Literature DB >> 21580961

6-(2-Fluoro-phen-yl)-5,6-dihydro-benzimidazolo[1,2-c]quinazoline.

Ai-Ke Li1, Jian-Xin Chen, Li-Qun Zheng, Mei-Ping Zhu, Li Zhang.   

Abstract

In the title compound, C(20)H(14)FN(3), the pyrimidine ring adopts a half-chair conformation. The dihedral angle between the benzimidazole ring system and the fluoro-phenyl ring is 84.18 (10)°. In the crystal structure, mol-ecules are linked into a two-dimensional network parallel to the bc plane by N-H⋯N and C-H⋯F hydrogen bonds.

Entities:  

Year:  2008        PMID: 21580961      PMCID: PMC2959727          DOI: 10.1107/S1600536808031875

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Elgemeie et al. (1998 ▶); Jayalakshmi et al. (2004 ▶); Low et al. (2003 ▶); Mahendra et al. (2005 ▶). For related literature, see: Alexandre et al. (2003 ▶); Bandurco et al. (1981 ▶); Chern et al. (1993 ▶); Fatmi et al. (1984 ▶).

Experimental

Crystal data

C20H14FN3 M = 315.34 Monoclinic, a = 8.7344 (17) Å b = 13.623 (3) Å c = 13.356 (3) Å β = 99.78 (3)° V = 1566.1 (6) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 298 (2) K 0.23 × 0.21 × 0.15 mm

