Literature DB >> 21580954

(3RS,4SR)-Methyl 4-(2-chloro-5,8-di-methoxy-quinolin-3-yl)-1-phenyl-pyrrolidine-3-carboxyl-ate.

Saida Benzerka, Abdelmalek Bouraiou, Sofiane Bouacida, Salah Rhouati, Ali Belfaitah.   

Abstract

The mol-ecule of the title compound, C(23)H(23)ClN(2)O(4), contains a quinolyl unit linked to a functionalized pyrrolidine system with a 3,4-trans arrangement of the substituents. The unit cell contains two stereoisomers that have the absolute stereochemistry 3S,4R and 3R,4S. The pyrrolidine ring adopts a twist conformation with pseudo-rotation parameters P = 258.2 (3)° and τ(M) = 35.3 (1)°. The packing is stabilized by C-H⋯π inter-actions and offset π-π stacking (centroid-to-centroid distance = 3.849 Å, inter-planar distance = 3.293 Å and slippage = 1.994 Å) between phenyl rings, leading to a two-dimensional network.

Entities:  

Year:  2008        PMID: 21580954      PMCID: PMC2959501          DOI: 10.1107/S1600536808031838

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Padwa et al. (1999 ▶); Sahu et al. (2002 ▶); Robert & Meunier (1998 ▶); Dow et al. (2006 ▶); Witherup et al. (1995 ▶); Kravchenko et al. (2005 ▶); Bouraiou et al. (2008 ▶); Rezig et al. (2000 ▶); Moussaoui et al. (2002 ▶); Menasra et al. (2005 ▶); Rao et al. (1981 ▶). For related structures, see: Belfaitah et al. (2006 ▶); Bouraiou et al. (2007a ▶,b ▶).

