Literature DB >> 21580947

(S)-N-[(1S,2S)-2-Benzyl-amino-1-(4-hy-droxy-phen-yl)-3-methyl-butyl]-1,1-di-methyl-ethane-2-sulfinamide.

Chun Shen1.   

Abstract

The title compound, C(22)H(32)N(2)O(2)S, was obtained by dehydroxy-lation and deacetyl-ation of 4-{(1S,2S)-2-(benzylhydroxy-amino)-3-methyl-1-[(S)-2-methyl-propane-2-sulfinylamino]but-yl}phenyl acetate, which was derived from reductive crosslinking of nitrone with N-tert-butane-sulfinyl-imine. The crystal structure shows that the mol-ecules are linked by O-H⋯O hydrogen bonds.

Entities:  

Year:  2008        PMID: 21580947      PMCID: PMC2959556          DOI: 10.1107/S1600536808031073

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background on optically pure vicinal diamines, see: Bennai & Hanessian (1997 ▶); Kizirian (2008 ▶). For the synthesis of the starting material, see: Zhong et al. (2004 ▶).

Experimental

Crystal data

C22H32N2O2S M = 388.56 Orthorhombic, a = 9.7503 (9) Å b = 12.1068 (11) Å c = 19.6292 (18) Å V = 2317.1 (4) Å3 Z = 4 Mo Kα radiation μ = 0.16 mm−1 T = 293 (2) K 0.45 × 0.40 × 0.29 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.783, T max = 1.000 (expected range = 0.749–0.956) 13756 measured reflections 5016 independent reflections 2765 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.130 S = 0.89 5016 reflections 261 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.16 e Å−3 Absolute structure: Flack (1983 ▶), with 2249 Friedel pairs Flack parameter: 0.01 (10) Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808031073/bv2109sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808031073/bv2109Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H32N2O2SF(000) = 840
Mr = 388.56Dx = 1.114 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2613 reflections
a = 9.7503 (9) Åθ = 4.7–40.0°
b = 12.1068 (11) ŵ = 0.16 mm1
c = 19.6292 (18) ÅT = 293 K
V = 2317.1 (4) Å3Prismatic, colourless
Z = 40.45 × 0.40 × 0.29 mm
Bruker SMART APEX CCD area-detector diffractometer5016 independent reflections
Radiation source: fine-focus sealed tube2765 reflections with I > 2σ(I)
graphiteRint = 0.038
φ and ω scansθmax = 27.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −11→12
Tmin = 0.784, Tmax = 1.000k = −14→15
13756 measured reflectionsl = −23→25
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.052H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.130w = 1/[σ2(Fo2) + (0.0628P)2] where P = (Fo2 + 2Fc2)/3
S = 0.89(Δ/σ)max = 0.001
5016 reflectionsΔρmax = 0.17 e Å3
261 parametersΔρmin = −0.16 e Å3
3 restraintsAbsolute structure: Flack (1983), with 2249 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.01 (10)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.65403 (9)0.95415 (7)0.85995 (4)0.0833 (3)
O10.7047 (3)1.29113 (19)0.61688 (11)0.0852 (7)
O20.5196 (3)0.9143 (2)0.88218 (16)0.1612 (15)
