| Literature DB >> 21580996 |
Zhi-Qiang Shi, Ning-Ning Ji, Xiao-Yan Li.
Abstract
In the title compound, C(13)H(9)ClN(4)O(4), there are two crystallographically independent mol-ecules in the asymmetric unit, which have very similar conformations. The C=N-N angles in each independent mol-ecule are 115.0 (2) and 116.6 (2)°, which are significantly smaller than the ideal value of 120° expected for sp(2)-hybridized N atoms. This is probably a consequence of repulsion between the nitro-gen lone pairs and the adjacent N-N bonds. Two bifurcated intra-molecular N-H⋯O hydrogen bonds help to establish the mol-ecular conformation and consolidate the crystal packing.Entities:
Year: 2008 PMID: 21580996 PMCID: PMC2959777 DOI: 10.1107/S1600536808033357
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H9ClN4O4 | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 1793 reflections | |
| θ = 2.7–24.9° | |
| µ = 0.31 mm−1 | |
| α = 95.691 (2)° | |
| β = 93.030 (2)° | Block, yellow |
| γ = 99.728 (3)° | 0.15 × 0.12 × 0.08 mm |
| Bruker APEXII CCD area-detector diffractometer | 4776 independent reflections |
| Radiation source: fine-focus sealed tube | 3273 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.0°, θmin = 2.5° |
| Absorption correction: multi-scan (SADABS; Bruker, 2005) | |
| 7216 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 4776 reflections | (Δ/σ)max = 0.001 |
| 397 parameters | Δρmax = 0.42 e Å−3 |
| 0 restraints | Δρmin = −0.36 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.32732 (10) | 0.39535 (11) | 0.21587 (3) | 0.0647 (2) | |
| Cl2 | 0.43812 (11) | 0.46461 (12) | 0.65151 (3) | 0.0739 (3) | |
| O1 | 1.1413 (3) | 0.8066 (3) | 0.24502 (8) | 0.0769 (6) | |
| O2 | 1.4364 (3) | 0.8957 (4) | 0.23973 (8) | 0.0901 (8) | |
| O3 | 1.6810 (3) | 1.1413 (4) | 0.08840 (11) | 0.1047 (9) | |
| O4 | 1.4958 (3) | 1.1774 (3) | 0.02231 (9) | 0.0754 (6) | |
| O5 | −0.0518 (4) | −0.1695 (3) | 0.37193 (10) | 0.0957 (8) | |
| O6 | 0.0550 (3) | −0.0357 (3) | 0.44708 (4) | 0.0817 (7) | |
| O7 | −0.1612 (4) | 0.1254 (4) | 0.22106 (9) | 0.0899 (8) | |
| O8 | −0.1463 (3) | 0.4102 (3) | 0.23032 (8) | 0.0804 (7) | |
| N1 | 0.7500 (3) | 0.6855 (3) | 0.12714 (8) | 0.0490 (5) | |