Experimental

Crystal data

C23H23ClN2O4 M = 426.88 Monoclinic, a = 9.579 (1) Å b = 17.518 (1) Å c = 12.944 (2) Å β = 109.01 (2)° V = 2053.6 (5) Å3 Z = 4 Mo Kα radiation μ = 0.22 mm−1 T = 296 (2) K 0.15 × 0.06 × 0.05 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: none 9271 measured reflections 4717 independent reflections 3062 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.178 S = 1.03 4717 reflections 274 parameters H-atom parameters constrained Δρmax = 0.38 e Å−3 Δρmin = −0.33 e Å−3 Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK; program(s) used to solve structure: SIR2002 (Burla et al., 2003 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), ORTEP-3 for Windows (Farrugia, 1997 ▶) and CAMERON (Pearce et al., 2000 ▶); software used to prepare material for publication: PLATON (Spek, 2003 ▶) and WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808031838/dn2384sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808031838/dn2384Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H23ClN2O4F(000) = 896
Mr = 426.88Dx = 1.381 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4717 reflections
a = 9.579 (1) Åθ = 2.0–27.5°
b = 17.518 (1) ŵ = 0.22 mm1
c = 12.944 (2) ÅT = 296 K
β = 109.01 (2)°Needle, white
V = 2053.6 (5) Å30.15 × 0.06 × 0.05 mm
Z = 4
Nonius KappaCCD diffractometer3062 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.026
graphiteθmax = 27.5°, θmin = 2.0°
φ scans, and ω scans with κ offsetsh = −12→12
9271 measured reflectionsk = −22→22
4717 independent reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.178H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.102P)2 + 0.336P] where P = (Fo2 + 2Fc2)/3
4717 reflections(Δ/σ)max < 0.001
274 parametersΔρmax = 0.38 e Å3
0 restraintsΔρmin = −0.33 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C20.4396 (2)0.31838 (12)−0.07671 (19)0.0457 (5)
C30.3691 (3)0.26052 (12)−0.03567 (19)0.0482 (5)
C40.3895 (3)0.18796 (12)−0.0673 (2)0.0494 (5)
H40.34460.1473−0.04430.059*
C50.4777 (2)0.17338 (11)−0.13446 (18)0.0417 (5)
C60.5028 (3)0.09863 (12)−0.16864 (19)0.0463 (5)
C70.5869 (3)0.08969 (13)−0.2347 (2)0.0514 (5)
H70.60210.0411−0.25800.062*
C80.6515 (3)0.15355 (14)−0.2683 (2)0.0526 (6)
H80.70890.1461−0.31310.063*
C90.6317 (2)0.22567 (13)−0.23653 (18)0.0465 (5)
C100.5433 (2)0.23684 (12)−0.16778 (17)0.0417 (5)
C110.4590 (4)−0.03500 (14)−0.1605 (3)0.0733 (8)
H11A0.4239−0.0394−0.23870.110*
H11B0.4054−0.0697−0.13000.110*
H11C0.5623−0.0473−0.13340.110*
C120.7822 (3)0.28219 (17)−0.3307 (3)0.0708 (8)
H12A0.85970.2464−0.29730.106*
H12B0.82470.3308−0.33770.106*
H12C0.72440.2640−0.40170.106*
C130.2718 (3)0.27974 (13)0.0337 (2)0.0520 (6)
H130.31020.32510.07810.062*
C140.1144 (3)0.29516 (14)−0.0433 (2)0.0559 (6)
H140.11700.3162−0.11290.067*
C150.0444 (3)0.21579 (13)−0.0605 (2)0.0548 (6)
H15A−0.05960.2188−0.06820.066*
H15B0.05440.1921−0.12550.066*
C160.2513 (3)0.21506 (13)0.10654 (19)0.0487 (5)
H16A0.33850.18300.13050.058*
H16B0.23140.23510.17020.058*
C170.0583 (2)0.11625 (12)0.08000 (18)0.0441 (5)
C18−0.0791 (3)0.08503 (13)0.0195 (2)0.0500 (5)
H18−0.12770.1023−0.05110.060*
C19−0.1420 (3)0.02882 (15)0.0646 (2)0.0619 (7)
H19−0.23330.00890.02370.074*
C20−0.0738 (3)0.00156 (15)0.1677 (3)0.0694 (8)
H20−0.1182−0.03610.19710.083*
C210.0624 (3)0.03104 (15)0.2276 (2)0.0651 (7)
H210.11040.01270.29760.078*
C220.1281 (3)0.08755 (13)0.1845 (2)0.0519 (6)
H220.21990.10660.22590.062*
C230.0291 (3)0.34891 (17)0.0089 (3)0.0662 (7)
C24−0.1671 (4)0.4343 (2)−0.0293 (4)0.1079 (13)
H24A−0.25170.4048−0.02970.162*
H24B−0.19850.4769−0.07810.162*
H24C−0.11760.45270.04330.162*
Cl10.41733 (7)0.41375 (3)−0.04310 (5)0.0582 (2)
N10.5228 (2)0.30920 (10)−0.13716 (15)0.0447 (4)
N20.1249 (2)0.17236 (11)0.03698 (15)0.0487 (5)
O10.4375 (2)0.04110 (9)−0.13011 (16)0.0635 (5)
O20.6896 (2)0.29035 (10)−0.26382 (16)0.0650 (5)
O30.0479 (4)0.3523 (2)0.1042 (3)0.1496 (14)
O4−0.0678 (3)0.38737 (15)−0.0644 (2)0.0947 (8)
U11U22U33U12U13U23
C20.0513 (12)0.0368 (10)0.0521 (12)−0.0025 (9)0.0211 (10)0.0011 (9)
C30.0518 (13)0.0418 (11)0.0572 (14)−0.0015 (9)0.0262 (11)−0.0001 (9)
C40.0542 (13)0.0390 (10)0.0623 (14)−0.0046 (9)0.0292 (11)0.0025 (10)
C50.0422 (11)0.0385 (10)0.0478 (12)−0.0029 (8)0.0192 (9)0.0003 (8)
C60.0469 (12)0.0387 (11)0.0562 (13)−0.0012 (9)0.0210 (10)−0.0010 (9)
C70.0578 (14)0.0439 (11)0.0571 (14)0.0027 (10)0.0249 (11)−0.0048 (10)
C80.0566 (14)0.0570 (13)0.0535 (13)0.0023 (11)0.0306 (11)0.0002 (10)
