Literature DB >> 21580932

3-(Benzimidazolium-2-yl)propionate dihydrate.

Xin Xiao, Yun-Qiang Zhang, Sai-Feng Xue, Zhu Tao.   

Abstract

In the crystal struture of the title compound, C(10)H(10)N(2)O(2)·2H(2)O, the component species are linked to the water mol-ecules by N-H⋯O and O-H⋯O hydrogen bonds to form a three-dimensional network structure.

Entities:  

Year:  2008        PMID: 21580932      PMCID: PMC2959715          DOI: 10.1107/S1600536808031346

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Day & Arnold (2000 ▶); Day et al. (2002 ▶); Freeman et al. (1981 ▶); Kim et al. (2000 ▶). For related structure, see: Ge et al. (2007 ▶).

Experimental

Crystal data

C10H10N2O2·2H2O M = 226.23 Monoclinic, a = 18.444 (3) Å b = 4.9730 (8) Å c = 11.9097 (19) Å β = 94.530 (5)° V = 1089.0 (3) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 273 (2) K 0.29 × 0.26 × 0.20 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: none 7787 measured reflections 2002 independent reflections 1394 reflections with I > 2σ(I) R int = 0.066

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.113 S = 1.08 1971 reflections 161 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808031346/ng2490sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808031346/ng2490Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H10N2O2·2H2OF(000) = 480
Mr = 226.23Dx = 1.380 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2002 reflections
a = 18.444 (3) Åθ = 1.1–25.4°
b = 4.9730 (8) ŵ = 0.11 mm1
c = 11.9097 (19) ÅT = 273 K
β = 94.530 (5)°Prism, colourless
V = 1089.0 (3) Å30.29 × 0.26 × 0.20 mm
Z = 4
Bruker CCD area-detector diffractometer1394 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.066
graphiteθmax = 25.4°, θmin = 1.1°
φ and ω scansh = −21→19
7787 measured reflectionsk = −5→4
2002 independent reflectionsl = −13→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.113H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0354P)2 + 0.5171P] where P = (Fo2 + 2Fc2)/3
1971 reflections(Δ/σ)max < 0.001
161 parametersΔρmax = 0.19 e Å3
6 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.24941 (9)0.3021 (3)0.56604 (13)0.0306 (5)
O20.31408 (9)0.3485 (3)0.41718 (12)0.0285 (4)
O1W0.45721 (11)0.3587 (4)0.36594 (15)0.0360 (5)
O2W0.52898 (12)−0.1307 (4)0.37002 (17)0.0398 (5)
N10.22255 (10)0.8913 (4)0.70511 (15)0.0249 (5)
H1N0.22961.00210.65160.030*
N20.23986 (10)0.5625 (4)0.82389 (15)0.0241 (5)
H2N0.25950.42660.85910.029*
C10.12302 (14)0.6171 (5)0.92071 (19)0.0290 (6)
H1A0.13030.47750.97230.035*
C20.06132 (14)0.7751 (5)0.9168 (2)0.0331 (7)
H2A0.02640.74170.96730.040*
C30.04988 (14)0.9848 (5)0.8385 (2)0.0334 (7)
H3A0.00741.08580.83800.040*
C40.09993 (13)1.0447 (5)0.7624 (2)0.0300 (6)
H4A0.09241.18380.71070.036*
C50.16226 (13)0.8870 (5)0.76689 (18)0.0237 (6)
C60.17353 (13)0.6765 (5)0.84417 (18)0.0238 (6)
C70.26826 (13)0.6960 (5)0.74162 (18)0.0234 (6)
C80.34047 (13)0.6448 (5)0.69974 (18)0.0264 (6)
H8A0.35820.47240.72850.032*
H8B0.37410.78160.72990.032*
C90.34097 (13)0.6433 (5)0.57180 (18)0.0252 (6)
H9A0.32070.81150.54250.030*
H9B0.39090.63340.55210.030*
C100.29840 (13)0.4120 (5)0.51556 (18)0.0227 (6)
H1W10.4133 (12)0.352 (7)0.386 (3)0.084 (13)*
H1W20.4755 (16)0.208 (4)0.384 (3)0.059 (11)*
