Literature DB >> 21581045

N-Cyclo-hexyl-2-fluoro-benzamide.

Aamer Saeed, Rasheed Ahmad Khera, Naeem Abbas, Jim Simpson, Roderick G Stanley.   

Abstract

In the title compound, C(13)H(16)FNO, the fluoro-benzene ring plane and the plane through the amide unit are inclined at a dihedral angle of 29.92 (7)°. The cyclo-hexane ring adopts a chair conformation. In the crystal structure, N-H⋯O hydrogen bonds, augmented by weak C-H⋯O inter-actions, link the mol-ecules into transverse chains along a. These chains are linked into zigzag columns down a by C-H⋯F hydrogen bonds and C-H⋯π inter-actions.

Entities:  

Year:  2008        PMID: 21581045      PMCID: PMC2959755          DOI: 10.1107/S1600536808034090

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background see: Saeed et al. (2008 ▶). For related structures, see: Kobal et al. (1990 ▶); Chopra & Guru Row (2008 ▶); Donnelly et al. (2008 ▶); Hou et al. (2004 ▶); Saeed et al. (2008 ▶). For information on the Cambridge Structural Database, see: Allen (2002 ▶). For ring puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C13H16FNO M = 221.27 Monoclinic, a = 5.1804 (6) Å b = 6.5309 (8) Å c = 16.6522 (19) Å β = 91.336 (6)° V = 563.24 (11) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 91 (2) K 0.39 × 0.16 × 0.08 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2006 ▶) T min = 0.822, T max = 0.993 7905 measured reflections 2117 independent reflections 1884 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.114 S = 1.12 2117 reflections 148 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.26 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: APEX2 and SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶) and TITAN (Hunter & Simpson, 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) and TITAN; molecular graphics: ORTEPIII (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97, enCIFer (Allen et al., 2004 ▶), PLATON (Spek, 2003 ▶) and publCIF (Westrip, 2008 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808034090/lh2713sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808034090/lh2713Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H16FNOF(000) = 236
Mr = 221.27Dx = 1.305 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 2700 reflections
a = 5.1804 (6) Åθ = 3.4–32.5°
b = 6.5309 (8) ŵ = 0.09 mm1
c = 16.6522 (19) ÅT = 91 K
β = 91.336 (6)°Needle, colourless
V = 563.24 (11) Å30.39 × 0.16 × 0.08 mm
Z = 2
Bruker APEXII CCD area-detector diffractometer2117 independent reflections
Radiation source: fine-focus sealed tube1884 reflections with I > 2σ(I)
graphiteRint = 0.031
ω scansθmax = 33.4°, θmin = 1.2°
Absorption correction: multi-scan (SADABS; Bruker, 2006)h = −7→7
Tmin = 0.822, Tmax = 0.993k = −8→9
7905 measured reflectionsl = −25→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114H atoms treated by a mixture of independent and constrained refinement
S = 1.12w = 1/[σ2(Fo2) + (0.0702P)2 + 0.0113P] where P = (Fo2 + 2Fc2)/3
