| Literature DB >> 21580961 |
Ai-Ke Li1, Jian-Xin Chen, Li-Qun Zheng, Mei-Ping Zhu, Li Zhang.
Abstract
In the title compound, C(20)H(14)FN(3), the pyrimidine ring adopts a half-chair conformation. The dihedral angle between the benzimidazole ring system and the fluoro-phenyl ring is 84.18 (10)°. In the crystal structure, mol-ecules are linked into a two-dimensional network parallel to the bc plane by N-H⋯N and C-H⋯F hydrogen bonds.Entities:
Year: 2008 PMID: 21580961 PMCID: PMC2959727 DOI: 10.1107/S1600536808031875
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H14FN3 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3589 reflections |
| θ = 3.0–27.5° | |
| µ = 0.09 mm−1 | |
| β = 99.78 (3)° | Chunk, brown |
| 0.23 × 0.21 × 0.15 mm | |
| Rigaku Weissenberg IP diffractometer | 3591 independent reflections |
| Radiation source: sealed tube | 2286 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.5°, θmin = 3.0° |
| Absorption correction: multi-scan (RAPID-AUTO; Rigaku, 1998) | |
| 15171 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3591 reflections | (Δ/σ)max = 0.001 |
| 217 parameters | Δρmax = 0.33 e Å−3 |
| 0 restraints | Δρmin = −0.31 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| F1 | 0.22484 (19) | 0.16127 (14) | 0.15884 (10) | 0.1072 (6) | |
| N1 | 0.51477 (19) | 0.25468 (13) | 0.34079 (11) | 0.0606 (5) | |
| H1A | 0.5498 | 0.2553 | 0.2844 | 0.073* | |
| N2 | 0.41799 (18) | 0.15511 (12) | 0.45924 (10) | 0.0519 (4) | |
| N3 | 0.4822 (2) | 0.16940 (12) | 0.62780 (11) | 0.0571 (4) | |
| C1 | 0.4941 (2) | 0.20758 (14) | 0.53935 (12) | 0.0500 (4) | |
| C2 | 0.3860 (2) | 0.08770 (15) | 0.60402 (14) | 0.0553 (5) | |
| C3 | 0.3286 (3) | 0.02189 (17) | 0.66787 (16) | 0.0698 (6) | |
| H3B | 0.3564 | 0.0268 | 0.7381 | 0.084* | |
| C4 | 0.2299 (3) | −0.05068 (18) | 0.62477 (19) | 0.0769 (6) | |
| H4A | 0.1894 | −0.0949 | 0.6664 | 0.092* | |
| C5 | 0.1893 (3) | −0.05921 (18) | 0.5196 (2) | 0.0793 (7) | |
| H5A | 0.1232 | −0.1095 | 0.4924 | 0.095* | |
| C6 | 0.2453 (3) | 0.00545 (16) | 0.45505 (17) | 0.0671 (6) | |
| H6A | 0.2180 | 0.0003 | 0.3848 | 0.081* | |
| C7 | 0.3436 (2) | 0.07804 (14) | 0.49963 (14) | 0.0541 (5) | |
| C8 | 0.5723 (2) | 0.29641 (14) | 0.51872 (13) | 0.0517 (4) | |
| C9 | 0.5753 (2) | 0.31982 (15) | 0.41612 (13) | 0.0523 (5) | |
| C10 | 0.6471 (3) | 0.40634 (17) | 0.39484 (16) | 0.0646 (6) | |
| H10A | 0.6476 | 0.4239 | 0.3276 | 0.077* | |
| C11 | 0.7168 (3) | 0.46590 (18) | 0.47110 (19) | 0.0747 (6) | |
| H11A | 0.7660 | 0.5230 | 0.4551 | 0.090* | |