| N2 | 0.9138 (3) | 0.7485 (3) | 0.15793 (8) | 0.0506 (6) | |
| H2 | 0.9218 | 0.7309 | 0.1912 | 0.061* | |
| N3 | 1.2749 (4) | 0.8647 (3) | 0.21971 (9) | 0.0586 (6) | |
| N4 | 1.5265 (4) | 1.1204 (3) | 0.06490 (11) | 0.0626 (7) | |
| N5 | 0.2250 (3) | 0.4769 (3) | 0.48803 (9) | 0.0544 (6) | |
| N6 | 0.1464 (3) | 0.3138 (3) | 0.46212 (8) | 0.0555 (6) | |
| H6 | 0.1359 | 0.2206 | 0.4790 | 0.067* | |
| N7 | 0.0038 (3) | −0.0334 (3) | 0.40054 (10) | 0.0584 (6) | |
| N8 | −0.1249 (3) | 0.2712 (4) | 0.24773 (9) | 0.0613 (6) | |
| C1 | 0.2909 (3) | 0.4329 (3) | 0.14910 (10) | 0.0440 (6) | |
| C2 | 0.4356 (3) | 0.5294 (3) | 0.12368 (10) | 0.0428 (6) | |
| C3 | 0.3991 (4) | 0.5523 (4) | 0.07027 (10) | 0.0508 (7) | |
| H3 | 0.4928 | 0.6154 | 0.0522 | 0.061* | |
| C4 | 0.2273 (4) | 0.4835 (4) | 0.04363 (11) | 0.0565 (7) | |
| H4 | 0.2058 | 0.5001 | 0.0078 | 0.068* | |
| C5 | 0.0867 (4) | 0.3899 (4) | 0.06992 (11) | 0.0558 (7) | |
| H5 | −0.0295 | 0.3438 | 0.0518 | 0.067* | |
| C6 | 0.1179 (4) | 0.3646 (3) | 0.12285 (11) | 0.0506 (7) | |
| H6A | 0.0232 | 0.3020 | 0.1407 | 0.061* | |
| C7 | 0.6178 (3) | 0.6038 (3) | 0.15160 (10) | 0.0470 (6) | |
| H7 | 0.6378 | 0.5915 | 0.1878 | 0.056* | |
| C8 | 1.0634 (3) | 0.8386 (3) | 0.13611 (10) | 0.0436 (6) | |
| C9 | 1.2406 (3) | 0.8962 (3) | 0.16462 (10) | 0.0450 (6) | |
| C10 | 1.3931 (3) | 0.9855 (3) | 0.14090 (10) | 0.0466 (6) | |
| H10 | 1.5096 | 1.0204 | 0.1599 | 0.056* | |
| C11 | 1.3680 (4) | 1.0207 (3) | 0.08927 (10) | 0.0479 (6) | |
| C12 | 1.1976 (4) | 0.9667 (4) | 0.05948 (11) | 0.0522 (7) | |
| H12 | 1.1849 | 0.9913 | 0.0241 | 0.063* | |
| C13 | 1.0483 (4) | 0.8770 (3) | 0.08255 (10) | 0.0501 (7) | |
| H13 | 0.9341 | 0.8404 | 0.0625 | 0.060* | |
| C14 | 0.4405 (4) | 0.6574 (4) | 0.62064 (11) | 0.0555 (7) | |
| C15 | 0.3642 (4) | 0.6497 (4) | 0.56796 (10) | 0.0517 (7) | |
| C16 | 0.3711 (4) | 0.8103 (4) | 0.54624 (12) | 0.0626 (8) | |
| H16 | 0.3214 | 0.8099 | 0.5113 | 0.075* | |
| C17 | 0.4496 (4) | 0.9698 (5) | 0.57508 (13) | 0.0700 (9) | |
| H17 | 0.4537 | 1.0755 | 0.5595 | 0.084* | |
| C18 | 0.5230 (4) | 0.9733 (5) | 0.62741 (13) | 0.0713 (9) | |
| H18 | 0.5753 | 1.0813 | 0.6471 | 0.086* | |