2117 reflections(Δ/σ)max = 0.002
148 parametersΔρmax = 0.30 e Å3
1 restraintΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.2369 (2)0.9202 (2)0.24742 (7)0.0187 (3)
C11.0126 (3)0.9513 (2)0.22274 (9)0.0122 (3)
C20.9598 (3)1.1225 (2)0.16419 (9)0.0124 (3)
C30.7571 (3)1.1292 (2)0.10763 (9)0.0142 (3)
F10.5940 (2)0.96735 (18)0.10014 (5)0.0207 (2)
C40.7162 (3)1.2929 (3)0.05603 (9)0.0187 (3)
H40.57651.29130.01800.022*
C50.8825 (3)1.4593 (3)0.06068 (10)0.0207 (3)
H50.85531.57400.02640.025*
C61.0902 (3)1.4580 (3)0.11584 (10)0.0203 (3)
H61.20551.57110.11880.024*
C71.1270 (3)1.2908 (3)0.16621 (9)0.0162 (3)
H71.26971.29060.20310.019*
N10.8095 (3)0.8430 (2)0.24730 (8)0.0129 (3)
HN10.655 (4)0.883 (4)0.2321 (12)0.015*
C80.8378 (3)0.6807 (2)0.30746 (9)0.0120 (3)
H81.01400.61990.30280.014*
C90.6393 (3)0.5126 (2)0.29046 (10)0.0144 (3)
H9A0.66320.45740.23580.017*
H9B0.46310.57080.29270.017*
C100.6683 (3)0.3397 (3)0.35200 (10)0.0181 (3)
H10A0.83850.27300.34620.022*
H10B0.53290.23540.34160.022*
C110.6456 (3)0.4213 (3)0.43778 (10)0.0193 (3)
H11A0.46850.47360.44550.023*
H11B0.67650.30840.47650.023*
C120.8402 (3)0.5932 (3)0.45444 (10)0.0184 (3)
H12A0.81310.64940.50880.022*
H12B1.01750.53680.45320.022*
C130.8128 (3)0.7651 (3)0.39258 (9)0.0167 (3)
H13A0.94810.86950.40290.020*
H13B0.64250.83190.39770.020*
U11U22U33U12U13U23
O10.0108 (5)0.0210 (6)0.0242 (6)−0.0001 (4)−0.0012 (4)0.0060 (5)
C10.0126 (6)0.0105 (6)0.0135 (6)0.0003 (5)0.0004 (5)0.0002 (5)
C20.0123 (6)0.0121 (6)0.0127 (6)0.0005 (5)0.0017 (5)0.0002 (5)
C30.0137 (6)0.0154 (7)0.0134 (6)−0.0003 (6)0.0008 (5)0.0008 (6)
F10.0216 (5)0.0223 (5)0.0178 (4)−0.0069 (4)−0.0065 (4)0.0005 (4)
C40.0184 (7)0.0235 (8)0.0143 (6)0.0043 (7)0.0022 (5)0.0036 (6)
C50.0218 (7)0.0200 (8)0.0207 (7)0.0060 (6)0.0061 (6)0.0080 (7)
C60.0204 (7)0.0151 (7)0.0256 (8)−0.0007 (6)0.0061 (6)0.0043 (7)
C70.0151 (7)0.0149 (7)0.0186 (7)−0.0016 (6)0.0012 (5)0.0012 (6)
N10.0103 (5)0.0135 (6)0.0149 (6)−0.0007 (5)−0.0013 (4)0.0032 (5)
C80.0114 (6)0.0108 (6)0.0136 (6)0.0003 (5)−0.0010 (5)0.0021 (5)
C90.0133 (6)0.0115 (7)0.0183 (7)−0.0011 (5)−0.0006 (5)−0.0004 (5)
C100.0191 (7)0.0121 (7)0.0230 (8)−0.0011 (6)−0.0002 (6)0.0026 (6)
C110.0188 (7)0.0177 (8)0.0215 (7)0.0016 (6)0.0029 (6)0.0071 (6)
C120.0224 (7)0.0175 (8)0.0152 (7)0.0007 (6)−0.0011 (6)0.0028 (6)
C130.0234 (7)0.0122 (7)0.0142 (6)−0.0008 (6)−0.0023 (6)0.0004 (5)
O1—C11.2402 (18)C8—C131.529 (2)
C1—N11.3395 (19)C8—H81.0000
C1—C21.504 (2)C9—C101.530 (2)
C2—C31.395 (2)C9—H9A0.9900
C2—C71.399 (2)C9—H9B0.9900
C3—F11.3571 (19)C10—C111.532 (2)
C3—C41.384 (2)C10—H10A0.9900
C4—C51.388 (3)C10—H10B0.9900
C4—H40.9500C11—C121.530 (2)
C5—C61.398 (2)C11—H11A0.9900
C5—H50.9500C11—H11B0.9900
C6—C71.387 (2)C12—C131.528 (2)
C6—H60.9500C12—H12A0.9900
C7—H70.9500C12—H12B0.9900
N1—C81.4632 (19)C13—H13A0.9900
N1—HN10.87 (2)C13—H13B0.9900
C8—C91.526 (2)
O1—C1—N1123.26 (14)C8—C9—C10110.57 (12)
O1—C1—C2119.42 (13)C8—C9—H9A109.5
N1—C1—C2117.29 (12)C10—C9—H9A109.5
C3—C2—C7116.58 (14)C8—C9—H9B109.5