Data collection

Rigaku R-AXIS RAPID IP diffractometer Absorption correction: multi-scan (RAPID-AUTO; Rigaku, 1998 ▶) T min = 0.899, T max = 0.991 15171 measured reflections 3591 independent reflections 2286 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.160 S = 1.06 3591 reflections 217 parameters H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.31 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: RAPID-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL/PC (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808031875/ci2668sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808031875/ci2668Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H14FN3F(000) = 656
Mr = 315.34Dx = 1.337 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3589 reflections
a = 8.7344 (17) Åθ = 3.0–27.5°
b = 13.623 (3) ŵ = 0.09 mm1
c = 13.356 (3) ÅT = 298 K
β = 99.78 (3)°Chunk, brown
V = 1566.1 (6) Å30.23 × 0.21 × 0.15 mm
Z = 4
Rigaku Weissenberg IP diffractometer3591 independent reflections
Radiation source: sealed tube2286 reflections with I > 2σ(I)
graphiteRint = 0.035
φ and ω scansθmax = 27.5°, θmin = 3.0°
Absorption correction: multi-scan (RAPID-AUTO; Rigaku, 1998)h = −11→11
Tmin = 0.899, Tmax = 0.991k = −17→16
15171 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.160H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0751P)2 + 0.2459P] where P = (Fo2 + 2Fc2)/3
3591 reflections(Δ/σ)max = 0.001
217 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.31 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.22484 (19)0.16127 (14)0.15884 (10)0.1072 (6)
N10.51477 (19)0.25468 (13)0.34079 (11)0.0606 (5)
H1A0.54980.25530.28440.073*
N20.41799 (18)0.15511 (12)0.45924 (10)0.0519 (4)
N30.4822 (2)0.16940 (12)0.62780 (11)0.0571 (4)
C10.4941 (2)0.20758 (14)0.53935 (12)0.0500 (4)
C20.3860 (2)0.08770 (15)0.60402 (14)0.0553 (5)
C30.3286 (3)0.02189 (17)0.66787 (16)0.0698 (6)
H3B0.35640.02680.73810.084*
C40.2299 (3)−0.05068 (18)0.62477 (19)0.0769 (6)
H4A0.1894−0.09490.66640.092*
C50.1893 (3)−0.05921 (18)0.5196 (2)0.0793 (7)
H5A0.1232−0.10950.49240.095*
C60.2453 (3)0.00545 (16)0.45505 (17)0.0671 (6)
H6A0.21800.00030.38480.081*
C70.3436 (2)0.07804 (14)0.49963 (14)0.0541 (5)
C80.5723 (2)0.29641 (14)0.51872 (13)0.0517 (4)
C90.5753 (2)0.31982 (15)0.41612 (13)0.0523 (5)
C100.6471 (3)0.40634 (17)0.39484 (16)0.0646 (6)
H10A0.64760.42390.32760.077*
C110.7168 (3)0.46590 (18)0.47110 (19)0.0747 (6)
H11A0.76600.52300.45510.090*
C120.7158 (3)0.44306 (17)0.57132 (18)0.0736 (6)
H12A0.76460.48420.62250.088*
C130.6429 (3)0.35968 (15)0.59553 (15)0.0621 (5)
H13A0.64010.34500.66320.075*
C140.3936 (2)0.18490 (15)0.35345 (12)0.0528 (5)
H14A0.40500.12700.31190.063*
C150.2318 (2)0.22592 (14)0.32082 (13)0.0522 (5)
C160.1535 (3)0.21340 (17)0.22401 (16)0.0668 (6)
C170.0088 (3)0.2507 (2)0.1890 (2)0.0894 (8)
H17A−0.04000.23980.12240.107*
C18−0.0614 (3)0.3038 (2)0.2538 (3)0.0944 (8)
H18A−0.15980.32970.23170.113*
C190.0113 (3)0.3198 (2)0.3516 (2)0.0937 (8)
H19A−0.03730.35700.39550.112*
