Literature DB >> 21580924

4,4'-Bipyridine-cyano-acetic acid (1/2).

Ge Song1, Er-Jun Hao, Wei Li.   

Abstract

Crystals of the title adduct, C(10)H(8)N(2)·2C(3)H(3)NO(2), were obtained from a methanol/water solution of cyano-acetic acid and 4,4'-bipyridine at room temperature. In the crystal structure, cyano-acetic acid and centrosymmetric 4,4'-bipyridine mol-ecules are linked by O-H⋯N hydrogen bonds to form three-component supra-molecular adducts. The acidic H atom is almost midway between the O and N atoms of the cyano-acetic acid and bipyridine mol-ecules, with O-H and N-H distances of 1.19 (3) and 1.39 (3) Å, respectively, so that the H-atom transfer is best regarded as partial. The three-component adducts are further inter-connected with neighboring mol-ecules by weak inter-molecular C-H⋯O and C-H⋯N hydrogen bonds and by π-π stacking inter-actions [centroid-centroid distance = 3.7200 (11) Å] to generate a three-dimensional supra-molecular structure.

Entities:  

Year:  2008        PMID: 21580924      PMCID: PMC2959634          DOI: 10.1107/S1600536808031322

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For similar partial proton transfer from a carbonic acid towards a nitro­gen base, see: Farrell et al. (2002a ▶,b ▶); For C—H⋯O and C—H⋯N hydrogen bonds, see: Balakrishna et al. (2005 ▶); Wang et al. (2008 ▶).

