| Literature DB >> 21580924 |
Ge Song1, Er-Jun Hao, Wei Li.
Abstract
Crystals of the title adduct, C(10)H(8)N(2)·2C(3)H(3)NO(2), were obtained from a methanol/water solution of cyano-acetic acid and 4,4'-bipyridine at room temperature. In the crystal structure, cyano-acetic acid and centrosymmetric 4,4'-bipyridine mol-ecules are linked by O-H⋯N hydrogen bonds to form three-component supra-molecular adducts. The acidic H atom is almost midway between the O and N atoms of the cyano-acetic acid and bipyridine mol-ecules, with O-H and N-H distances of 1.19 (3) and 1.39 (3) Å, respectively, so that the H-atom transfer is best regarded as partial. The three-component adducts are further inter-connected with neighboring mol-ecules by weak inter-molecular C-H⋯O and C-H⋯N hydrogen bonds and by π-π stacking inter-actions [centroid-centroid distance = 3.7200 (11) Å] to generate a three-dimensional supra-molecular structure.Entities:
Year: 2008 PMID: 21580924 PMCID: PMC2959634 DOI: 10.1107/S1600536808031322
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H8N2·2C3H3NO2 | |
| Monoclinic, | Mo |
| Cell parameters from 1445 reflections | |
| θ = 2.8–27.1° | |
| µ = 0.10 mm−1 | |
| β = 100.664 (8)° | |
| Block, colorless | |
| 0.34 × 0.26 × 0.19 mm |
| Bruker SMART CCD area-detector diffractometer | 1487 independent reflections |
| Radiation source: fine-focus sealed tube | 1153 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.5°, θmin = 2.8° |
| Absorption correction: multi-scan (SADABS; Bruker, 1997) | |
| 3537 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1487 reflections | (Δ/σ)max < 0.001 |
| 112 parameters | Δρmax = 0.16 e Å−3 |
| 0 restraints | Δρmin = −0.15 e Å−3 |
| O1 | 0.9569 (3) | 0.33450 (7) | 0.35022 (19) | 0.0763 (5) | |
| H1D | 0.779 (6) | 0.3714 (12) | 0.298 (3) | 0.114* | |
| O2 | 1.0674 (4) | 0.40335 (8) | 0.5596 (2) | 0.1022 (6) | |
| N1 | 0.5590 (3) | 0.40726 (7) | 0.21445 (19) | 0.0595 (4) | |
| N2 | 1.4242 (5) | 0.21975 (10) | 0.3693 (3) | 0.1017 (7) | |
| C1 | 0.3898 (4) | 0.38664 (9) | 0.0757 (3) | 0.0729 (6) | |
| H1 | 0.4196 | 0.3468 | 0.0354 | 0.087* | |
| C2 | 0.1717 (4) | 0.42138 (9) | −0.0118 (3) | 0.0682 (6) | |
| H2 | 0.0604 | 0.4052 | −0.1100 | 0.082* | |
| C3 | 0.1174 (3) | 0.48036 (7) | 0.04596 (19) | 0.0464 (4) | |
| C4 | 0.2939 (4) | 0.50109 (9) | 0.1930 (2) | 0.0652 (5) | |
| H4 | 0.2662 | 0.5402 | 0.2384 | 0.078* | |
| C5 | 0.5109 (4) | 0.46370 (9) | 0.2722 (2) | 0.0685 (6) | |
| H5 | 0.6278 | 0.4787 | 0.3700 | 0.082* | |
| C6 | 1.1058 (4) | 0.35458 (9) | 0.4903 (2) | 0.0598 (5) | |
| C7 | 1.3428 (4) | 0.31156 (10) | 0.5682 (3) | 0.0707 (6) | |
| H7A | 1.5125 | 0.3360 | 0.5955 | 0.085* | |
| H7B | 1.3038 | 0.2948 | 0.6750 | 0.085* | |
| C8 | 1.3896 (4) | 0.25990 (10) | 0.4580 (3) | 0.0699 (6) |
| O1 | 0.0708 (9) | 0.0714 (9) | 0.0772 (9) | 0.0193 (7) | −0.0112 (7) | −0.0097 (7) |