N10.7265 (3)0.8691 (2)0.80538 (11)0.0728 (7)
N20.7310 (3)0.6729 (2)0.73797 (12)0.0631 (6)
C10.6665 (3)0.8654 (2)0.73606 (12)0.0632 (7)
H10.56970.84450.73960.076*
C20.7439 (3)0.7739 (2)0.69788 (12)0.0605 (7)
H20.84120.79430.69880.073*
C30.7030 (4)0.7655 (3)0.62223 (14)0.0791 (9)
H30.70410.84110.60440.095*
C40.5602 (5)0.7234 (4)0.61216 (19)0.1376 (17)
H4A0.53160.73780.56620.206*
H4B0.49930.76020.64320.206*
H4C0.55800.64540.62060.206*
C50.8053 (5)0.7010 (3)0.58036 (15)0.1184 (14)
H5A0.89670.72290.59260.178*
H5B0.79040.71560.53290.178*
H5C0.79390.62350.58900.178*
C60.6761 (3)0.9788 (2)0.70327 (12)0.0590 (7)
C70.5600 (3)1.0341 (3)0.68355 (14)0.0728 (8)
H70.47501.00080.68980.087*
C80.5659 (3)1.1384 (3)0.65456 (15)0.0750 (8)
H80.48551.17450.64200.090*
C90.6911 (3)1.1884 (2)0.64437 (14)0.0677 (7)
C100.8081 (3)1.1331 (3)0.66348 (15)0.0777 (8)
H100.89331.16580.65680.093*
C110.7999 (3)1.0292 (3)0.69266 (14)0.0736 (8)
H110.88010.99290.70530.088*
C120.8389 (4)0.5915 (3)0.73358 (17)0.1013 (12)
H12A0.92680.62840.73750.122*
H12B0.83510.55650.68920.122*
C130.8291 (3)0.5047 (3)0.78733 (14)0.0700 (8)
C140.8323 (3)0.5296 (3)0.85489 (16)0.0841 (8)
H140.83910.60320.86800.101*
C150.8259 (4)0.4497 (4)0.90415 (16)0.1048 (11)
H150.83000.46860.95000.126*
C160.8133 (5)0.3416 (4)0.8847 (2)0.1146 (14)
H160.80850.28670.91770.138*
C170.8076 (5)0.3137 (3)0.8174 (2)0.1120 (13)
H170.79710.24040.80430.134*
C180.8176 (4)0.3956 (3)0.76973 (17)0.0913 (10)
H180.81660.37660.72380.110*
C190.7700 (5)0.9328 (3)0.93164 (15)0.1022 (13)
C200.9065 (5)0.9748 (6)0.9100 (3)0.184 (2)
H20A0.96240.98780.94950.276*
H20B0.89521.04270.88530.276*
H20C0.95020.92120.88130.276*
C210.7701 (9)0.8136 (3)0.95298 (19)0.187 (4)
H21A0.81720.77030.91940.325*
H21B0.67730.78800.95710.325*
H21C0.81580.80640.99610.325*
C220.7108 (6)1.0067 (3)0.98828 (17)0.1491 (19)
H22A0.77181.00661.02670.224*
H22B0.62280.97881.00200.224*
H22C0.70071.08070.97150.224*
H1A0.738 (3)0.8013 (15)0.8199 (13)0.065 (9)*
H2A0.651 (2)0.645 (3)0.7369 (16)0.094 (12)*
H1B0.634 (3)1.329 (3)0.614 (2)0.15 (2)*
U11U22U33U12U13U23
S10.1059 (7)0.0689 (5)0.0750 (5)−0.0119 (5)0.0166 (4)−0.0222 (4)
O10.1074 (19)0.0627 (15)0.0853 (15)0.0058 (14)0.0131 (13)0.0169 (12)
O20.135 (2)0.174 (3)0.175 (3)−0.068 (2)0.076 (2)−0.113 (2)
N10.1051 (19)0.0633 (17)0.0501 (13)0.0144 (15)0.0058 (12)0.0019 (13)
N20.0687 (18)0.0526 (15)0.0680 (15)0.0056 (13)0.0095 (12)0.0088 (12)
C10.0726 (18)0.0592 (17)0.0579 (15)0.0020 (15)−0.0025 (15)0.0007 (14)
C20.0737 (18)0.0556 (17)0.0524 (14)−0.0021 (14)0.0000 (14)0.0042 (13)
C30.119 (3)0.0614 (19)0.0570 (17)−0.0054 (19)−0.0165 (17)0.0032 (15)
C40.151 (4)0.160 (4)0.101 (3)−0.011 (3)−0.056 (3)−0.019 (3)
C50.173 (4)0.130 (3)0.0521 (17)0.028 (3)−0.003 (2)−0.018 (2)
C60.0635 (17)0.0550 (17)0.0584 (14)0.0033 (15)0.0039 (13)−0.0034 (13)
C70.072 (2)0.065 (2)0.0817 (19)0.0047 (16)0.0077 (15)0.0019 (18)
