1270 (3) | 1.2908 (3) | 0.16621 (9) | 0.0162 (3) | |
| H7 | 1.2697 | 1.2906 | 0.2031 | 0.019* | |
| N1 | 0.8095 (3) | 0.8430 (2) | 0.24730 (8) | 0.0129 (3) | |
| HN1 | 0.655 (4) | 0.883 (4) | 0.2321 (12) | 0.015* | |
| C8 | 0.8378 (3) | 0.6807 (2) | 0.30746 (9) | 0.0120 (3) | |
| H8 | 1.0140 | 0.6199 | 0.3028 | 0.014* | |
| C9 | 0.6393 (3) | 0.5126 (2) | 0.29046 (10) | 0.0144 (3) | |
| H9A | 0.6632 | 0.4574 | 0.2358 | 0.017* | |
| H9B | 0.4631 | 0.5708 | 0.2927 | 0.017* | |
| C10 | 0.6683 (3) | 0.3397 (3) | 0.35200 (10) | 0.0181 (3) | |
| H10A | 0.8385 | 0.2730 | 0.3462 | 0.022* | |
| H10B | 0.5329 | 0.2354 | 0.3416 | 0.022* | |
| C11 | 0.6456 (3) | 0.4213 (3) | 0.43778 (10) | 0.0193 (3) | |
| H11A | 0.4685 | 0.4736 | 0.4455 | 0.023* | |
| H11B | 0.6765 | 0.3084 | 0.4765 | 0.023* | |
| C12 | 0.8402 (3) | 0.5932 (3) | 0.45444 (10) | 0.0184 (3) | |
| H12A | 0.8131 | 0.6494 | 0.5088 | 0.022* | |
| H12B | 1.0175 | 0.5368 | 0.4532 | 0.022* | |
| C13 | 0.8128 (3) | 0.7651 (3) | 0.39258 (9) | 0.0167 (3) | |
| H13A | 0.9481 | 0.8695 | 0.4029 | 0.020* | |
| H13B | 0.6425 | 0.8319 | 0.3977 | 0.020* |
| O1 | 0.0108 (5) | 0.0210 (6) | 0.0242 (6) | −0.0001 (4) | −0.0012 (4) | 0.0060 (5) |
| C1 | 0.0126 (6) | 0.0105 (6) | 0.0135 (6) | 0.0003 (5) | 0.0004 (5) | 0.0002 (5) |
| C2 | 0.0123 (6) | 0.0121 (6) | 0.0127 (6) | 0.0005 (5) | 0.0017 (5) | 0.0002 (5) |
| C3 | 0.0137 (6) | 0.0154 (7) | 0.0134 (6) | −0.0003 (6) | 0.0008 (5) | 0.0008 (6) |
| F1 | 0.0216 (5) | 0.0223 (5) | 0.0178 (4) | −0.0069 (4) | −0.0065 (4) | 0.0005 (4) |
| C4 | 0.0184 (7) | 0.0235 (8) | 0.0143 (6) | 0.0043 (7) | 0.0022 (5) | 0.0036 (6) |
| C5 | 0.0218 (7) | 0.0200 (8) | 0.0207 (7) | 0.0060 (6) | 0.0061 (6) | 0.0080 (7) |
| C6 | 0.0204 (7) | 0.0151 (7) | 0.0256 (8) | −0.0007 (6) | 0.0061 (6) | 0.0043 (7) |
| C7 | 0.0151 (7) | 0.0149 (7) | 0.0186 (7) | −0.0016 (6) | 0.0012 (5) | 0.0012 (6) |
| N1 | 0.0103 (5) | 0.0135 (6) | 0.0149 (6) | −0.0007 (5) | −0.0013 (4) | 0.0032 (5) |
| C8 | 0.0114 (6) | 0.0108 (6) | 0.0136 (6) | 0.0003 (5) | −0.0010 (5) | 0.0021 (5) |
| C9 | 0.0133 (6) | 0.0115 (7) | 0.0183 (7) | −0.0011 (5) | −0.0006 (5) | −0.0004 (5) |
| C10 | 0.0191 (7) | 0.0121 (7) | 0.0230 (8) | −0.0011 (6) | −0.0002 (6) | 0.0026 (6) |
| C11 | 0.0188 (7) | 0.0177 (8) | 0.0215 (7) | 0.0016 (6) | 0.0029 (6) | 0.0071 (6) |
| C12 | 0.0224 (7) | 0.0175 (8) | 0.0152 (7) | 0.0007 (6) | −0.0011 (6) | 0.0028 (6) |
| C13 | 0.0234 (7) | 0.0122 (7) | 0.0142 (6) | −0.0008 (6) | −0.0023 (6) | 0.0004 (5) |
| O1—C1 | 1.2402 (18) | C8—C13 | 1.529 (2) |
| C1—N1 | 1.3395 (19) | C8—H8 | 1.0000 |
| C1—C2 | 1.504 (2) | C9—C10 | 1.530 (2) |
| C2—C3 | 1.395 (2) | C9—H9A | 0.9900 |
| C2—C7 | 1.399 (2) | C9—H9B | 0.9900 |
| C3—F1 | 1.3571 (19) | C10—C11 | 1.532 (2) |
| C3—C4 | 1.384 (2) | C10—H10A | 0.9900 |
| C4—C5 | 1.388 (3) | C10—H10B | 0.9900 |
| C4—H4 | 0.9500 | C11—C12 | 1.530 (2) |
| C5—C6 | 1.398 (2) | C11—H11A | 0.9900 |
| C5—H5 | 0.9500 | C11—H11B | 0.9900 |
| C6—C7 | 1.387 (2) | C12—C13 | 1.528 (2) |
| C6—H6 | 0.9500 | C12—H12A | 0.9900 |