C90.0472 (12)0.0485 (12)0.0480 (12)−0.0020 (9)0.0215 (10)0.0055 (9)
C100.0404 (11)0.0412 (11)0.0447 (12)−0.0007 (8)0.0155 (9)0.0037 (8)
C110.088 (2)0.0378 (12)0.106 (2)−0.0050 (13)0.0492 (18)−0.0099 (13)
C120.0718 (18)0.0793 (18)0.0783 (19)0.0021 (14)0.0476 (16)0.0170 (15)
C130.0581 (14)0.0469 (12)0.0550 (14)−0.0054 (10)0.0239 (11)−0.0039 (10)
C140.0670 (15)0.0525 (13)0.0547 (14)0.0026 (11)0.0288 (12)0.0043 (11)
C150.0602 (14)0.0527 (13)0.0488 (13)−0.0032 (11)0.0142 (11)0.0016 (10)
C160.0485 (12)0.0512 (12)0.0483 (12)−0.0079 (10)0.0183 (10)−0.0035 (9)
C170.0476 (12)0.0414 (10)0.0514 (12)−0.0012 (9)0.0270 (10)−0.0052 (9)
C180.0488 (13)0.0509 (12)0.0552 (13)−0.0036 (10)0.0238 (11)−0.0106 (10)
C190.0585 (15)0.0552 (13)0.0839 (19)−0.0132 (12)0.0394 (14)−0.0167 (13)
C200.081 (2)0.0564 (15)0.089 (2)−0.0128 (14)0.0530 (18)0.0000 (14)
C210.0787 (18)0.0627 (15)0.0649 (16)0.0021 (14)0.0386 (14)0.0115 (12)
C220.0537 (13)0.0528 (13)0.0548 (14)−0.0039 (10)0.0252 (11)0.0017 (10)
C230.0716 (17)0.0722 (17)0.0677 (18)0.0082 (14)0.0403 (15)0.0035 (14)
C240.075 (2)0.119 (3)0.134 (3)0.026 (2)0.040 (2)−0.042 (3)
Cl10.0772 (4)0.0366 (3)0.0688 (4)−0.0023 (3)0.0349 (3)−0.0035 (2)
N10.0473 (10)0.0404 (9)0.0491 (10)−0.0048 (8)0.0194 (8)0.0008 (7)
N20.0488 (10)0.0526 (11)0.0449 (10)−0.0100 (8)0.0153 (8)0.0012 (8)
O10.0766 (12)0.0357 (8)0.0950 (14)−0.0065 (8)0.0510 (11)−0.0048 (8)
O20.0799 (12)0.0537 (10)0.0820 (13)−0.0051 (9)0.0546 (11)0.0084 (8)
O30.196 (3)0.168 (3)0.098 (2)0.098 (3)0.065 (2)0.008 (2)
O40.0841 (15)0.1037 (17)0.0949 (17)0.0388 (13)0.0272 (13)−0.0179 (13)
C2—N11.296 (3)C13—H130.9800
C2—C31.414 (3)C14—C151.528 (3)
C2—Cl11.757 (2)C14—C231.540 (4)
C3—C41.369 (3)C14—H140.9800
C3—C131.528 (3)C15—N21.460 (3)
C4—C51.419 (3)C15—H15A0.9700
C4—H40.9300C15—H15B0.9700
C5—C101.412 (3)C16—N21.458 (3)
C5—C61.427 (3)C16—H16A0.9700
C6—C71.362 (3)C16—H16B0.9700
C6—O11.363 (3)C17—N21.384 (3)
C7—C81.413 (3)C17—C221.393 (3)
C7—H70.9300C17—C181.405 (3)
C8—C91.361 (3)C18—C191.379 (3)
C8—H80.9300C18—H180.9300
C9—O21.358 (3)C19—C201.368 (4)
C9—C101.427 (3)C19—H190.9300
C10—N11.361 (3)C20—C211.382 (4)
C11—O11.424 (3)C20—H200.9300
C11—H11A0.9600C21—C221.384 (3)
C11—H11B0.9600C21—H210.9300
C11—H11C0.9600C22—H220.9300
C12—O21.434 (3)C23—O31.190 (4)
C12—H12A0.9600C23—O41.281 (4)
C12—H12B0.9600C24—O41.439 (3)
C12—H12C0.9600C24—H24A0.9600
C13—C161.527 (3)C24—H24B0.9600
C13—C141.536 (4)C24—H24C0.9600
N1—C2—C3126.9 (2)C13—C14—H14110.4
N1—C2—Cl1114.55 (15)C23—C14—H14110.4
C3—C2—Cl1118.52 (17)N2—C15—C14105.40 (19)
C4—C3—C2114.9 (2)N2—C15—H15A110.7
C4—C3—C13123.70 (19)C14—C15—H15A110.7
C2—C3—C13121.36 (19)N2—C15—H15B110.7
C3—C4—C5121.5 (2)C14—C15—H15B110.7
C3—C4—H4119.3H15A—C15—H15B108.8
C5—C4—H4119.3N2—C16—C13104.32 (19)
C10—C5—C4117.30 (19)N2—C16—H16A110.9
C10—C5—C6119.41 (18)C13—C16—H16A110.9
C4—C5—C6123.29 (18)N2—C16—H16B110.9
C7—C6—O1125.5 (2)C13—C16—H16B110.9
C7—C6—C5119.60 (19)H16A—C16—H16B108.9
O1—C6—C5114.91 (18)N2—C17—C22120.6 (2)
C6—C7—C8120.6 (2)N2—C17—C18121.5 (2)
C6—C7—H7119.7C22—C17—C18117.8 (2)
C8—C7—H7119.7C19—C18—C17120.1 (2)
C9—C8—C7121.6 (2)C19—C18—H18120.0
C9—C8—H8119.2C17—C18—H18120.0
C7—C8—H8119.2C20—C19—C18121.8 (3)
O2—C9—C8126.0 (2)C20—C19—H19119.1
O2—C9—C10115.04 (19)C18—C19—H19119.1
C8—C9—C10118.99 (19)C19—C20—C21118.7 (2)
N1—C10—C5121.56 (18)C19—C20—H20120.6
N1—C10—C9118.70 (18)C21—C20—H20120.6
C5—C10—C9119.73 (19)C20—C21—C22120.8 (3)
O1—C11—H11A109.5C20—C21—H21119.6
O1—C11—H11B109.5C22—C21—H21119.6
H11A—C11—H11B109.5C21—C22—C17120.8 (2)
O1—C11—H11C109.5C21—C22—H22119.6
H11A—C11—H11C109.5C17—C22—H22119.6
H11B—C11—H11C109.5O3—C23—O4124.8 (3)
O2—C12—H12A109.5O3—C23—C14124.3 (3)
O2—C12—H12B109.5O4—C23—C14110.9 (2)
H12A—C12—H12B109.5O4—C24—H24A109.5
O2—C12—H12C109.5O4—C24—H24B109.5
H12A—C12—H12C109.5H24A—C24—H24B109.5
H12B—C12—H12C109.5O4—C24—H24C109.5
C16—C13—C3115.15 (19)H24A—C24—H24C109.5
C16—C13—C14103.61 (19)H24B—C24—H24C109.5
C3—C13—C14108.3 (2)C2—N1—C10117.82 (18)
C16—C13—H13109.8C17—N2—C16120.98 (18)
C3—C13—H13109.8C17—N2—C15122.38 (19)
C14—C13—H13109.8C16—N2—C15111.38 (18)
C15—C14—C13103.03 (19)C6—O1—C11117.75 (19)
C15—C14—C23110.5 (2)C9—O2—C12117.3 (2)
C13—C14—C23111.8 (2)C23—O4—C24117.5 (3)
C15—C14—H14110.4
D—H···AD—HH···AD···AD—H···A
C12—H12B···Cg1i0.962.673.601 (3)164
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C17–C22 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C12—H12BCg1i0.962.673.601 (3)164