| C19 | 0.5181 (4) | 0.8170 (5) | 0.65008 (12) | 0.0664 (8) | |
| H19 | 0.5669 | 0.8187 | 0.6851 | 0.080* | |
| C20 | 0.2786 (4) | 0.4815 (4) | 0.53736 (10) | 0.0548 (7) | |
| H20 | 0.2629 | 0.3771 | 0.5539 | 0.066* | |
| C21 | 0.0852 (3) | 0.2998 (4) | 0.40979 (10) | 0.0451 (6) | |
| C22 | 0.0134 (3) | 0.1353 (3) | 0.37897 (10) | 0.0461 (6) | |
| C23 | −0.0515 (3) | 0.1268 (4) | 0.32600 (10) | 0.0482 (6) | |
| H23 | −0.0975 | 0.0172 | 0.3064 | 0.058* | |
| C24 | −0.0474 (3) | 0.2805 (4) | 0.30277 (9) | 0.0462 (6) | |
| C25 | 0.0247 (4) | 0.4448 (4) | 0.33107 (10) | 0.0512 (7) | |
| H25 | 0.0282 | 0.5484 | 0.3145 | 0.061* | |
| C26 | 0.0902 (4) | 0.4542 (4) | 0.38328 (10) | 0.0513 (7) | |
| H26 | 0.1394 | 0.5649 | 0.4018 | 0.062* |
| Cl1 | 0.0580 (4) | 0.0837 (5) | 0.0489 (4) | −0.0052 (4) | 0.0051 (3) | 0.0196 (4) |
| Cl2 | 0.0731 (5) | 0.0892 (6) | 0.0596 (5) | 0.0129 (4) | −0.0076 (4) | 0.0178 (4) |
| O1 | 0.0683 (14) | 0.1072 (18) | 0.0515 (12) | −0.0034 (13) | 0.0101 (10) | 0.0190 (12) |
| O2 | 0.0658 (15) | 0.131 (2) | 0.0598 (13) | −0.0178 (14) | −0.0154 (11) | 0.0137 (13) |
| O3 | 0.0540 (14) | 0.142 (2) | 0.1053 (19) | −0.0302 (15) | 0.0087 (14) | 0.0299 (17) |
| O4 | 0.0938 (17) | 0.0597 (13) | 0.0773 (15) | 0.0076 (12) | 0.0342 (12) | 0.0249 (12) |
| O5 | 0.158 (3) | 0.0482 (13) | 0.0751 (16) | 0.0065 (15) | −0.0070 (15) | 0.0038 (12) |
| O6 | 0.123 (2) | 0.0665 (14) | 0.0573 (13) | 0.0157 (13) | −0.0011 (13) | 0.0240 (11) |
| O7 | 0.110 (2) | 0.0898 (18) | 0.0566 (13) | −0.0106 (15) | −0.0197 (13) | 0.0052 (13) |
| O8 | 0.0857 (16) | 0.1023 (18) | 0.0622 (13) | 0.0302 (14) | −0.0007 (11) | 0.0327 (13) |
| N1 | 0.0405 (12) | 0.0503 (13) | 0.0541 (13) | 0.0000 (10) | 0.0056 (10) | 0.0075 (11) |
| N2 | 0.0407 (12) | 0.0596 (14) | 0.0483 (12) | −0.0026 (11) | 0.0055 (10) | 0.0087 (11) |
| N3 | 0.0588 (15) | 0.0641 (16) | 0.0468 (13) | −0.0031 (13) | 0.0014 (12) | 0.0015 (11) |
| N4 | 0.0632 (17) | 0.0517 (15) | 0.0701 (17) | −0.0032 (13) | 0.0235 (14) | 0.0057 (13) |
| N5 | 0.0539 (14) | 0.0647 (16) | 0.0447 (13) | 0.0106 (12) | 0.0054 (11) | 0.0056 (12) |
| N6 | 0.0634 (15) | 0.0572 (15) | 0.0458 (13) | 0.0082 (12) | 0.0013 (11) | 0.0114 (11) |