C3—C2—C1125.69 (14)C10—C9—H9B109.5
C7—C2—C1117.74 (13)H9A—C9—H9B108.1
F1—C3—C4117.29 (13)C9—C10—C11111.03 (14)
F1—C3—C2119.65 (14)C9—C10—H10A109.4
C4—C3—C2123.03 (15)C11—C10—H10A109.4
C3—C4—C5118.96 (14)C9—C10—H10B109.4
C3—C4—H4120.5C11—C10—H10B109.4
C5—C4—H4120.5H10A—C10—H10B108.0
C4—C5—C6119.94 (15)C12—C11—C10111.09 (14)
C4—C5—H5120.0C12—C11—H11A109.4
C6—C5—H5120.0C10—C11—H11A109.4
C7—C6—C5119.64 (16)C12—C11—H11B109.4
C7—C6—H6120.2C10—C11—H11B109.4
C5—C6—H6120.2H11A—C11—H11B108.0
C6—C7—C2121.84 (14)C13—C12—C11111.48 (13)
C6—C7—H7119.1C13—C12—H12A109.3
C2—C7—H7119.1C11—C12—H12A109.3
C1—N1—C8121.65 (12)C13—C12—H12B109.3
C1—N1—HN1118.4 (16)C11—C12—H12B109.3
C8—N1—HN1119.3 (15)H12A—C12—H12B108.0
N1—C8—C9109.73 (12)C12—C13—C8110.57 (13)
N1—C8—C13111.36 (12)C12—C13—H13A109.5
C9—C8—C13111.09 (13)C8—C13—H13A109.5
N1—C8—H8108.2C12—C13—H13B109.5
C9—C8—H8108.2C8—C13—H13B109.5
C13—C8—H8108.2H13A—C13—H13B108.1
O1—C1—C2—C3152.45 (16)C1—C2—C7—C6−178.45 (14)
N1—C1—C2—C3−29.4 (2)O1—C1—N1—C81.5 (2)
O1—C1—C2—C7−27.8 (2)C2—C1—N1—C8−176.60 (13)
N1—C1—C2—C7150.43 (14)C1—N1—C8—C9−147.62 (14)
C7—C2—C3—F1177.27 (13)C1—N1—C8—C1388.97 (17)
C1—C2—C3—F1−2.9 (2)N1—C8—C9—C10179.13 (12)
C7—C2—C3—C4−0.8 (2)C13—C8—C9—C10−57.29 (16)
C1—C2—C3—C4179.00 (14)C8—C9—C10—C1156.43 (17)
F1—C3—C4—C5−178.59 (14)C9—C10—C11—C12−55.36 (18)
C2—C3—C4—C5−0.5 (2)C10—C11—C12—C1355.12 (19)
C3—C4—C5—C61.2 (2)C11—C12—C13—C8−55.66 (18)
C4—C5—C6—C7−0.7 (3)N1—C8—C13—C12179.44 (13)
C5—C6—C7—C2−0.7 (2)C9—C8—C13—C1256.80 (17)
C3—C2—C7—C61.4 (2)
D—H···AD—HH···AD···AD—H···A
N1—HN1···O1i0.87 (2)2.20 (2)3.0092 (18)153.8 (19)
C9—H9B···O1i0.992.673.446 (2)136
C4—H4···F1ii0.952.433.2326 (19)142
C5—H5···Cg1iii0.952.963.759 (2)142
C9—H9A···Cg1iv0.992.713.644 (2)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—HN1⋯O1i0.87 (2)2.20 (2)3.0092 (18)153.8 (19)
C9—H9B⋯O1i0.992.673.446 (2)136
C4—H4⋯F1ii0.952.433.2326 (19)142
C5—H5⋯Cg1iii0.952.963.759 (2)142
C9—H9ACg1iv0.992.713.644 (2)157

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) . Cg1 is the centroid of the C2–C7 benzene ring.

  4 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Assembling an isomer grid: the isomorphous 4-, 3- and 2-fluoro-N'-(4-pyridyl)benzamides.

Authors:  Katie Donnelly; John F Gallagher; Alan J Lough
Journal:  Acta Crystallogr C       Date:  2008-05-21       Impact factor: 1.172

4.  4-Chloro-N-(3-methoxy-phen-yl)-benz-amide.

Authors:  Aamer Saeed; Rasheed Ahmad Khera; Naeem Abbas; Jim Simpson; Roderick G Stanley
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-20
  4 in total
  2 in total

1.  2-Fluoro-N-o-tolyl-benzamide.

Authors:  Aamer Saeed; Rasheed Ahmad Khera; Shahid Ameen; Jim Simpson; Roderick G Stanley
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-24

2.  2-Chloro-N-(4-meth-oxy-phen-yl)benzamide.

Authors:  Aamer Saeed; Jim Simpson
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-30
  2 in total

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