| C12 | 0.7158 (3) | 0.44306 (17) | 0.57132 (18) | 0.0736 (6) | |
| H12A | 0.7646 | 0.4842 | 0.6225 | 0.088* | |
| C13 | 0.6429 (3) | 0.35968 (15) | 0.59553 (15) | 0.0621 (5) | |
| H13A | 0.6401 | 0.3450 | 0.6632 | 0.075* | |
| C14 | 0.3936 (2) | 0.18490 (15) | 0.35345 (12) | 0.0528 (5) | |
| H14A | 0.4050 | 0.1270 | 0.3119 | 0.063* | |
| C15 | 0.2318 (2) | 0.22592 (14) | 0.32082 (13) | 0.0522 (5) | |
| C16 | 0.1535 (3) | 0.21340 (17) | 0.22401 (16) | 0.0668 (6) | |
| C17 | 0.0088 (3) | 0.2507 (2) | 0.1890 (2) | 0.0894 (8) | |
| H17A | −0.0400 | 0.2398 | 0.1224 | 0.107* | |
| C18 | −0.0614 (3) | 0.3038 (2) | 0.2538 (3) | 0.0944 (8) | |
| H18A | −0.1598 | 0.3297 | 0.2317 | 0.113* | |
| C19 | 0.0113 (3) | 0.3198 (2) | 0.3516 (2) | 0.0937 (8) | |
| H19A | −0.0373 | 0.3570 | 0.3955 | 0.112* | |
| C20 | 0.1567 (3) | 0.28070 (19) | 0.38496 (18) | 0.0762 (7) | |
| H20A | 0.2051 | 0.2913 | 0.4517 | 0.091* |
| F1 | 0.1146 (12) | 0.1504 (14) | 0.0498 (8) | 0.0203 (11) | −0.0054 (7) | −0.0329 (8) |
| N1 | 0.0651 (10) | 0.0853 (12) | 0.0328 (7) | 0.0036 (9) | 0.0128 (7) | 0.0029 (7) |
| N2 | 0.0612 (9) | 0.0631 (9) | 0.0304 (7) | 0.0075 (8) | 0.0047 (6) | 0.0008 (6) |
| N3 | 0.0700 (10) | 0.0691 (10) | 0.0320 (8) | 0.0019 (9) | 0.0081 (7) | 0.0012 (7) |
| C1 | 0.0579 (10) | 0.0610 (11) | 0.0305 (8) | 0.0078 (9) | 0.0056 (7) | −0.0013 (7) |
| C2 | 0.0646 (12) | 0.0598 (11) | 0.0414 (10) | 0.0055 (10) | 0.0088 (8) | 0.0028 (8) |
| C3 | 0.0853 (15) | 0.0752 (14) | 0.0496 (11) | −0.0042 (12) | 0.0131 (10) | 0.0088 (10) |
| C4 | 0.0859 (16) | 0.0714 (14) | 0.0734 (15) | −0.0053 (13) | 0.0136 (12) | 0.0156 (12) |
| C5 | 0.0819 (16) | 0.0672 (13) | 0.0852 (18) | −0.0053 (12) | 0.0033 (13) | −0.0018 (13) |
| C6 | 0.0759 (14) | 0.0694 (13) | 0.0521 (11) | 0.0037 (11) | −0.0002 (10) | −0.0035 (10) |
| C7 | 0.0595 (11) | 0.0560 (10) | 0.0456 (10) | 0.0079 (9) | 0.0057 (8) | 0.0000 (8) |
| C8 | 0.0566 (10) | 0.0591 (11) | 0.0406 (9) | 0.0083 (9) | 0.0113 (8) | 0.0024 (8) |
| C9 | 0.0507 (10) | 0.0679 (12) | 0.0391 (9) | 0.0131 (9) | 0.0100 (8) | 0.0030 (8) |
| C10 | 0.0688 (13) | 0.0753 (13) | 0.0530 (12) | 0.0096 (11) | 0.0205 (10) | 0.0159 (10) |
| C11 | 0.0840 (16) | 0.0704 (14) | 0.0751 (15) | −0.0008 (12) | 0.0290 (13) | 0.0086 (12) |
| C12 | 0.0897 (16) | 0.0698 (13) | 0.0639 (14) | −0.0097 (13) | 0.0202 (12) | −0.0090 (11) |
| C13 | 0.0754 (13) | 0.0693 (13) | 0.0427 (10) | −0.0020 (11) | 0.0131 (9) | −0.0044 (9) |
| C14 | 0.0653 (11) | 0.0648 (11) | 0.0270 (8) | 0.0133 (10) | 0.0041 (7) | −0.0026 (8) |
| C15 | 0.0587 (11) | 0.0567 (10) | 0.0392 (9) | 0.0054 (9) | 0.0026 (8) | −0.0002 (8) |
