| Literature DB >> 21580973 |
Yu-Zhen Chen, Han Gao, Gang Li, Xiao-Jing Chen, Sheng-Yang Niu.
Abstract
The title compound, C(11)H(9)N(3)O(4)S·H(2)O, contains both an acid and a base centre, and displays a zwitterionic structure in the solid state. The benzene ring makes an angle of 109.1 (2)° with the pyridinium ring. The crystal structure is stabilized by O-H⋯N, O-H⋯O and N-H⋯O hydrogen bonds.Entities:
Year: 2008 PMID: 21580973 PMCID: PMC2959784 DOI: 10.1107/S1600536808032273
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C11H9N3O4S·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 3340 reflections |
| θ = 1.9–27.9° | |
| µ = 0.29 mm−1 | |
| β = 92.35 (3)° | Block, colourless |
| 0.20 × 0.18 × 0.12 mm | |
| Rigaku Saturn CCD area-detector diffractometer | 2908 independent reflections |
| Radiation source: rotating anode | 2022 reflections with |
| confocal | |
| Detector resolution: 7.31 pixels mm-1 | θmax = 27.9°, θmin = 1.9° |
| ω and φ scans | |
| Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2005) | |
| 9708 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2908 reflections | (Δ/σ)max = 0.002 |
| 193 parameters | Δρmax = 0.35 e Å−3 |
| 0 restraints | Δρmin = −0.45 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.89206 (11) | 0.18818 (8) | 0.12547 (3) | 0.01574 (18) | |
| N1 | 0.7145 (4) | 0.7176 (3) | 0.00969 (13) | 0.0228 (6) | |
| H1A | 0.707 (6) | 0.823 (5) | −0.0019 (19) | 0.048 (12)* | |
| N2 | 0.8061 (4) | 0.2477 (3) | 0.06005 (11) | 0.0166 (5) | |
| N3 | 0.2350 (4) | 0.1341 (3) | 0.29976 (12) | 0.0236 (6) | |
| O1 | 1.0378 (3) | 0.2937 (2) | 0.15368 (9) | 0.0197 (5) | |
| O2 | 0.9523 (3) | 0.0240 (2) | 0.11577 (10) | 0.0208 (5) | |
| O3 | 0.2477 (4) | 0.2106 (3) | 0.34777 (10) | 0.0332 (6) | |
| O4 | 0.0934 (4) | 0.0497 (3) | 0.28506 (13) | 0.0401 (7) | |
| C1 | 0.7738 (4) | 0.4058 (3) | 0.04742 (13) | 0.0151 (6) | |
| C2 | 0.7618 (5) | 0.5312 (3) | 0.09068 (14) | 0.0203 (6) | |
| H2 | 0.7736 | 0.5099 | 0.1336 | 0.024* | |
| C3 | 0.7329 (5) | 0.6835 (4) | 0.06978 (16) | 0.0259 (7) | |
| H3 | 0.7257 | 0.7677 | 0.0989 | 0.031* | |
| C4 | 0.7199 (5) | 0.6006 (4) | −0.03300 (14) | 0.0204 (6) | |
| H4 | 0.7053 | 0.6265 | −0.0755 | 0.024* | |
| C5 | 0.7463 (4) | 0.4454 (3) | −0.01543 (14) | 0.0176 (6) | |
| H5 | 0.7462 | 0.3638 | −0.0458 | 0.021* | |
| C6 | 0.6953 (4) | 0.1762 (3) | 0.17671 (13) | 0.0150 (6) | |
| C7 | 0.5306 (5) | 0.0811 (3) | 0.16067 (13) | 0.0182 (6) | |
| H7 | 0.5230 | 0.0275 | 0.1221 | 0.022* | |
| C8 | 0.3798 (5) | 0.0659 (3) | 0.20114 (14) | 0.0180 (6) | |
| H8 | 0.2678 | 0.0013 | 0.1912 | 0.022* | |
| C9 | 0.3961 (4) | 0.1475 (3) | 0.25685 (13) | 0.0171 (6) | |