C200.1567 (3)0.28070 (19)0.38496 (18)0.0762 (7)
H20A0.20510.29130.45170.091*
U11U22U33U12U13U23
F10.1146 (12)0.1504 (14)0.0498 (8)0.0203 (11)−0.0054 (7)−0.0329 (8)
N10.0651 (10)0.0853 (12)0.0328 (7)0.0036 (9)0.0128 (7)0.0029 (7)
N20.0612 (9)0.0631 (9)0.0304 (7)0.0075 (8)0.0047 (6)0.0008 (6)
N30.0700 (10)0.0691 (10)0.0320 (8)0.0019 (9)0.0081 (7)0.0012 (7)
C10.0579 (10)0.0610 (11)0.0305 (8)0.0078 (9)0.0056 (7)−0.0013 (7)
C20.0646 (12)0.0598 (11)0.0414 (10)0.0055 (10)0.0088 (8)0.0028 (8)
C30.0853 (15)0.0752 (14)0.0496 (11)−0.0042 (12)0.0131 (10)0.0088 (10)
C40.0859 (16)0.0714 (14)0.0734 (15)−0.0053 (13)0.0136 (12)0.0156 (12)
C50.0819 (16)0.0672 (13)0.0852 (18)−0.0053 (12)0.0033 (13)−0.0018 (13)
C60.0759 (14)0.0694 (13)0.0521 (11)0.0037 (11)−0.0002 (10)−0.0035 (10)
C70.0595 (11)0.0560 (10)0.0456 (10)0.0079 (9)0.0057 (8)0.0000 (8)
C80.0566 (10)0.0591 (11)0.0406 (9)0.0083 (9)0.0113 (8)0.0024 (8)
C90.0507 (10)0.0679 (12)0.0391 (9)0.0131 (9)0.0100 (8)0.0030 (8)
C100.0688 (13)0.0753 (13)0.0530 (12)0.0096 (11)0.0205 (10)0.0159 (10)
C110.0840 (16)0.0704 (14)0.0751 (15)−0.0008 (12)0.0290 (13)0.0086 (12)
C120.0897 (16)0.0698 (13)0.0639 (14)−0.0097 (13)0.0202 (12)−0.0090 (11)
C130.0754 (13)0.0693 (13)0.0427 (10)−0.0020 (11)0.0131 (9)−0.0044 (9)
C140.0653 (11)0.0648 (11)0.0270 (8)0.0133 (10)0.0041 (7)−0.0026 (8)
C150.0587 (11)0.0567 (10)0.0392 (9)0.0054 (9)0.0026 (8)−0.0002 (8)
C160.0716 (14)0.0800 (14)0.0444 (10)0.0017 (11)−0.0027 (9)−0.0029 (10)
C170.0748 (16)0.114 (2)0.0674 (15)0.0012 (15)−0.0206 (13)0.0111 (15)
C180.0635 (15)0.103 (2)0.110 (2)0.0173 (15)−0.0057 (15)0.0153 (18)
C190.0721 (16)0.106 (2)0.101 (2)0.0296 (15)0.0072 (15)−0.0133 (16)
C200.0701 (14)0.0927 (16)0.0630 (14)0.0226 (13)0.0031 (11)−0.0155 (12)
F1—C161.354 (3)C8—C91.412 (2)
N1—C91.378 (3)C9—C101.387 (3)
N1—C141.454 (3)C10—C111.362 (3)
N1—H1A0.8600C10—H10A0.93
N2—C11.362 (2)C11—C121.376 (3)
N2—C71.391 (2)C11—H11A0.93
N2—C141.451 (2)C12—C131.368 (3)
N3—C11.311 (2)C12—H12A0.93
N3—C21.398 (3)C13—H13A0.93
C1—C81.439 (3)C14—C151.514 (3)
C2—C71.387 (3)C14—H14A0.98
C2—C31.388 (3)C15—C161.367 (3)
C3—C41.372 (3)C15—C201.382 (3)
C3—H3B0.93C16—C171.369 (3)
C4—C51.394 (3)C17—C181.352 (4)
C4—H4A0.93C17—H17A0.93
C5—C61.378 (3)C18—C191.370 (4)
C5—H5A0.93C18—H18A0.93
C6—C71.377 (3)C19—C201.380 (3)
C6—H6A0.93C19—H19A0.93
C8—C131.400 (3)C20—H20A0.93
C9—N1—C14122.21 (14)C11—C10—H10A119.6
C9—N1—H1A118.9C9—C10—H10A119.6
C14—N1—H1A118.9C10—C11—C12121.1 (2)
C1—N2—C7106.81 (14)C10—C11—H11A119.4
C1—N2—C14126.12 (16)C12—C11—H11A119.4
C7—N2—C14126.01 (16)C13—C12—C11119.9 (2)
C1—N3—C2104.34 (15)C13—C12—H12A120.1
N3—C1—N2113.37 (17)C11—C12—H12A120.1
N3—C1—C8128.24 (17)C12—C13—C8120.18 (19)
N2—C1—C8118.36 (15)C12—C13—H13A119.9
C7—C2—C3119.58 (19)C8—C13—H13A119.9
C7—C2—N3110.58 (16)N2—C14—N1107.87 (15)
C3—C2—N3129.82 (18)N2—C14—C15111.05 (14)
C4—C3—C2118.3 (2)N1—C14—C15112.81 (16)
C4—C3—H3B120.8N2—C14—H14A108.3
C2—C3—H3B120.8N1—C14—H14A108.3
C3—C4—C5121.1 (2)C15—C14—H14A108.3
C3—C4—H4A119.4C16—C15—C20116.13 (19)
C5—C4—H4A119.4C16—C15—C14121.23 (17)
C6—C5—C4121.4 (2)C20—C15—C14122.60 (17)