| C16 | 0.0716 (14) | 0.0800 (14) | 0.0444 (10) | 0.0017 (11) | −0.0027 (9) | −0.0029 (10) |
| C17 | 0.0748 (16) | 0.114 (2) | 0.0674 (15) | 0.0012 (15) | −0.0206 (13) | 0.0111 (15) |
| C18 | 0.0635 (15) | 0.103 (2) | 0.110 (2) | 0.0173 (15) | −0.0057 (15) | 0.0153 (18) |
| C19 | 0.0721 (16) | 0.106 (2) | 0.101 (2) | 0.0296 (15) | 0.0072 (15) | −0.0133 (16) |
| C20 | 0.0701 (14) | 0.0927 (16) | 0.0630 (14) | 0.0226 (13) | 0.0031 (11) | −0.0155 (12) |
| F1—C16 | 1.354 (3) | C8—C9 | 1.412 (2) |
| N1—C9 | 1.378 (3) | C9—C10 | 1.387 (3) |
| N1—C14 | 1.454 (3) | C10—C11 | 1.362 (3) |
| N1—H1A | 0.8600 | C10—H10A | 0.93 |
| N2—C1 | 1.362 (2) | C11—C12 | 1.376 (3) |
| N2—C7 | 1.391 (2) | C11—H11A | 0.93 |
| N2—C14 | 1.451 (2) | C12—C13 | 1.368 (3) |
| N3—C1 | 1.311 (2) | C12—H12A | 0.93 |
| N3—C2 | 1.398 (3) | C13—H13A | 0.93 |
| C1—C8 | 1.439 (3) | C14—C15 | 1.514 (3) |
| C2—C7 | 1.387 (3) | C14—H14A | 0.98 |
| C2—C3 | 1.388 (3) | C15—C16 | 1.367 (3) |
| C3—C4 | 1.372 (3) | C15—C20 | 1.382 (3) |
| C3—H3B | 0.93 | C16—C17 | 1.369 (3) |
| C4—C5 | 1.394 (3) | C17—C18 | 1.352 (4) |
| C4—H4A | 0.93 | C17—H17A | 0.93 |
| C5—C6 | 1.378 (3) | C18—C19 | 1.370 (4) |
| C5—H5A | 0.93 | C18—H18A | 0.93 |
| C6—C7 | 1.377 (3) | C19—C20 | 1.380 (3) |
| C6—H6A | 0.93 | C19—H19A | 0.93 |
| C8—C13 | 1.400 (3) | C20—H20A | 0.93 |
| C9—N1—C14 | 122.21 (14) | C11—C10—H10A | 119.6 |
| C9—N1—H1A | 118.9 | C9—C10—H10A | 119.6 |
| C14—N1—H1A | 118.9 | C10—C11—C12 | 121.1 (2) |
| C1—N2—C7 | 106.81 (14) | C10—C11—H11A | 119.4 |
| C1—N2—C14 | 126.12 (16) | C12—C11—H11A | 119.4 |
| C7—N2—C14 | 126.01 (16) | C13—C12—C11 | 119.9 (2) |
| C1—N3—C2 | 104.34 (15) | C13—C12—H12A | 120.1 |
| N3—C1—N2 | 113.37 (17) | C11—C12—H12A | 120.1 |
| N3—C1—C8 | 128.24 (17) | C12—C13—C8 | 120.18 (19) |
| N2—C1—C8 | 118.36 (15) | C12—C13—H13A | 119.9 |
| C7—C2—C3 | 119.58 (19) | C8—C13—H13A | 119.9 |
| C7—C2—N3 | 110.58 (16) | N2—C14—N1 | 107.87 (15) |
| C3—C2—N3 | 129.82 (18) | N2—C14—C15 | 111.05 (14) |
| C4—C3—C2 | 118.3 (2) | N1—C14—C15 | 112.81 (16) |
| C4—C3—H3B | 120.8 | N2—C14—H14A | 108.3 |
| C2—C3—H3B | 120.8 | N1—C14—H14A | 108.3 |
| C3—C4—C5 | 121.1 (2) | C15—C14—H14A | 108.3 |
| C3—C4—H4A | 119.4 | C16—C15—C20 | 116.13 (19) |
| C5—C4—H4A | 119.4 | C16—C15—C14 | 121.23 (17) |
| C6—C5—C4 | 121.4 (2) | C20—C15—C14 | 122.60 (17) |
| C6—C5—H5A | 119.3 | F1—C16—C15 | 117.59 (19) |
| C4—C5—H5A | 119.3 | F1—C16—C17 | 118.3 (2) |
| C7—C6—C5 | 116.7 (2) | C15—C16—C17 | 124.1 (2) |
| C7—C6—H6A | 121.6 | C18—C17—C16 | 118.2 (2) |