C80.082 (2)0.065 (2)0.077 (2)0.0141 (17)0.0021 (17)0.0095 (17)
C90.088 (2)0.0566 (18)0.0590 (15)0.0067 (17)0.0086 (16)−0.0019 (15)
C100.074 (2)0.070 (2)0.090 (2)−0.0025 (17)−0.0012 (17)0.0027 (18)
C110.073 (2)0.063 (2)0.0848 (19)0.0046 (16)−0.0082 (15)0.0026 (17)
C120.113 (3)0.090 (2)0.101 (2)0.036 (2)0.036 (2)0.032 (2)
C130.0714 (19)0.074 (2)0.0646 (17)0.0123 (17)0.0114 (15)0.0132 (16)
C140.094 (2)0.072 (2)0.086 (2)−0.0030 (19)0.0030 (19)−0.003 (2)
C150.142 (3)0.112 (3)0.0610 (18)−0.002 (3)0.002 (2)0.011 (2)
C160.164 (4)0.085 (3)0.094 (3)0.016 (3)0.016 (3)0.030 (2)
C170.164 (4)0.071 (2)0.101 (3)0.012 (3)0.019 (3)0.009 (2)
C180.116 (3)0.079 (3)0.079 (2)0.009 (2)0.000 (2)−0.0023 (19)
C190.181 (4)0.070 (2)0.0555 (17)−0.014 (2)−0.002 (2)−0.0059 (17)
C200.140 (4)0.283 (8)0.130 (4)−0.007 (5)−0.052 (3)−0.018 (5)
C210.309 (12)0.076 (3)0.065 (2)0.030 (4)−0.043 (4)−0.003 (2)
C220.249 (6)0.111 (3)0.087 (2)−0.012 (3)0.005 (3)−0.047 (2)
S1—O21.463 (3)C9—C101.374 (4)
S1—N11.645 (2)C10—C111.385 (4)
S1—C191.824 (4)C10—H100.9300
O1—C91.363 (3)C11—H110.9300
O1—H1B0.828 (19)C12—C131.492 (4)
N1—C11.481 (3)C12—H12A0.9700
N1—H1A0.875 (17)C12—H12B0.9700
N2—C121.443 (4)C13—C141.360 (4)
N2—C21.460 (3)C13—C181.370 (4)
N2—H2A0.847 (18)C14—C151.369 (4)
C1—C61.520 (4)C14—H140.9300
C1—C21.536 (4)C15—C161.368 (5)
C1—H10.9800C15—H150.9300
C2—C31.541 (4)C16—C171.364 (5)
C2—H20.9800C16—H160.9300
C3—C41.496 (5)C17—C181.368 (5)
C3—C51.510 (5)C17—H170.9300
C3—H30.9800C18—H180.9300
C4—H4A0.9600C19—C201.487 (6)
C4—H4B0.9600C19—C211.502 (5)
C4—H4C0.9600C19—C221.539 (5)
C5—H5A0.9600C20—H20A0.9600
C5—H5B0.9600C20—H20B0.9600
C5—H5C0.9600C20—H20C0.9600
C6—C111.368 (4)C21—H21A0.9600
C6—C71.371 (4)C21—H21B0.9600
C7—C81.386 (4)C21—H21C0.9600
C7—H70.9300C22—H22A0.9600
C8—C91.378 (4)C22—H22B0.9600
C8—H80.9300C22—H22C0.9600
O2—S1—N1111.86 (14)C9—C10—H10119.8
O2—S1—C19106.2 (2)C11—C10—H10119.8
N1—S1—C1998.49 (15)C6—C11—C10121.2 (3)
C9—O1—H1B117 (3)C6—C11—H11119.4
C1—N1—S1116.59 (19)C10—C11—H11119.4
C1—N1—H1A108.7 (18)N2—C12—C13113.1 (2)
S1—N1—H1A115.4 (18)N2—C12—H12A109.0
C12—N2—C2118.5 (2)C13—C12—H12A109.0
C12—N2—H2A114 (2)N2—C12—H12B109.0
C2—N2—H2A113 (2)C13—C12—H12B109.0
N1—C1—C6109.7 (2)H12A—C12—H12B107.8
N1—C1—C2106.0 (2)C14—C13—C18117.5 (3)
C6—C1—C2114.5 (2)C14—C13—C12122.1 (3)
N1—C1—H1108.8C18—C13—C12120.4 (3)
C6—C1—H1108.8C13—C14—C15122.1 (3)
C2—C1—H1108.8C13—C14—H14119.0
N2—C2—C1107.4 (2)C15—C14—H14119.0
N2—C2—C3116.2 (2)C16—C15—C14118.8 (3)
C1—C2—C3113.0 (2)C16—C15—H15120.6
N2—C2—H2106.5C14—C15—H15120.6
C1—C2—H2106.5C17—C16—C15120.7 (3)
C3—C2—H2106.5C17—C16—H16119.6
C4—C3—C5111.5 (3)C15—C16—H16119.6
C4—C3—C2113.0 (3)C16—C17—C18118.7 (4)
C5—C3—C2112.8 (3)C16—C17—H17120.7
C4—C3—H3106.3C18—C17—H17120.7
C5—C3—H3106.3C17—C18—C13122.2 (3)
C2—C3—H3106.3C17—C18—H18118.9
C3—C4—H4A109.5C13—C18—H18118.9
C3—C4—H4B109.5C20—C19—C21114.1 (5)