Symmetry code: (i) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Utility of alkylaminoquinolinyl methanols as new antimalarial drugs.

Authors:  G S Dow; T N Heady; A K Bhattacharjee; D Caridha; L Gerena; M Gettayacamin; C A Lanteri; N Obaldia; N Roncal; T Shearer; P L Smith; A Tungtaeng; L Wolf; M Cabezas; D Yourick; K S Smith
Journal:  Antimicrob Agents Chemother       Date:  2006-09-11       Impact factor: 5.191

3.  Pyrrolo[3,4-c]quinoline-1,3-diones as potent caspase-3 inhibitors. Synthesis and SAR of 2-substituted 4-methyl-8-(morpholine-4-sulfonyl)-pyrrolo[3,4-c]quinoline-1,3-diones.

Authors:  Dmitri V Kravchenko; Volodymyr M Kysil; Sergey E Tkachenko; Sergey Maliarchouk; Ilya M Okun; Alexandre V Ivachtchenko
Journal:  Eur J Med Chem       Date:  2005-09-15       Impact factor: 6.514

4.  A Cycloaddition Approach toward the Synthesis of Substituted Indolines and Tetrahydroquinolines.

Authors:  Albert Padwa; Michael A. Brodney; Bing Liu; Kyosuke Satake; Tianhua Wu
Journal:  J Org Chem       Date:  1999-05-14       Impact factor: 4.354

5.  Synthesis of a novel quinoline derivative, 2-(2-methylquinolin-4-ylamino)-N-phenylacetamide--a potential antileishmanial agent.

Authors:  Niranjan P Sahu; Chiranjib Pal; Nirup B Mandal; Sukdeb Banerjee; Mausumi Raha; Ashis P Kundu; Anirban Basu; Monidipa Ghosh; Keshab Roy; Santu Bandyopadhyay
Journal:  Bioorg Med Chem       Date:  2002-06       Impact factor: 3.641

  5 in total
  4 in total

1.  2-Bromo-ethyl 2-chloro-6-methyl-quinoline-3-carboxyl-ate.

Authors:  Saida Benzerka; Abdelmalek Bouraiou; Sofiane Bouacida; Thierry Roisnel; Ali Belfaitah
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-31

2.  N-Isopropyl-6-methyl-2-phenyl-quinoline-3-carboxamide.

Authors:  Saida Benzerka; Abdelmalek Bouraiou; Sofiane Bouacida; Thierry Roisnel; Ali Belfaitah
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-18

3.  Ethyl 3-(2-chloro-5,8-dimeth-oxy-quinolin-3-yl)-2-cyano-oxirane-2-carboxyl-ate.

Authors:  Hayette Alliouche; Sofiane Bouacida; Thierry Roisnel; Ali Belfaitah
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-22

4.  5,8-Dimeth-oxy-2-phenyl-1,4-dihydro-quinoline-3-carbonitrile.

Authors:  Souheila Ladraa; Abdelmalek Bouraiou; Sofiane Bouacida; Thierry Roisnel; Ali Belfaitah
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-18
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.