Literature DB >> 21581013

4,4'-Imino-dipyridinium bis-(hydrogen phthalate).

David P Martin1, Robert L Laduca.   

Abstract

In the title salt, C(10)H(11)N(3) (2+)·2C(8)H(5)O(4) (-), doubly protonated 4,4'-dipyridylamine (dpa) cations participate in N-H⋯O hydrogen bonding with two hydrogen phthalate anions to form a neutral unit. Both anions contain an intramolecular O-H⋯O hydrogen bond. In the crystal structure, these units form two-dimensional layers through π-π stacking inter-actions with a centroid-to-centroid distance of 3.763 (3) Å. In turn, these layers aggregate in three dimensions by additional N-H⋯O hydrogen bonding. The assignment to the noncentrosymmetric space group P1 is corroborated by chemically unreasonable aromatic ring bond distances and poor K scale factor distributions for a disordered model in the centrosymmetric P space group.

Entities:  

Year:  2008        PMID: 21581013      PMCID: PMC2959574          DOI: 10.1107/S1600536808031681

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of dpa, see: Cordes et al. (2006 ▶). For a chiral dpa-containing coordination polymer, see: Montney et al. (2007 ▶). For carboxylic acid/imine co-crystals, see: Horiuchi et al. (2005 ▶); Bhogala & Nangia (2003 ▶). For charge-separated hydrogen bonding, see: Steiner (2002 ▶). For the preparation of dpa, see: Zapf et al. (1998 ▶).

Experimental

Crystal data

C10H11N3 2+·2C8H5O4 − M = 503.46 Triclinic, a = 7.858 (2) Å b = 8.101 (2) Å c = 9.601 (3) Å α = 85.673 (5)° β = 85.186 (5)° γ = 68.834 (4)° V = 567.3 (3) Å3 Z = 1 Mo Kα radiation μ = 0.11 mm−1 T = 293 (2) K 0.75 × 0.60 × 0.30 mm

Data collection

Bruker SMART 1K diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.831, T max = 0.967 6282 measured reflections 2513 independent reflections 2269 reflections with I > 2σ(I) R int = 0.014