| C7—H7 | 0.9500 | C12—H12B | 0.9900 |
| N1—C8 | 1.4632 (19) | C13—H13A | 0.9900 |
| N1—HN1 | 0.87 (2) | C13—H13B | 0.9900 |
| C8—C9 | 1.526 (2) | ||
| O1—C1—N1 | 123.26 (14) | C8—C9—C10 | 110.57 (12) |
| O1—C1—C2 | 119.42 (13) | C8—C9—H9A | 109.5 |
| N1—C1—C2 | 117.29 (12) | C10—C9—H9A | 109.5 |
| C3—C2—C7 | 116.58 (14) | C8—C9—H9B | 109.5 |
| C3—C2—C1 | 125.69 (14) | C10—C9—H9B | 109.5 |
| C7—C2—C1 | 117.74 (13) | H9A—C9—H9B | 108.1 |
| F1—C3—C4 | 117.29 (13) | C9—C10—C11 | 111.03 (14) |
| F1—C3—C2 | 119.65 (14) | C9—C10—H10A | 109.4 |
| C4—C3—C2 | 123.03 (15) | C11—C10—H10A | 109.4 |
| C3—C4—C5 | 118.96 (14) | C9—C10—H10B | 109.4 |
| C3—C4—H4 | 120.5 | C11—C10—H10B | 109.4 |
| C5—C4—H4 | 120.5 | H10A—C10—H10B | 108.0 |
| C4—C5—C6 | 119.94 (15) | C12—C11—C10 | 111.09 (14) |
| C4—C5—H5 | 120.0 | C12—C11—H11A | 109.4 |
| C6—C5—H5 | 120.0 | C10—C11—H11A | 109.4 |
| C7—C6—C5 | 119.64 (16) | C12—C11—H11B | 109.4 |
| C7—C6—H6 | 120.2 | C10—C11—H11B | 109.4 |
| C5—C6—H6 | 120.2 | H11A—C11—H11B | 108.0 |
| C6—C7—C2 | 121.84 (14) | C13—C12—C11 | 111.48 (13) |
| C6—C7—H7 | 119.1 | C13—C12—H12A | 109.3 |
| C2—C7—H7 | 119.1 | C11—C12—H12A | 109.3 |
| C1—N1—C8 | 121.65 (12) | C13—C12—H12B | 109.3 |
| C1—N1—HN1 | 118.4 (16) | C11—C12—H12B | 109.3 |
| C8—N1—HN1 | 119.3 (15) | H12A—C12—H12B | 108.0 |
| N1—C8—C9 | 109.73 (12) | C12—C13—C8 | 110.57 (13) |
| N1—C8—C13 | 111.36 (12) | C12—C13—H13A | 109.5 |
| C9—C8—C13 | 111.09 (13) | C8—C13—H13A | 109.5 |
| N1—C8—H8 | 108.2 | C12—C13—H13B | 109.5 |
| C9—C8—H8 | 108.2 | C8—C13—H13B | 109.5 |
| C13—C8—H8 | 108.2 | H13A—C13—H13B | 108.1 |
| O1—C1—C2—C3 | 152.45 (16) | C1—C2—C7—C6 | −178.45 (14) |
| N1—C1—C2—C3 | −29.4 (2) | O1—C1—N1—C8 | 1.5 (2) |
| O1—C1—C2—C7 | −27.8 (2) | C2—C1—N1—C8 | −176.60 (13) |
| N1—C1—C2—C7 | 150.43 (14) | C1—N1—C8—C9 | −147.62 (14) |
| C7—C2—C3—F1 | 177.27 (13) | C1—N1—C8—C13 | 88.97 (17) |
| C1—C2—C3—F1 | −2.9 (2) | N1—C8—C9—C10 | 179.13 (12) |
| C7—C2—C3—C4 | −0.8 (2) | C13—C8—C9—C10 | −57.29 (16) |
| C1—C2—C3—C4 | 179.00 (14) | C8—C9—C10—C11 | 56.43 (17) |
| F1—C3—C4—C5 | −178.59 (14) | C9—C10—C11—C12 | −55.36 (18) |
| C2—C3—C4—C5 | −0.5 (2) | C10—C11—C12—C13 | 55.12 (19) |
| C3—C4—C5—C6 | 1.2 (2) | C11—C12—C13—C8 | −55.66 (18) |
| C4—C5—C6—C7 | −0.7 (3) | N1—C8—C13—C12 | 179.44 (13) |
| C5—C6—C7—C2 | −0.7 (2) | C9—C8—C13—C12 | 56.80 (17) |
| C3—C2—C7—C6 | 1.4 (2) |
| H··· | ||||
| N1—HN1···O1i | 0.87 (2) | 2.20 (2) | 3.0092 (18) | 153.8 (19) |
| C9—H9B···O1i | 0.99 | 2.67 | 3.446 (2) | 136 |
| C4—H4···F1ii | 0.95 | 2.43 | 3.2326 (19) | 142 |
| C5—H5···Cg1iii | 0.95 | 2.96 | 3.759 (2) | 142 |
| C9—H9A···Cg1iv | 0.99 | 2.71 | 3.644 (2) | 157 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H | 0.87 (2) | 2.20 (2) | 3.0092 (18) | 153.8 (19) |
| C9—H9 | 0.99 | 2.67 | 3.446 (2) | 136 |
| C4—H4⋯F1ii | 0.95 | 2.43 | 3.2326 (19) | 142 |
| C5—H5⋯ | 0.95 | 2.96 | 3.759 (2) | 142 |
| C9—H9 | 0.99 | 2.71 | 3.644 (2) | 157 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) . Cg1 is the centroid of the C2–C7 benzene ring.