Experimental

Crystal data

C10H8N2·2C3H3NO2 M = 326.31 Monoclinic, a = 4.887 (2) Å b = 21.383 (10) Å c = 7.921 (4) Å β = 100.664 (8)° V = 813.4 (7) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 291 (2) K 0.34 × 0.26 × 0.19 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1997 ▶) T min = 0.952, T max = 0.982 3537 measured reflections 1487 independent reflections 1153 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.133 S = 1.04 1487 reflections 112 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.15 e Å−3 Δρmin = −0.15 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808031322/zl2142sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808031322/zl2142Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H8N2·2C3H3NO2F(000) = 340
Mr = 326.31Dx = 1.332 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 4.887 (2) ÅCell parameters from 1445 reflections
b = 21.383 (10) Åθ = 2.8–27.1°
c = 7.921 (4) ŵ = 0.10 mm1
β = 100.664 (8)°T = 291 K
V = 813.4 (7) Å3Block, colorless
Z = 20.34 × 0.26 × 0.19 mm
Bruker SMART CCD area-detector diffractometer1487 independent reflections
Radiation source: fine-focus sealed tube1153 reflections with I > 2σ(I)
graphiteRint = 0.031
φ and ω scansθmax = 25.5°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Bruker, 1997)h = −5→5
Tmin = 0.952, Tmax = 0.982k = −25→24
3537 measured reflectionsl = −9→7
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.133H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0577P)2 + 0.1963P] where P = (Fo2 + 2Fc2)/3
1487 reflections(Δ/σ)max < 0.001
112 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.15 e Å3
xyzUiso*/Ueq
O10.9569 (3)0.33450 (7)0.35022 (19)0.0763 (5)
H1D0.779 (6)0.3714 (12)0.298 (3)0.114*
O21.0674 (4)0.40335 (8)0.5596 (2)0.1022 (6)
N10.5590 (3)0.40726 (7)0.21445 (19)0.0595 (4)
N21.4242 (5)0.21975 (10)0.3693 (3)0.1017 (7)
C10.3898 (4)0.38664 (9)0.0757 (3)0.0729 (6)
H10.41960.34680.03540.087*
C20.1717 (4)0.42138 (9)−0.0118 (3)0.0682 (6)
H20.06040.4052−0.11000.082*
C30.1174 (3)0.48036 (7)0.04596 (19)0.0464 (4)
C40.2939 (4)0.50109 (9)0.1930 (2)0.0652 (5)
H40.26620.54020.23840.078*
C50.5109 (4)0.46370 (9)0.2722 (2)0.0685 (6)
H50.62780.47870.37000.082*
C61.1058 (4)0.35458 (9)0.4903 (2)0.0598 (5)
C71.3428 (4)0.31156 (10)0.5682 (3)0.0707 (6)
H7A1.51250.33600.59550.085*
H7B1.30380.29480.67500.085*
C81.3896 (4)0.25990 (10)0.4580 (3)0.0699 (6)
U11U22U33U12U13U23
O10.0708 (9)0.0714 (9)0.0772 (9)0.0193 (7)−0.0112 (7)−0.0097 (7)
O20.1424 (17)0.0813 (11)0.0760 (11)0.0340 (11)0.0021 (10)−0.0164 (8)
N10.0558 (9)0.0595 (9)0.0611 (9)0.0096 (7)0.0053 (7)0.0059 (7)
N20.1006 (16)0.0809 (13)0.1175 (17)0.0300 (12)0.0043 (13)−0.0100 (12)
C10.0752 (14)0.0532 (11)0.0818 (14)0.0146 (9)−0.0073 (11)−0.0079 (9)
C20.0700 (13)0.0540 (10)0.0708 (12)0.0087 (9)−0.0122 (10)−0.0092 (9)
C30.0465 (9)0.0460 (8)0.0468 (8)0.0003 (7)0.0088 (7)0.0027 (7)
C40.0685 (12)0.0620 (11)0.0592 (11)0.0143 (9)−0.0038 (9)−0.0121 (8)
C50.0663 (13)0.0744 (12)0.0583 (11)0.0123 (10)−0.0051 (9)−0.0077 (9)
C60.0676 (12)0.0595 (10)0.0536 (10)0.0058 (9)0.0143 (9)0.0026 (8)
C70.0672 (13)0.0827 (13)0.0586 (11)0.0084 (10)0.0025 (9)0.0020 (9)
C80.0613 (12)0.0669 (12)0.0773 (14)0.0145 (10)0.0021 (10)0.0099 (10)
O1—C61.283 (2)C3—C41.388 (2)
O1—H1D1.19 (3)C3—C3i1.498 (3)
O2—C61.209 (2)C4—C51.382 (3)
N1—C11.323 (2)C4—H40.9300
N1—C51.327 (2)C5—H50.9300
N2—C81.142 (3)C6—C71.518 (3)
C1—C21.377 (3)C7—C81.452 (3)
C1—H10.9300C7—H7A0.9700
C2—C31.384 (2)C7—H7B0.9700
C2—H20.9300
C6—O1—H1D109.8 (12)C5—C4—H4119.9
C1—N1—C5117.80 (16)C3—C4—H4119.9
C1—N1—H1D121.6 (10)N1—C5—C4122.65 (17)
C5—N1—H1D120.6 (10)N1—C5—H5118.7
C1—N1—H1D121.6 (10)C4—C5—H5118.7
C5—N1—H1D120.6 (10)O2—C6—O1124.78 (19)
N1—C1—C2123.03 (18)O2—C6—C7120.59 (19)
N1—C1—H1118.5O1—C6—C7114.63 (17)
C2—C1—H1118.5C8—C7—C6114.18 (17)
C1—C2—C3120.22 (18)C8—C7—H7A108.7
C1—C2—H2119.9C6—C7—H7A108.7
C3—C2—H2119.9C8—C7—H7B108.7
C2—C3—C4116.19 (16)C6—C7—H7B108.7
C2—C3—C3i121.79 (18)H7A—C7—H7B107.6
C4—C3—C3i122.02 (18)N2—C8—C7179.0 (2)
C5—C4—C3120.11 (17)
C5—N1—C1—C21.2 (3)C3i—C3—C4—C5−178.96 (19)
H1D—N1—C1—C2−179.1 (12)C1—N1—C5—C4−0.3 (3)
N1—C1—C2—C3−1.2 (3)H1D—N1—C5—C4−180.0 (12)
C1—C2—C3—C40.2 (3)C3—C4—C5—N1−0.7 (3)
C1—C2—C3—C3i179.8 (2)O2—C6—C7—C8−170.9 (2)
C2—C3—C4—C50.7 (3)O1—C6—C7—C89.4 (3)
D—H···AD—HH···AD···AD—H···A
C7—H7A···N2ii0.972.923.420 (3)113
C2—H2···O2iii0.932.623.361 (3)137
C2—H2···N2iv0.932.753.322 (3)121
O1—H1D···N11.19 (3)1.39 (3)2.566 (2)170 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7A⋯N2i0.972.923.420 (3)113
C2—H2⋯O2ii0.932.623.361 (3)137
C2—H2⋯N2iii0.932.753.322 (3)121
O1—H1D⋯N11.19 (3)1.39 (3)2.566 (2)170 (2)

Symmetry codes: (i) ; (ii) ; (iii) .

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