Refinement

R[F 2 > 2σ(F 2)] = 0.060 wR(F 2) = 0.170 S = 1.06 2513 reflections 349 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.56 e Å−3 Δρmin = −0.32 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT-Plus (Bruker, 2003 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: CrystalMaker (Palmer, 2005 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808031681/lh2702sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808031681/lh2702Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H11N32+·2C8H5O4Z = 1
Mr = 503.46F(000) = 262
Triclinic, P1Dx = 1.474 Mg m3
Hall symbol: P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.858 (2) ÅCell parameters from 6282 reflections
b = 8.101 (2) Åθ = 2.1–28.0°
c = 9.601 (3) ŵ = 0.11 mm1
α = 85.673 (5)°T = 293 K
β = 85.186 (5)°Block, colourless
γ = 68.834 (4)°0.75 × 0.60 × 0.30 mm
V = 567.3 (3) Å3
Bruker SMART 1K diffractometer2513 independent reflections
Radiation source: fine-focus sealed tube2269 reflections with I > 2σ(I)
graphiteRint = 0.014
ω scansθmax = 28.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −10→10
Tmin = 0.831, Tmax = 0.967k = −10→10
6282 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.060Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.170H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0871P)2 + 0.2863P] where P = (Fo2 + 2Fc2)/3
2513 reflections(Δ/σ)max < 0.001
349 parametersΔρmax = 0.56 e Å3
6 restraintsΔρmin = −0.32 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.9711 (7)0.8965 (7)1.1049 (4)0.0832 (14)
O2−0.7469 (5)0.7612 (6)1.2383 (5)0.0712 (12)
O3−0.6750 (5)0.5656 (7)1.4411 (6)0.0824 (14)
H3A−0.691 (11)0.624 (10)1.337 (9)0.099*
O4−0.8021 (6)0.3983 (6)1.5649 (5)0.0780 (13)
O50.3019 (7)1.2225 (8)0.2453 (5)0.0926 (17)
O60.0684 (5)1.3566 (6)0.1220 (5)0.0709 (12)
H7A0.043 (9)1.430 (9)0.028 (8)0.085*
O7−0.0087 (5)1.5473 (6)−0.0843 (5)0.0802 (13)
O80.1036 (5)1.7269 (5)−0.2062 (4)0.0654 (10)
N1−0.6896 (8)0.9599 (7)0.9469 (5)0.0655 (14)
H1N−0.780 (6)0.944 (9)0.995 (6)0.079*
N2−0.0792 (9)1.2304 (7)0.3688 (5)0.0760 (18)
H2N−0.047 (10)1.285 (8)0.299 (5)0.091*
N3−0.2299 (5)0.9798 (5)0.7185 (4)0.0495 (8)
H3N−0.121 (5)0.902 (6)0.751 (6)0.059*
C1−0.7118 (7)1.0624 (9)0.8305 (7)0.0714 (17)
H1−0.82891.12820.80310.086*
C2−0.5601 (8)1.0716 (7)0.7497 (5)0.0605 (14)
H2−0.57471.14240.66740.073*
C3−0.3924 (6)0.9770 (7)0.7916 (5)0.0533 (12)
C4−0.3767 (8)0.8754 (8)0.9177 (6)0.0689 (16)
H4−0.26250.81220.95170.083*
C5−0.5320 (10)0.8709 (8)0.9894 (6)0.0713 (16)
H5−0.52260.80091.07180.086*
C60.0413 (8)1.1117 (8)0.4402 (7)0.0668 (15)
H60.16431.08110.41150.080*
C7−0.0060 (7)1.0321 (7)0.5539 (6)0.0607 (13)
H70.08430.94710.60420.073*
C8−0.1878 (8)1.0729 (6)0.5996 (5)0.0517 (11)
C9−0.3186 (7)1.1998 (8)0.5237 (6)0.0618 (14)
H9−0.44241.23130.55000.074*
C10−0.2574 (9)1.2797 (8)0.4051 (6)0.0697 (15)