| C10 | 0.5550 (5) | 0.2447 (3) | 0.27298 (14) | 0.0199 (6) | |
| H10 | 0.5598 | 0.3011 | 0.3109 | 0.024* | |
| C11 | 0.7072 (5) | 0.2580 (3) | 0.23239 (13) | 0.0189 (6) | |
| H11 | 0.8189 | 0.3226 | 0.2426 | 0.023* | |
| O5 | 0.7268 (4) | 0.0224 (2) | −0.03361 (11) | 0.0216 (5) | |
| H5A | 0.763 (6) | 0.079 (5) | −0.003 (2) | 0.046 (13)* | |
| H5B | 0.815 (7) | 0.027 (5) | −0.060 (2) | 0.049 (14)* |
| S1 | 0.0176 (4) | 0.0143 (3) | 0.0154 (3) | 0.0017 (3) | 0.0016 (3) | 0.0006 (3) |
| N1 | 0.0216 (15) | 0.0139 (11) | 0.0326 (15) | −0.0023 (10) | −0.0021 (12) | 0.0047 (11) |
| N2 | 0.0213 (14) | 0.0133 (11) | 0.0152 (11) | 0.0014 (10) | 0.0005 (10) | 0.0005 (9) |
| N3 | 0.0253 (15) | 0.0227 (13) | 0.0231 (14) | 0.0026 (11) | 0.0061 (12) | 0.0037 (11) |
| O1 | 0.0175 (11) | 0.0213 (10) | 0.0203 (11) | −0.0013 (9) | −0.0007 (8) | −0.0004 (9) |
| O2 | 0.0254 (12) | 0.0151 (10) | 0.0222 (11) | 0.0054 (8) | 0.0056 (9) | 0.0025 (8) |
| O3 | 0.0445 (16) | 0.0358 (13) | 0.0202 (11) | −0.0024 (11) | 0.0134 (11) | −0.0026 (10) |
| O4 | 0.0294 (15) | 0.0468 (15) | 0.0452 (16) | −0.0171 (12) | 0.0146 (13) | −0.0081 (13) |
| C1 | 0.0116 (15) | 0.0138 (12) | 0.0201 (14) | −0.0010 (10) | 0.0029 (12) | 0.0012 (11) |
| C2 | 0.0251 (17) | 0.0172 (13) | 0.0184 (14) | 0.0024 (12) | −0.0027 (13) | −0.0017 (12) |
| C3 | 0.0309 (19) | 0.0169 (14) | 0.0292 (17) | 0.0010 (13) | −0.0068 (14) | −0.0050 (13) |
| C4 | 0.0158 (16) | 0.0244 (14) | 0.0211 (15) | 0.0013 (12) | 0.0026 (12) | 0.0048 (12) |
| C5 | 0.0135 (15) | 0.0199 (13) | 0.0196 (14) | 0.0005 (11) | 0.0037 (12) | −0.0003 (12) |
| C6 | 0.0155 (15) | 0.0147 (12) | 0.0148 (13) | 0.0028 (11) | 0.0008 (11) | 0.0019 (11) |
| C7 | 0.0204 (16) | 0.0189 (13) | 0.0150 (13) | 0.0013 (12) | −0.0024 (12) | −0.0021 (11) |
| C8 | 0.0164 (16) | 0.0166 (13) | 0.0207 (14) | 0.0005 (11) | −0.0012 (12) | −0.0003 (12) |
| C9 | 0.0180 (15) | 0.0170 (13) | 0.0165 (14) | 0.0022 (11) | 0.0033 (12) | 0.0033 (11) |
| C10 | 0.0241 (17) | 0.0205 (13) | 0.0151 (13) | 0.0021 (12) | 0.0000 (12) | −0.0035 (12) |
| C11 | 0.0221 (16) | 0.0190 (13) | 0.0156 (13) | −0.0026 (12) | −0.0008 (12) | −0.0012 (11) |
| O5 | 0.0292 (14) | 0.0158 (10) | 0.0199 (11) | −0.0026 (9) | 0.0037 (10) | −0.0011 (9) |
| S1—O1 | 1.444 (2) | C4—C5 | 1.367 (4) |
| S1—O2 | 1.455 (2) | C4—H4 | 0.9500 |
| S1—N2 | 1.594 (2) | C5—H5 | 0.9500 |
| S1—C6 | 1.774 (3) | C6—C11 | 1.390 (4) |
| N1—C3 | 1.337 (4) | C6—C7 | 1.404 (4) |
| N1—C4 | 1.352 (4) | C7—C8 | 1.381 (4) |
| N1—H1A | 0.92 (4) | C7—H7 | 0.9500 |
| N2—C1 | 1.370 (3) | C8—C9 | 1.391 (4) |
| N3—O4 | 1.224 (4) | C8—H8 | 0.9500 |
| N3—O3 | 1.225 (3) | C9—C10 | 1.385 (4) |