| N7 | 0.0695 (16) | 0.0589 (16) | 0.0513 (15) | 0.0147 (13) | 0.0099 (12) | 0.0185 (13) |
| N8 | 0.0507 (14) | 0.086 (2) | 0.0468 (14) | 0.0045 (14) | 0.0041 (11) | 0.0180 (15) |
| C1 | 0.0436 (14) | 0.0430 (14) | 0.0459 (14) | 0.0060 (12) | 0.0066 (11) | 0.0081 (12) |
| C2 | 0.0395 (14) | 0.0403 (14) | 0.0508 (15) | 0.0089 (11) | 0.0069 (11) | 0.0109 (12) |
| C3 | 0.0467 (15) | 0.0534 (16) | 0.0559 (16) | 0.0097 (13) | 0.0110 (13) | 0.0187 (13) |
| C4 | 0.0537 (17) | 0.0669 (19) | 0.0502 (16) | 0.0106 (15) | −0.0001 (13) | 0.0155 (14) |
| C5 | 0.0441 (15) | 0.0583 (18) | 0.0625 (18) | 0.0037 (13) | −0.0058 (13) | 0.0088 (14) |
| C6 | 0.0418 (15) | 0.0514 (16) | 0.0577 (17) | 0.0015 (13) | 0.0051 (12) | 0.0120 (13) |
| C7 | 0.0423 (14) | 0.0480 (16) | 0.0512 (15) | 0.0060 (12) | 0.0058 (12) | 0.0093 (13) |
| C8 | 0.0425 (14) | 0.0393 (14) | 0.0478 (15) | 0.0030 (12) | 0.0095 (11) | 0.0026 (11) |
| C9 | 0.0478 (15) | 0.0415 (14) | 0.0425 (14) | 0.0007 (12) | 0.0047 (12) | 0.0006 (11) |
| C10 | 0.0399 (14) | 0.0411 (15) | 0.0544 (16) | −0.0018 (12) | 0.0038 (12) | −0.0015 (12) |
| C11 | 0.0480 (16) | 0.0392 (14) | 0.0545 (16) | −0.0011 (12) | 0.0132 (13) | 0.0049 (12) |
| C12 | 0.0544 (17) | 0.0531 (17) | 0.0491 (15) | 0.0055 (14) | 0.0079 (13) | 0.0095 (13) |
| C13 | 0.0446 (15) | 0.0510 (16) | 0.0519 (16) | 0.0013 (13) | 0.0005 (12) | 0.0058 (13) |
| C14 | 0.0407 (15) | 0.075 (2) | 0.0496 (16) | 0.0070 (14) | 0.0036 (12) | 0.0078 (15) |
| C15 | 0.0413 (15) | 0.0687 (19) | 0.0446 (15) | 0.0058 (14) | 0.0084 (12) | 0.0073 (14) |
| C16 | 0.0589 (18) | 0.077 (2) | 0.0512 (17) | 0.0058 (16) | 0.0117 (14) | 0.0091 (16) |
| C17 | 0.067 (2) | 0.069 (2) | 0.075 (2) | 0.0072 (17) | 0.0198 (17) | 0.0153 (18) |
| C18 | 0.0606 (19) | 0.078 (2) | 0.070 (2) | 0.0016 (17) | 0.0130 (16) | −0.0064 (18) |
| C19 | 0.0544 (18) | 0.089 (2) | 0.0519 (17) | 0.0091 (17) | 0.0009 (14) | −0.0013 (18) |
| C20 | 0.0517 (16) | 0.069 (2) | 0.0442 (16) | 0.0088 (15) | 0.0039 (13) | 0.0126 (14) |
| C21 | 0.0395 (14) | 0.0584 (17) | 0.0399 (14) | 0.0102 (13) | 0.0087 (11) | 0.0115 (13) |
| C22 | 0.0455 (15) | 0.0498 (16) | 0.0459 (15) | 0.0095 (13) | 0.0096 (12) | 0.0142 (13) |
| C23 | 0.0443 (15) | 0.0559 (17) | 0.0440 (15) | 0.0046 (13) | 0.0080 (11) | 0.0074 (13) |