H10−0.34141.36730.35170.084*
C11−1.0440 (6)0.7547 (6)1.3134 (4)0.0392 (9)
C12−1.2276 (6)0.8392 (7)1.2857 (5)0.0508 (11)
H12−1.25730.91501.20650.061*
C13−1.3670 (7)0.8140 (8)1.3720 (7)0.0642 (14)
H13−1.48810.87141.35020.077*
C14−1.3265 (7)0.7059 (8)1.4877 (6)0.0639 (15)
H14−1.42030.69221.54770.077*
C15−1.1462 (7)0.6149 (7)1.5178 (5)0.0547 (12)
H15−1.12070.53801.59670.066*
C16−1.0025 (6)0.6360 (5)1.4328 (4)0.0384 (9)
C17−0.9122 (7)0.8067 (6)1.2125 (5)0.0493 (11)
C18−0.8166 (7)0.5225 (7)1.4825 (6)0.0586 (12)
C210.3638 (5)1.3702 (5)0.0345 (4)0.0391 (9)
C220.5473 (7)1.2878 (7)0.0605 (5)0.0535 (12)
H220.57971.21250.13960.064*
C230.6836 (7)1.3158 (8)−0.0294 (7)0.0640 (14)
H230.80601.2567−0.01200.077*
C240.6362 (7)1.4317 (9)−0.1449 (6)0.0632 (14)
H240.72591.4535−0.20480.076*
C250.4570 (7)1.5131 (7)−0.1694 (5)0.0539 (12)
H250.42651.5892−0.24830.065*
C260.3158 (6)1.4886 (6)−0.0825 (4)0.0420 (9)
C270.2367 (8)1.3142 (7)0.1443 (5)0.0548 (12)
C280.1238 (6)1.5967 (6)−0.1279 (5)0.0488 (10)
U11U22U33U12U13U23
O10.080 (3)0.110 (4)0.055 (2)−0.037 (3)0.000 (2)0.034 (2)
O20.044 (2)0.090 (3)0.076 (3)−0.0278 (18)0.0088 (17)0.023 (2)
O30.0427 (19)0.099 (3)0.106 (3)−0.030 (2)−0.022 (2)0.032 (3)
O40.081 (3)0.072 (3)0.072 (3)−0.020 (2)−0.018 (2)0.032 (2)
O50.083 (3)0.134 (5)0.058 (2)−0.047 (3)0.000 (2)0.048 (3)
O60.046 (2)0.083 (3)0.079 (3)−0.0271 (18)0.0162 (18)0.022 (2)
O70.0424 (18)0.088 (3)0.108 (3)−0.0269 (18)−0.0145 (19)0.040 (2)
O80.054 (2)0.064 (2)0.071 (2)−0.0164 (17)−0.0107 (17)0.0269 (18)
N10.071 (3)0.081 (3)0.061 (3)−0.051 (3)0.032 (2)−0.020 (2)
N20.125 (5)0.062 (3)0.051 (2)−0.054 (3)0.037 (3)0.000 (2)
N30.0458 (17)0.056 (2)0.0426 (18)−0.0175 (15)0.0023 (14)0.0135 (15)
C10.040 (3)0.084 (4)0.082 (4)−0.008 (3)−0.013 (2)−0.014 (3)
C20.084 (4)0.056 (3)0.039 (2)−0.024 (3)−0.011 (2)0.018 (2)
C30.045 (2)0.070 (3)0.050 (3)−0.028 (2)0.0135 (19)−0.015 (2)
C40.063 (3)0.066 (3)0.051 (3)0.006 (2)−0.005 (2)0.010 (2)
C50.098 (5)0.059 (3)0.049 (3)−0.025 (3)0.005 (3)0.018 (2)
C60.054 (3)0.066 (3)0.083 (4)−0.028 (2)0.018 (3)−0.015 (3)
C70.049 (3)0.067 (3)0.057 (3)−0.009 (2)−0.007 (2)−0.003 (2)
C80.076 (3)0.043 (2)0.038 (2)−0.027 (2)0.011 (2)0.0008 (17)
C90.044 (2)0.078 (4)0.063 (3)−0.021 (2)0.007 (2)−0.014 (3)
C100.082 (4)0.058 (3)0.058 (3)−0.012 (3)−0.018 (3)0.014 (2)
C110.037 (2)0.048 (2)0.0359 (19)−0.0200 (17)−0.0010 (16)0.0031 (16)
C120.040 (2)0.059 (3)0.051 (3)−0.016 (2)−0.0064 (19)0.009 (2)
C130.036 (2)0.077 (4)0.077 (4)−0.018 (2)−0.004 (2)0.002 (3)
C140.047 (3)0.078 (4)0.076 (4)−0.037 (3)0.015 (2)−0.001 (3)
C150.060 (3)0.065 (3)0.048 (3)−0.036 (2)0.006 (2)0.009 (2)
C160.041 (2)0.041 (2)0.038 (2)−0.0194 (17)−0.0055 (16)0.0053 (16)
C170.054 (3)0.055 (3)0.041 (2)−0.025 (2)0.0030 (19)0.0045 (19)
C180.054 (3)0.057 (3)0.064 (3)−0.019 (2)−0.012 (2)0.009 (2)