| N3—C9 | 1.468 (4) | C10—C11 | 1.388 (4) |
| C1—C5 | 1.410 (4) | C10—H10 | 0.9500 |
| C1—C2 | 1.416 (4) | C11—H11 | 0.9500 |
| C2—C3 | 1.368 (4) | O5—H5A | 0.85 (4) |
| C2—H2 | 0.9500 | O5—H5B | 0.85 (5) |
| C3—H3 | 0.9500 | ||
| O1—S1—O2 | 116.81 (13) | C5—C4—H4 | 119.8 |
| O1—S1—N2 | 113.86 (13) | C4—C5—C1 | 120.4 (3) |
| O2—S1—N2 | 105.21 (12) | C4—C5—H5 | 119.8 |
| O1—S1—C6 | 106.69 (13) | C1—C5—H5 | 119.8 |
| O2—S1—C6 | 105.05 (13) | C11—C6—C7 | 120.9 (3) |
| N2—S1—C6 | 108.69 (13) | C11—C6—S1 | 120.0 (2) |
| C3—N1—C4 | 120.7 (3) | C7—C6—S1 | 119.1 (2) |
| C3—N1—H1A | 118 (3) | C8—C7—C6 | 119.8 (3) |
| C4—N1—H1A | 121 (3) | C8—C7—H7 | 120.1 |
| C1—N2—S1 | 122.1 (2) | C6—C7—H7 | 120.1 |
| O4—N3—O3 | 123.5 (3) | C7—C8—C9 | 118.2 (3) |
| O4—N3—C9 | 118.3 (3) | C7—C8—H8 | 120.9 |
| O3—N3—C9 | 118.2 (3) | C9—C8—H8 | 120.9 |
| N2—C1—C5 | 115.9 (2) | C10—C9—C8 | 122.9 (3) |
| N2—C1—C2 | 126.9 (3) | C10—C9—N3 | 118.4 (3) |
| C5—C1—C2 | 117.2 (3) | C8—C9—N3 | 118.7 (3) |
| C3—C2—C1 | 119.1 (3) | C9—C10—C11 | 118.5 (3) |
| C3—C2—H2 | 120.5 | C9—C10—H10 | 120.8 |
| C1—C2—H2 | 120.5 | C11—C10—H10 | 120.8 |
| N1—C3—C2 | 122.0 (3) | C10—C11—C6 | 119.6 (3) |
| N1—C3—H3 | 119.0 | C10—C11—H11 | 120.2 |
| C2—C3—H3 | 119.0 | C6—C11—H11 | 120.2 |
| N1—C4—C5 | 120.5 (3) | H5A—O5—H5B | 109 (4) |
| N1—C4—H4 | 119.8 | ||
| O1—S1—N2—C1 | −36.5 (3) | O2—S1—C6—C7 | −55.7 (3) |
| O2—S1—N2—C1 | −165.6 (2) | N2—S1—C6—C7 | 56.5 (3) |
| C6—S1—N2—C1 | 82.3 (3) | C11—C6—C7—C8 | −1.3 (4) |
| S1—N2—C1—C5 | 164.4 (2) | S1—C6—C7—C8 | 177.6 (2) |
| S1—N2—C1—C2 | −16.8 (4) | C6—C7—C8—C9 | 0.5 (4) |
| N2—C1—C2—C3 | 178.6 (3) | C7—C8—C9—C10 | 1.0 (4) |
| C5—C1—C2—C3 | −2.7 (5) | C7—C8—C9—N3 | 179.0 (3) |
| C4—N1—C3—C2 | 1.4 (5) | O4—N3—C9—C10 | 179.1 (3) |
| C1—C2—C3—N1 | 0.4 (5) | O3—N3—C9—C10 | 0.6 (4) |
| C3—N1—C4—C5 | −0.6 (5) | O4—N3—C9—C8 | 0.9 (4) |
| N1—C4—C5—C1 | −1.8 (5) | O3—N3—C9—C8 | −177.6 (3) |
| N2—C1—C5—C4 | −177.7 (3) | C8—C9—C10—C11 | −1.7 (4) |
| C2—C1—C5—C4 | 3.4 (4) | N3—C9—C10—C11 | −179.8 (3) |
| O1—S1—C6—C11 | −1.5 (3) | C9—C10—C11—C6 | 1.0 (4) |
| O2—S1—C6—C11 | 123.1 (2) | C7—C6—C11—C10 | 0.5 (4) |
| N2—S1—C6—C11 | −124.7 (2) | S1—C6—C11—C10 | −178.3 (2) |
| O1—S1—C6—C7 | 179.7 (2) |
| H··· | ||||
| O5—H5A···N2 | 0.85 (4) | 1.97 (4) | 2.813 (3) | 167 (4) |
| O5—H5B···O2i | 0.85 (5) | 2.07 (5) | 2.895 (3) | 164 (4) |
| N1—H1A···O5ii | 0.92 (4) | 1.82 (4) | 2.728 (3) | 170 (4) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O5—H5 | 0.85 (4) | 1.97 (4) | 2.813 (3) | 167 (4) |
| O5—H5 | 0.85 (5) | 2.07 (5) | 2.895 (3) | 164 (4) |
| N1—H1 | 0.92 (4) | 1.82 (4) | 2.728 (3) | 170 (4) |
Symmetry codes: (i) ; (ii) .