C6—C5—H5A119.3F1—C16—C15117.59 (19)
C4—C5—H5A119.3F1—C16—C17118.3 (2)
C7—C6—C5116.7 (2)C15—C16—C17124.1 (2)
C7—C6—H6A121.6C18—C17—C16118.2 (2)
C5—C6—H6A121.6C18—C17—H17A120.9
C6—C7—C2122.92 (19)C16—C17—H17A120.9
C6—C7—N2132.26 (18)C17—C18—C19120.6 (2)
C2—C7—N2104.81 (17)C17—C18—H18A119.7
C13—C8—C9119.59 (19)C19—C18—H18A119.7
C13—C8—C1122.78 (16)C18—C19—C20119.9 (3)
C9—C8—C1117.62 (17)C18—C19—H19A120.1
N1—C9—C10121.90 (17)C20—C19—H19A120.1
N1—C9—C8119.68 (18)C19—C20—C15121.1 (2)
C10—C9—C8118.33 (19)C19—C20—H20A119.5
C11—C10—C9120.87 (19)C15—C20—H20A119.5
C2—N3—C1—N2−2.4 (2)C13—C8—C9—C10−0.8 (3)
C2—N3—C1—C8176.00 (18)C1—C8—C9—C10178.52 (16)
C7—N2—C1—N33.0 (2)N1—C9—C10—C11−174.8 (2)
C14—N2—C1—N3171.79 (16)C8—C9—C10—C111.8 (3)
C7—N2—C1—C8−175.55 (15)C9—C10—C11—C12−1.2 (4)
C14—N2—C1—C8−6.8 (3)C10—C11—C12—C13−0.5 (4)
C1—N3—C2—C70.9 (2)C11—C12—C13—C81.4 (3)
C1—N3—C2—C3−177.1 (2)C9—C8—C13—C12−0.8 (3)
C7—C2—C3—C4−0.5 (3)C1—C8—C13—C12179.9 (2)
N3—C2—C3—C4177.4 (2)C1—N2—C14—N124.3 (2)
C2—C3—C4—C50.8 (4)C7—N2—C14—N1−168.98 (16)
C3—C4—C5—C6−0.7 (4)C1—N2—C14—C15−99.8 (2)
C4—C5—C6—C70.4 (3)C7—N2—C14—C1566.9 (2)
C5—C6—C7—C2−0.2 (3)C9—N1—C14—N2−33.8 (2)
C5—C6—C7—N2−178.7 (2)C9—N1—C14—C1589.2 (2)
C3—C2—C7—C60.2 (3)N2—C14—C15—C16−146.77 (19)
N3—C2—C7—C6−178.02 (19)N1—C14—C15—C1692.0 (2)
C3—C2—C7—N2179.11 (18)N2—C14—C15—C2035.6 (3)
N3—C2—C7—N20.9 (2)N1—C14—C15—C20−85.7 (2)
C1—N2—C7—C6176.5 (2)C20—C15—C16—F1179.1 (2)
C14—N2—C7—C67.7 (3)C14—C15—C16—F11.3 (3)
C1—N2—C7—C2−2.2 (2)C20—C15—C16—C17−0.5 (4)
C14—N2—C7—C2−171.00 (16)C14—C15—C16—C17−178.3 (2)
N3—C1—C8—C13−3.7 (3)F1—C16—C17—C18−179.1 (2)
N2—C1—C8—C13174.62 (18)C15—C16—C17—C180.4 (4)
N3—C1—C8—C9176.94 (18)C16—C17—C18—C190.2 (4)
N2—C1—C8—C9−4.7 (3)C17—C18—C19—C20−0.7 (5)
C14—N1—C9—C10−157.02 (18)C18—C19—C20—C150.6 (4)
C14—N1—C9—C826.4 (3)C16—C15—C20—C190.0 (4)
C13—C8—C9—N1175.87 (18)C14—C15—C20—C19177.7 (2)
C1—C8—C9—N1−4.8 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···N3i0.862.312.995 (2)136
C11—H11A···F1ii0.932.433.264 (3)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯N3i0.862.312.995 (2)136
C11—H11A⋯F1ii0.932.433.264 (3)149

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis of previously inaccessible quinazolines and 1,4-benzodiazepines as potential anticonvulsants.

Authors:  A A Fatmi; N A Vaidya; W B Iturrian; C D Blanton
Journal:  J Med Chem       Date:  1984-06       Impact factor: 7.446

3.  Studies on quinazolines. 5. 2,3-dihydroimidazo[1,2-c]quinazoline derivatives: a novel class of potent and selective alpha 1-adrenoceptor antagonists and antihypertensive agents.

Authors:  J W Chern; P L Tao; M H Yen; G Y Lu; C Y Shiau; Y J Lai; S L Chien; C H Chan
Journal:  J Med Chem       Date:  1993-07-23       Impact factor: 7.446

4.  Antihypertensive pyrrolo[1,2-c]quinazolines and pyrrolo[1,2-c]quinazolinones.

Authors:  V T Bandurco; E M Wong; S D Levine; Z G Hajos
Journal:  J Med Chem       Date:  1981-12       Impact factor: 7.446

  4 in total

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