C210.038 (2)0.040 (2)0.039 (2)−0.0150 (16)−0.0002 (16)0.0020 (16)
C220.051 (3)0.058 (3)0.052 (3)−0.020 (2)−0.016 (2)0.014 (2)
C230.034 (2)0.077 (3)0.083 (4)−0.024 (2)−0.004 (2)0.002 (3)
C240.047 (3)0.088 (4)0.061 (3)−0.037 (3)0.015 (2)0.004 (3)
C250.050 (3)0.065 (3)0.049 (3)−0.027 (2)−0.001 (2)0.014 (2)
C260.0350 (19)0.052 (2)0.041 (2)−0.0199 (17)0.0055 (16)−0.0010 (18)
C270.062 (3)0.058 (3)0.045 (2)−0.026 (2)0.015 (2)0.004 (2)
C280.042 (2)0.051 (2)0.051 (2)−0.0165 (18)−0.0068 (18)0.013 (2)
O1—C171.238 (6)C7—C81.385 (7)
O2—C171.257 (6)C7—H70.9300
O2—H3A1.37 (9)C8—C91.376 (8)
O3—C181.305 (7)C9—C101.403 (8)
O3—H3A1.07 (9)C9—H90.9300
O4—C181.210 (6)C10—H100.9300
O5—C271.206 (7)C11—C121.395 (6)
O6—C271.273 (7)C11—C161.420 (6)
O6—H7A1.03 (8)C11—C171.507 (6)
O7—C281.273 (6)C12—C131.383 (7)
O7—H7A1.37 (8)C12—H120.9300
O8—C281.218 (6)C13—C141.347 (8)
N1—C51.271 (9)C13—H130.9300
N1—C11.325 (9)C14—C151.385 (8)
N1—H1N0.86 (6)C14—H140.9300
N2—C61.282 (9)C15—C161.391 (6)
N2—C101.333 (9)C15—H150.9300
N2—H2N0.85 (6)C16—C181.513 (7)
N3—C81.403 (5)C21—C221.388 (6)
N3—C31.411 (5)C21—C261.404 (6)
N3—H3N0.92 (5)C21—C271.547 (6)
C1—C21.389 (9)C22—C231.391 (7)
C1—H10.9300C22—H220.9300
C2—C31.342 (8)C23—C241.382 (9)
C2—H20.9300C23—H230.9300
C3—C41.400 (7)C24—C251.355 (8)
C4—C51.361 (9)C24—H240.9300
C4—H40.9300C25—C261.394 (6)
C5—H50.9300C25—H250.9300
C6—C71.321 (9)C26—C281.527 (6)
C6—H60.9300
C17—O2—H3A114 (4)C13—C12—C11122.2 (4)
C18—O3—H3A110 (4)C13—C12—H12118.9
C27—O6—H7A109 (4)C11—C12—H12118.9
C28—O7—H7A109 (3)C14—C13—C12119.7 (5)
C5—N1—C1121.9 (5)C14—C13—H13120.2
C5—N1—H1N116 (5)C12—C13—H13120.2
C1—N1—H1N122 (5)C13—C14—C15120.4 (5)
C6—N2—C10122.0 (5)C13—C14—H14119.8
C6—N2—H2N120 (5)C15—C14—H14119.8
C10—N2—H2N118 (5)C14—C15—C16121.4 (5)
C8—N3—C3135.3 (4)C14—C15—H15119.3
C8—N3—H3N108 (4)C16—C15—H15119.3
C3—N3—H3N117 (4)C15—C16—C11118.6 (4)
N1—C1—C2119.9 (5)C15—C16—C18113.1 (4)
N1—C1—H1120.0C11—C16—C18128.3 (4)
C2—C1—H1120.0O1—C17—O2121.0 (5)
C3—C2—C1119.2 (5)O1—C17—C11118.5 (5)
C3—C2—H2120.4O2—C17—C11120.5 (4)
C1—C2—H2120.4O4—C18—O3120.8 (5)
C2—C3—C4118.6 (5)O4—C18—C16119.8 (5)
C2—C3—N3123.6 (5)O3—C18—C16119.3 (5)
C4—C3—N3117.8 (5)C22—C21—C26118.9 (4)
C5—C4—C3118.6 (5)C22—C21—C27112.6 (4)
C5—C4—H4120.7C26—C21—C27128.5 (4)
C3—C4—H4120.7C21—C22—C23121.3 (4)
N1—C5—C4121.8 (5)C21—C22—H22119.4
N1—C5—H5119.1C23—C22—H22119.4
C4—C5—H5119.1C24—C23—C22119.6 (5)
N2—C6—C7121.3 (5)C24—C23—H23120.2
N2—C6—H6119.4C22—C23—H23120.2
C7—C6—H6119.4C25—C24—C23118.9 (4)
C6—C7—C8121.1 (5)C25—C24—H24120.5
C6—C7—H7119.4C23—C24—H24120.5
C8—C7—H7119.4C24—C25—C26123.4 (4)
C9—C8—C7118.2 (4)C24—C25—H25118.3
C9—C8—N3123.2 (5)C26—C25—H25118.3
C7—C8—N3118.5 (5)C25—C26—C21117.8 (4)
C8—C9—C10117.3 (5)C25—C26—C28114.7 (4)
C8—C9—H9121.4C21—C26—C28127.5 (3)
C10—C9—H9121.4O5—C27—O6121.4 (5)
N2—C10—C9120.1 (5)O5—C27—C21119.0 (5)