| C24 | 0.0393 (14) | 0.0624 (18) | 0.0375 (14) | 0.0067 (13) | 0.0046 (11) | 0.0108 (13) |
| C25 | 0.0495 (16) | 0.0574 (18) | 0.0499 (16) | 0.0083 (14) | 0.0100 (12) | 0.0202 (14) |
| C26 | 0.0513 (16) | 0.0526 (16) | 0.0499 (16) | 0.0066 (13) | 0.0063 (12) | 0.0082 (13) |
| Cl1—C1 | 1.745 (2) | C5—H5 | 0.9300 |
| Cl2—C14 | 1.733 (3) | C6—H6A | 0.9300 |
| O1—N3 | 1.229 (3) | C7—H7 | 0.9300 |
| O2—N3 | 1.222 (3) | C8—C13 | 1.409 (3) |
| O3—N4 | 1.214 (3) | C8—C9 | 1.413 (3) |
| O4—N4 | 1.220 (3) | C9—C10 | 1.391 (3) |
| O5—N7 | 1.202 (3) | C10—C11 | 1.361 (3) |
| O6—N7 | 1.211 (3) | C10—H10 | 0.9300 |
| O7—N8 | 1.224 (3) | C11—C12 | 1.385 (4) |
| O8—N8 | 1.221 (3) | C12—C13 | 1.367 (3) |
| N1—C7 | 1.272 (3) | C12—H12 | 0.9300 |
| N1—N2 | 1.368 (3) | C13—H13 | 0.9300 |
| N2—C8 | 1.354 (3) | C14—C19 | 1.379 (4) |
| N2—H2 | 0.8600 | C14—C15 | 1.399 (4) |
| N3—O1 | 1.229 (3) | C15—C16 | 1.389 (4) |
| N3—C9 | 1.445 (3) | C15—C20 | 1.456 (4) |
| N4—C11 | 1.464 (3) | C16—C17 | 1.374 (4) |
| N5—C20 | 1.275 (3) | C16—H16 | 0.9300 |
| N5—N6 | 1.367 (3) | C17—C18 | 1.389 (4) |
| N6—C21 | 1.354 (3) | C17—H17 | 0.9300 |
| N6—H6 | 0.8600 | C18—C19 | 1.372 (4) |
| N7—O6 | 1.211 (3) | C18—H18 | 0.9300 |
| N7—C22 | 1.443 (3) | C19—H19 | 0.9300 |
| N8—C24 | 1.456 (3) | C20—H20 | 0.9300 |
| C1—C6 | 1.377 (3) | C21—C26 | 1.410 (4) |
| C1—C2 | 1.396 (3) | C21—C22 | 1.414 (4) |
| C2—C3 | 1.389 (3) | C22—C23 | 1.380 (3) |
| C2—C7 | 1.457 (3) | C23—C24 | 1.362 (4) |
| C3—C4 | 1.375 (4) | C23—H23 | 0.9300 |
| C3—H3 | 0.9300 | C24—C25 | 1.386 (4) |
| C4—C5 | 1.379 (4) | C25—C26 | 1.363 (4) |
| C4—H4 | 0.9300 | C25—H25 | 0.9300 |
| C5—C6 | 1.376 (4) | C26—H26 | 0.9300 |
| C7—N1—N2 | 115.0 (2) | C11—C10—C9 | 118.5 (2) |
| C8—N2—N1 | 120.0 (2) | C11—C10—H10 | 120.7 |
| C8—N2—H2 | 120.0 | C9—C10—H10 | 120.7 |
| N1—N2—H2 | 120.0 | C10—C11—C12 | 122.1 (2) |
| O2—N3—O1 | 121.8 (2) | C10—C11—N4 | 118.6 (2) |
| O2—N3—O1 | 121.8 (2) | C12—C11—N4 | 119.3 (2) |
| O2—N3—C9 | 118.9 (2) | C13—C12—C11 | 119.4 (2) |
| O1—N3—C9 | 119.2 (2) | C13—C12—H12 | 120.3 |
| O1—N3—C9 | 119.2 (2) | C11—C12—H12 | 120.3 |
| O3—N4—O4 | 123.9 (3) | C12—C13—C8 | 121.5 (2) |
| O3—N4—C11 | 117.9 (3) | C12—C13—H13 | 119.3 |