| C5—C6—H6A | 121.6 | C18—C17—H17A | 120.9 |
| C6—C7—C2 | 122.92 (19) | C16—C17—H17A | 120.9 |
| C6—C7—N2 | 132.26 (18) | C17—C18—C19 | 120.6 (2) |
| C2—C7—N2 | 104.81 (17) | C17—C18—H18A | 119.7 |
| C13—C8—C9 | 119.59 (19) | C19—C18—H18A | 119.7 |
| C13—C8—C1 | 122.78 (16) | C18—C19—C20 | 119.9 (3) |
| C9—C8—C1 | 117.62 (17) | C18—C19—H19A | 120.1 |
| N1—C9—C10 | 121.90 (17) | C20—C19—H19A | 120.1 |
| N1—C9—C8 | 119.68 (18) | C19—C20—C15 | 121.1 (2) |
| C10—C9—C8 | 118.33 (19) | C19—C20—H20A | 119.5 |
| C11—C10—C9 | 120.87 (19) | C15—C20—H20A | 119.5 |
| C2—N3—C1—N2 | −2.4 (2) | C13—C8—C9—C10 | −0.8 (3) |
| C2—N3—C1—C8 | 176.00 (18) | C1—C8—C9—C10 | 178.52 (16) |
| C7—N2—C1—N3 | 3.0 (2) | N1—C9—C10—C11 | −174.8 (2) |
| C14—N2—C1—N3 | 171.79 (16) | C8—C9—C10—C11 | 1.8 (3) |
| C7—N2—C1—C8 | −175.55 (15) | C9—C10—C11—C12 | −1.2 (4) |
| C14—N2—C1—C8 | −6.8 (3) | C10—C11—C12—C13 | −0.5 (4) |
| C1—N3—C2—C7 | 0.9 (2) | C11—C12—C13—C8 | 1.4 (3) |
| C1—N3—C2—C3 | −177.1 (2) | C9—C8—C13—C12 | −0.8 (3) |
| C7—C2—C3—C4 | −0.5 (3) | C1—C8—C13—C12 | 179.9 (2) |
| N3—C2—C3—C4 | 177.4 (2) | C1—N2—C14—N1 | 24.3 (2) |
| C2—C3—C4—C5 | 0.8 (4) | C7—N2—C14—N1 | −168.98 (16) |
| C3—C4—C5—C6 | −0.7 (4) | C1—N2—C14—C15 | −99.8 (2) |
| C4—C5—C6—C7 | 0.4 (3) | C7—N2—C14—C15 | 66.9 (2) |
| C5—C6—C7—C2 | −0.2 (3) | C9—N1—C14—N2 | −33.8 (2) |
| C5—C6—C7—N2 | −178.7 (2) | C9—N1—C14—C15 | 89.2 (2) |
| C3—C2—C7—C6 | 0.2 (3) | N2—C14—C15—C16 | −146.77 (19) |
| N3—C2—C7—C6 | −178.02 (19) | N1—C14—C15—C16 | 92.0 (2) |
| C3—C2—C7—N2 | 179.11 (18) | N2—C14—C15—C20 | 35.6 (3) |
| N3—C2—C7—N2 | 0.9 (2) | N1—C14—C15—C20 | −85.7 (2) |
| C1—N2—C7—C6 | 176.5 (2) | C20—C15—C16—F1 | 179.1 (2) |
| C14—N2—C7—C6 | 7.7 (3) | C14—C15—C16—F1 | 1.3 (3) |
| C1—N2—C7—C2 | −2.2 (2) | C20—C15—C16—C17 | −0.5 (4) |
| C14—N2—C7—C2 | −171.00 (16) | C14—C15—C16—C17 | −178.3 (2) |
| N3—C1—C8—C13 | −3.7 (3) | F1—C16—C17—C18 | −179.1 (2) |
| N2—C1—C8—C13 | 174.62 (18) | C15—C16—C17—C18 | 0.4 (4) |
| N3—C1—C8—C9 | 176.94 (18) | C16—C17—C18—C19 | 0.2 (4) |
| N2—C1—C8—C9 | −4.7 (3) | C17—C18—C19—C20 | −0.7 (5) |
| C14—N1—C9—C10 | −157.02 (18) | C18—C19—C20—C15 | 0.6 (4) |
| C14—N1—C9—C8 | 26.4 (3) | C16—C15—C20—C19 | 0.0 (4) |
| C13—C8—C9—N1 | 175.87 (18) | C14—C15—C20—C19 | 177.7 (2) |
| C1—C8—C9—N1 | −4.8 (3) |
| H··· | ||||
| N1—H1A···N3i | 0.86 | 2.31 | 2.995 (2) | 136 |
| C11—H11A···F1ii | 0.93 | 2.43 | 3.264 (3) | 149 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.86 | 2.31 | 2.995 (2) | 136 |
| C11—H11 | 0.93 | 2.43 | 3.264 (3) | 149 |
Symmetry codes: (i) ; (ii) .