N2—C10—H10119.9O6—C27—C21119.4 (4)
C9—C10—H10119.9O8—C28—O7122.3 (5)
C12—C11—C16117.7 (4)O8—C28—C26118.4 (4)
C12—C11—C17114.6 (4)O7—C28—C26119.3 (4)
C16—C11—C17127.7 (4)
C5—N1—C1—C21.5 (9)C12—C11—C16—C18177.2 (5)
N1—C1—C2—C3−0.6 (9)C17—C11—C16—C18−4.8 (8)
C1—C2—C3—C4−1.4 (8)C12—C11—C17—O1−10.2 (7)
C1—C2—C3—N3−178.7 (5)C16—C11—C17—O1171.7 (5)
C8—N3—C3—C23.8 (8)C12—C11—C17—O2169.0 (5)
C8—N3—C3—C4−173.6 (5)C16—C11—C17—O2−9.0 (8)
C2—C3—C4—C52.7 (9)C15—C16—C18—O417.3 (7)
N3—C3—C4—C5−179.9 (5)C11—C16—C18—O4−162.1 (5)
C1—N1—C5—C4−0.2 (10)C15—C16—C18—O3−159.4 (5)
C3—C4—C5—N1−1.9 (10)C11—C16—C18—O321.3 (8)
C10—N2—C6—C70.1 (10)C26—C21—C22—C23−2.2 (8)
N2—C6—C7—C80.5 (9)C27—C21—C22—C23177.6 (5)
C6—C7—C8—C9−0.4 (8)C21—C22—C23—C241.9 (9)
C6—C7—C8—N3178.0 (5)C22—C23—C24—C25−1.3 (10)
C3—N3—C8—C91.6 (8)C23—C24—C25—C261.2 (10)
C3—N3—C8—C7−176.7 (5)C24—C25—C26—C21−1.4 (8)
C7—C8—C9—C10−0.3 (8)C24—C25—C26—C28178.6 (5)
N3—C8—C9—C10−178.6 (5)C22—C21—C26—C251.9 (7)
C6—N2—C10—C9−0.8 (9)C27—C21—C26—C25−177.9 (5)
C8—C9—C10—N20.9 (9)C22—C21—C26—C28−178.1 (5)
C16—C11—C12—C131.7 (7)C27—C21—C26—C282.1 (8)
C17—C11—C12—C13−176.5 (5)C22—C21—C27—O56.8 (7)
C11—C12—C13—C140.6 (9)C26—C21—C27—O5−173.4 (6)
C12—C13—C14—C15−2.4 (9)C22—C21—C27—O6−168.9 (5)
C13—C14—C15—C161.9 (9)C26—C21—C27—O610.9 (8)
C14—C15—C16—C110.4 (7)C25—C26—C28—O8−20.4 (7)
C14—C15—C16—C18−179.0 (5)C21—C26—C28—O8159.6 (5)
C12—C11—C16—C15−2.2 (6)C25—C26—C28—O7158.8 (5)
C17—C11—C16—C15175.9 (5)C21—C26—C28—O7−21.2 (8)
D—H···AD—HH···AD···AD—H···A
O3—H3A···O21.07 (9)1.37 (9)2.386 (6)155 (7)
O6—H7A···O71.03 (8)1.37 (8)2.396 (6)172 (7)
N1—H1N···O10.86 (6)1.90 (6)2.757 (6)177 (7)
N2—H2N···O60.85 (6)2.00 (6)2.834 (5)167 (7)
N3—H3N···O8i0.92 (5)1.88 (5)2.794 (5)172 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3A⋯O21.07 (9)1.37 (9)2.386 (6)155 (7)
O6—H7A⋯O71.03 (8)1.37 (8)2.396 (6)172 (7)
N1—H1N⋯O10.86 (6)1.90 (6)2.757 (6)177 (7)
N2—H2N⋯O60.85 (6)2.00 (6)2.834 (5)167 (7)
N3—H3N⋯O8i0.92 (5)1.88 (5)2.794 (5)172 (5)

Symmetry code: (i) .

  4 in total

1.  The hydrogen bond in the solid state.

Authors:  Thomas Steiner
Journal:  Angew Chem Int Ed Engl       Date:  2002-01-04       Impact factor: 15.336

2.  Ferroelectricity near room temperature in co-crystals of nonpolar organic molecules.

Authors:  Sachio Horiuchi; Fumiyuki Ishii; Reiji Kumai; Yoichi Okimoto; Hiroaki Tachibana; Naoto Nagaosa; Yoshinori Tokura
Journal:  Nat Mater       Date:  2005-01-23       Impact factor: 43.841

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Helices versus zigzag chains: one-dimensional coordination polymers of Ag(I) and Bis(4-pyridyl)amine.

Authors:  David B Cordes; Lyall R Hanton; Mark D Spicer
Journal:  Inorg Chem       Date:  2006-09-18       Impact factor: 5.165

  4 in total

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