H4A—C4—H4B109.5C20—C19—C22110.1 (4)
C3—C4—H4C109.5C21—C19—C22110.9 (3)
H4A—C4—H4C109.5C20—C19—S1106.6 (3)
H4B—C4—H4C109.5C21—C19—S1110.6 (3)
C3—C5—H5A109.5C22—C19—S1104.0 (3)
C3—C5—H5B109.5C19—C20—H20A109.5
H5A—C5—H5B109.5C19—C20—H20B109.5
C3—C5—H5C109.5H20A—C20—H20B109.5
H5A—C5—H5C109.5C19—C20—H20C109.5
H5B—C5—H5C109.5H20A—C20—H20C109.5
C11—C6—C7117.9 (3)H20B—C20—H20C109.5
C11—C6—C1121.4 (3)C19—C21—H21A109.5
C7—C6—C1120.7 (3)C19—C21—H21B109.5
C6—C7—C8121.8 (3)H21A—C21—H21B109.5
C6—C7—H7119.1C19—C21—H21C109.5
C8—C7—H7119.1H21A—C21—H21C109.5
C9—C8—C7119.8 (3)H21B—C21—H21C109.5
C9—C8—H8120.1C19—C22—H22A109.5
C7—C8—H8120.1C19—C22—H22B109.5
O1—C9—C10118.2 (3)H22A—C22—H22B109.5
O1—C9—C8123.0 (3)C19—C22—H22C109.5
C10—C9—C8118.8 (3)H22A—C22—H22C109.5
C9—C10—C11120.5 (3)H22B—C22—H22C109.5
O2—S1—N1—C172.0 (3)O1—C9—C10—C11179.0 (2)
C19—S1—N1—C1−176.7 (2)C8—C9—C10—C11−0.2 (4)
S1—N1—C1—C660.5 (3)C7—C6—C11—C100.6 (4)
S1—N1—C1—C2−175.33 (19)C1—C6—C11—C10−179.2 (2)
C12—N2—C2—C1−151.5 (3)C9—C10—C11—C6−0.1 (5)
C12—N2—C2—C380.9 (4)C2—N2—C12—C13167.6 (3)
N1—C1—C2—N255.6 (3)N2—C12—C13—C14−59.0 (5)
C6—C1—C2—N2176.7 (2)N2—C12—C13—C18121.6 (4)
N1—C1—C2—C3−174.9 (2)C18—C13—C14—C150.7 (5)
C6—C1—C2—C3−53.8 (3)C12—C13—C14—C15−178.8 (3)
N2—C2—C3—C455.6 (4)C13—C14—C15—C16−1.2 (6)
C1—C2—C3—C4−69.3 (4)C14—C15—C16—C170.2 (7)
N2—C2—C3—C5−72.1 (4)C15—C16—C17—C181.3 (7)
C1—C2—C3—C5163.1 (3)C16—C17—C18—C13−1.9 (6)
N1—C1—C6—C1160.3 (3)C14—C13—C18—C170.9 (5)
C2—C1—C6—C11−58.7 (3)C12—C13—C18—C17−179.6 (3)
N1—C1—C6—C7−119.5 (3)O2—S1—C19—C20−179.0 (3)
C2—C1—C6—C7121.5 (3)N1—S1—C19—C2065.2 (3)
C11—C6—C7—C8−0.9 (4)O2—S1—C19—C2156.4 (4)
C1—C6—C7—C8178.9 (2)N1—S1—C19—C21−59.4 (4)
C6—C7—C8—C90.6 (4)O2—S1—C19—C22−62.7 (3)
C7—C8—C9—O1−179.2 (3)N1—S1—C19—C22−178.5 (3)
C7—C8—C9—C10−0.1 (4)
D—H···AD—HH···AD···AD—H···A
O1—H1B···O2i0.83 (2)1.82 (2)2.647 (4)173 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1B⋯O2i0.828 (19)1.82 (2)2.647 (4)173 (5)

Symmetry code: (i) .

  4 in total

1.  trans-1,2-Diaminocyclohexane Derivatives as Chiral Reagents, Scaffolds, and Ligands for Catalysis: Applications in Asymmetric Synthesis and Molecular Recognition.

Authors:  Youssef L. Bennani; Stephen Hanessian
Journal:  Chem Rev       Date:  1997-12-18       Impact factor: 60.622

2.  Chiral tertiary diamines in asymmetric synthesis.

Authors:  Jean-Claude Kizirian
Journal:  Chem Rev       Date:  2007-12-15       Impact factor: 60.622

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Samarium diiodide-induced asymmetric synthesis of optically pure unsymmetrical vicinal diamines by reductive cross-coupling of nitrones with N-tert-butanesulfinyl imines.

Authors:  Yu-Wu Zhong; Ming-Hua Xu; Guo-Qiang Lin
Journal:  Org Lett       Date:  2004-10-28       Impact factor: 6.005

  4 in total

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