| O4—N4—C11 | 118.2 (3) | C8—C13—H13 | 119.3 |
| C20—N5—N6 | 116.6 (2) | C19—C14—C15 | 121.8 (3) |
| C21—N6—N5 | 119.6 (2) | C19—C14—Cl2 | 117.5 (2) |
| C21—N6—H6 | 120.2 | C15—C14—Cl2 | 120.7 (2) |
| N5—N6—H6 | 120.2 | C16—C15—C14 | 117.1 (3) |
| O5—N7—O6 | 120.9 (2) | C16—C15—C20 | 121.2 (3) |
| O5—N7—O6 | 120.9 (2) | C14—C15—C20 | 121.7 (3) |
| O5—N7—C22 | 119.6 (2) | C17—C16—C15 | 121.6 (3) |
| O6—N7—C22 | 119.4 (3) | C17—C16—H16 | 119.2 |
| O6—N7—C22 | 119.4 (3) | C15—C16—H16 | 119.2 |
| O8—N8—O7 | 123.5 (3) | C16—C17—C18 | 120.0 (3) |
| O8—N8—C24 | 118.0 (3) | C16—C17—H17 | 120.0 |
| O7—N8—C24 | 118.5 (3) | C18—C17—H17 | 120.0 |
| C6—C1—C2 | 121.8 (2) | C19—C18—C17 | 119.8 (3) |
| C6—C1—Cl1 | 118.19 (19) | C19—C18—H18 | 120.1 |
| C2—C1—Cl1 | 119.98 (19) | C17—C18—H18 | 120.1 |
| C3—C2—C1 | 117.3 (2) | C18—C19—C14 | 119.7 (3) |
| C3—C2—C7 | 120.8 (2) | C18—C19—H19 | 120.2 |
| C1—C2—C7 | 121.9 (2) | C14—C19—H19 | 120.2 |
| C4—C3—C2 | 121.3 (2) | N5—C20—C15 | 120.2 (3) |
| C4—C3—H3 | 119.4 | N5—C20—H20 | 119.9 |
| C2—C3—H3 | 119.4 | C15—C20—H20 | 119.9 |
| C3—C4—C5 | 120.1 (3) | N6—C21—C26 | 120.1 (3) |
| C3—C4—H4 | 120.0 | N6—C21—C22 | 123.4 (2) |
| C5—C4—H4 | 120.0 | C26—C21—C22 | 116.5 (2) |
| C6—C5—C4 | 120.2 (3) | C23—C22—C21 | 121.7 (2) |
| C6—C5—H5 | 119.9 | C23—C22—N7 | 115.8 (2) |
| C4—C5—H5 | 119.9 | C21—C22—N7 | 122.5 (2) |
| C1—C6—C5 | 119.3 (2) | C24—C23—C22 | 119.3 (3) |
| C1—C6—H6A | 120.3 | C24—C23—H23 | 120.4 |
| C5—C6—H6A | 120.3 | C22—C23—H23 | 120.4 |
| N1—C7—C2 | 120.9 (2) | C23—C24—C25 | 121.1 (2) |
| N1—C7—H7 | 119.6 | C23—C24—N8 | 119.0 (3) |
| C2—C7—H7 | 119.6 | C25—C24—N8 | 119.8 (2) |
| N2—C8—C13 | 120.4 (2) | C26—C25—C24 | 119.9 (2) |
| N2—C8—C9 | 122.8 (2) | C26—C25—H25 | 120.0 |
| C13—C8—C9 | 116.8 (2) | C24—C25—H25 | 120.0 |
| C10—C9—C8 | 121.7 (2) | C25—C26—C21 | 121.4 (3) |
| C10—C9—N3 | 116.1 (2) | C25—C26—H26 | 119.3 |
| C8—C9—N3 | 122.3 (2) | C21—C26—H26 | 119.3 |
| H··· | ||||
| N6—H6···O6 | 0.86 | 2.02 | 2.631 (3) | 127 |
| N2—H2···O1 | 0.86 | 2.00 | 2.622 (3) | 129 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N6—H6⋯O6 | 0.86 | 2.02 | 2.631 (3) | 127 |
| N2—H2⋯O1 | 0.86 | 2.00 | 2.622 (3) | 129 |