H2W10.5341 (16)−0.149 (6)0.3009 (16)0.053 (9)*
H2W20.5073 (19)−0.268 (5)0.387 (3)0.089 (14)*
U11U22U33U12U13U23
O10.0340 (10)0.0248 (10)0.0334 (9)−0.0060 (8)0.0054 (8)0.0027 (8)
O20.0334 (10)0.0268 (10)0.0255 (8)−0.0038 (8)0.0042 (8)−0.0056 (7)
O1W0.0374 (13)0.0303 (12)0.0416 (11)−0.0013 (10)0.0106 (10)−0.0001 (9)
O2W0.0486 (13)0.0315 (12)0.0399 (11)−0.0038 (11)0.0079 (10)−0.0010 (10)
N10.0311 (12)0.0209 (12)0.0230 (9)−0.0003 (10)0.0032 (9)0.0034 (9)
N20.0290 (12)0.0205 (12)0.0225 (9)0.0022 (10)0.0013 (9)0.0013 (8)
C10.0336 (15)0.0257 (15)0.0281 (12)−0.0059 (13)0.0043 (11)−0.0011 (11)
C20.0315 (15)0.0340 (16)0.0348 (14)−0.0053 (13)0.0090 (12)−0.0058 (12)
C30.0292 (15)0.0272 (15)0.0438 (15)0.0027 (13)0.0035 (13)−0.0062 (13)
C40.0309 (15)0.0231 (15)0.0354 (13)0.0009 (12)−0.0006 (12)−0.0010 (11)
C50.0267 (14)0.0194 (14)0.0248 (11)−0.0044 (11)0.0016 (11)−0.0032 (10)
C60.0268 (14)0.0198 (13)0.0248 (12)−0.0005 (11)0.0010 (11)−0.0029 (10)
C70.0289 (14)0.0202 (13)0.0206 (11)−0.0035 (12)−0.0004 (10)−0.0045 (10)
C80.0240 (14)0.0271 (15)0.0279 (12)−0.0009 (12)0.0006 (11)−0.0011 (11)
C90.0289 (14)0.0208 (14)0.0264 (12)−0.0028 (12)0.0049 (11)0.0005 (11)
C100.0257 (14)0.0167 (13)0.0256 (12)0.0048 (11)0.0012 (11)0.0050 (10)
O1—C101.250 (3)C2—C31.404 (4)
O2—C101.269 (3)C2—H2A0.9300
O1W—H1W10.863 (18)C3—C41.376 (3)
O1W—H1W20.845 (18)C3—H3A0.9300
O2W—H2W10.841 (17)C4—C51.389 (3)
O2W—H2W20.823 (18)C4—H4A0.9300
N1—C71.336 (3)C5—C61.399 (3)
N1—C51.381 (3)C7—C81.481 (3)
N1—H1N0.8600C8—C91.525 (3)
N2—C71.325 (3)C8—H8A0.9700
N2—C61.387 (3)C8—H8B0.9700
N2—H2N0.8600C9—C101.518 (3)
C1—C21.380 (3)C9—H9A0.9700
C1—C61.386 (3)C9—H9B0.9700
C1—H1A0.9300
H1W1—O1W—H1W2105 (3)C4—C5—C6121.8 (2)
H2W1—O2W—H2W2104 (3)C1—C6—N2132.5 (2)
C7—N1—C5109.22 (19)C1—C6—C5121.3 (2)
C7—N1—H1N125.4N2—C6—C5106.2 (2)
C5—N1—H1N125.4N2—C7—N1109.2 (2)
C7—N2—C6109.2 (2)N2—C7—C8125.6 (2)
C7—N2—H2N125.4N1—C7—C8125.2 (2)
C6—N2—H2N125.4C7—C8—C9114.5 (2)
C2—C1—C6116.9 (2)C7—C8—H8A108.6
C2—C1—H1A121.6C9—C8—H8A108.6
C6—C1—H1A121.6C7—C8—H8B108.6
C1—C2—C3121.7 (2)C9—C8—H8B108.6
C1—C2—H2A119.2H8A—C8—H8B107.6
C3—C2—H2A119.2C10—C9—C8113.63 (19)
C4—C3—C2121.6 (2)C10—C9—H9A108.8
C4—C3—H3A119.2C8—C9—H9A108.8
C2—C3—H3A119.2C10—C9—H9B108.8
C3—C4—C5116.7 (2)C8—C9—H9B108.8
C3—C4—H4A121.7H9A—C9—H9B107.7
C5—C4—H4A121.7O1—C10—O2124.2 (2)
N1—C5—C4132.0 (2)O1—C10—C9119.2 (2)
N1—C5—C6106.1 (2)O2—C10—C9116.6 (2)
C6—C1—C2—C30.5 (4)C4—C5—C6—C1−0.5 (3)
C1—C2—C3—C4−0.6 (4)N1—C5—C6—N2−0.7 (2)
C2—C3—C4—C50.1 (4)C4—C5—C6—N2179.2 (2)
C7—N1—C5—C4−179.9 (2)C6—N2—C7—N1−1.2 (3)
C7—N1—C5—C60.0 (2)C6—N2—C7—C8176.5 (2)
C3—C4—C5—N1−179.6 (2)C5—N1—C7—N20.7 (2)
C3—C4—C5—C60.4 (3)C5—N1—C7—C8−177.0 (2)
C2—C1—C6—N2−179.6 (2)N2—C7—C8—C9135.7 (2)
C2—C1—C6—C50.1 (3)N1—C7—C8—C9−47.0 (3)
C7—N2—C6—C1−179.1 (2)C7—C8—C9—C10−66.3 (3)
C7—N2—C6—C51.2 (2)C8—C9—C10—O123.1 (3)
N1—C5—C6—C1179.5 (2)C8—C9—C10—O2−159.0 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O1i0.861.862.700 (2)166
N2—H2N···O2ii0.861.802.654 (3)170
O2W—H2W1···O1Wiii0.84 (2)2.01 (2)2.842 (3)172 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O1i0.861.862.700 (2)166
N2—H2N⋯O2ii0.861.802.654 (3)170
O2W—H2W1⋯O1Wiii0.841 (17)2.007 (18)2.842 (3)172 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

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