| O2 | 0.1424 (17) | 0.0813 (11) | 0.0760 (11) | 0.0340 (11) | 0.0021 (10) | −0.0164 (8) |
| N1 | 0.0558 (9) | 0.0595 (9) | 0.0611 (9) | 0.0096 (7) | 0.0053 (7) | 0.0059 (7) |
| N2 | 0.1006 (16) | 0.0809 (13) | 0.1175 (17) | 0.0300 (12) | 0.0043 (13) | −0.0100 (12) |
| C1 | 0.0752 (14) | 0.0532 (11) | 0.0818 (14) | 0.0146 (9) | −0.0073 (11) | −0.0079 (9) |
| C2 | 0.0700 (13) | 0.0540 (10) | 0.0708 (12) | 0.0087 (9) | −0.0122 (10) | −0.0092 (9) |
| C3 | 0.0465 (9) | 0.0460 (8) | 0.0468 (8) | 0.0003 (7) | 0.0088 (7) | 0.0027 (7) |
| C4 | 0.0685 (12) | 0.0620 (11) | 0.0592 (11) | 0.0143 (9) | −0.0038 (9) | −0.0121 (8) |
| C5 | 0.0663 (13) | 0.0744 (12) | 0.0583 (11) | 0.0123 (10) | −0.0051 (9) | −0.0077 (9) |
| C6 | 0.0676 (12) | 0.0595 (10) | 0.0536 (10) | 0.0058 (9) | 0.0143 (9) | 0.0026 (8) |
| C7 | 0.0672 (13) | 0.0827 (13) | 0.0586 (11) | 0.0084 (10) | 0.0025 (9) | 0.0020 (9) |
| C8 | 0.0613 (12) | 0.0669 (12) | 0.0773 (14) | 0.0145 (10) | 0.0021 (10) | 0.0099 (10) |
| O1—C6 | 1.283 (2) | C3—C4 | 1.388 (2) |
| O1—H1D | 1.19 (3) | C3—C3i | 1.498 (3) |
| O2—C6 | 1.209 (2) | C4—C5 | 1.382 (3) |
| N1—C1 | 1.323 (2) | C4—H4 | 0.9300 |
| N1—C5 | 1.327 (2) | C5—H5 | 0.9300 |
| N2—C8 | 1.142 (3) | C6—C7 | 1.518 (3) |
| C1—C2 | 1.377 (3) | C7—C8 | 1.452 (3) |
| C1—H1 | 0.9300 | C7—H7A | 0.9700 |
| C2—C3 | 1.384 (2) | C7—H7B | 0.9700 |
| C2—H2 | 0.9300 | ||
| C6—O1—H1D | 109.8 (12) | C5—C4—H4 | 119.9 |
| C1—N1—C5 | 117.80 (16) | C3—C4—H4 | 119.9 |
| C1—N1—H1D | 121.6 (10) | N1—C5—C4 | 122.65 (17) |
| C5—N1—H1D | 120.6 (10) | N1—C5—H5 | 118.7 |
| C1—N1—H1D | 121.6 (10) | C4—C5—H5 | 118.7 |
| C5—N1—H1D | 120.6 (10) | O2—C6—O1 | 124.78 (19) |
| N1—C1—C2 | 123.03 (18) | O2—C6—C7 | 120.59 (19) |
| N1—C1—H1 | 118.5 | O1—C6—C7 | 114.63 (17) |
| C2—C1—H1 | 118.5 | C8—C7—C6 | 114.18 (17) |
| C1—C2—C3 | 120.22 (18) | C8—C7—H7A | 108.7 |
| C1—C2—H2 | 119.9 | C6—C7—H7A | 108.7 |
| C3—C2—H2 | 119.9 | C8—C7—H7B | 108.7 |
| C2—C3—C4 | 116.19 (16) | C6—C7—H7B | 108.7 |
| C2—C3—C3i | 121.79 (18) | H7A—C7—H7B | 107.6 |
| C4—C3—C3i | 122.02 (18) | N2—C8—C7 | 179.0 (2) |
| C5—C4—C3 | 120.11 (17) | ||
| C5—N1—C1—C2 | 1.2 (3) | C3i—C3—C4—C5 | −178.96 (19) |
| H1D—N1—C1—C2 | −179.1 (12) | C1—N1—C5—C4 | −0.3 (3) |
| N1—C1—C2—C3 | −1.2 (3) | H1D—N1—C5—C4 | −180.0 (12) |
| C1—C2—C3—C4 | 0.2 (3) | C3—C4—C5—N1 | −0.7 (3) |
| C1—C2—C3—C3i | 179.8 (2) | O2—C6—C7—C8 | −170.9 (2) |
| C2—C3—C4—C5 | 0.7 (3) | O1—C6—C7—C8 | 9.4 (3) |
| H··· | ||||
| C7—H7A···N2ii | 0.97 | 2.92 | 3.420 (3) | 113 |
| C2—H2···O2iii | 0.93 | 2.62 | 3.361 (3) | 137 |
| C2—H2···N2iv | 0.93 | 2.75 | 3.322 (3) | 121 |
| O1—H1D···N1 | 1.19 (3) | 1.39 (3) | 2.566 (2) | 170 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C7—H7 | 0.97 | 2.92 | 3.420 (3) | 113 |
| C2—H2⋯O2ii | 0.93 | 2.62 | 3.361 (3) | 137 |
| C2—H2⋯N2iii | 0.93 | 2.75 | 3.322 (3) | 121 |
| O1—H1 | 1.19 (3) | 1.39 (3) | 2.566 (2) | 170 (2) |
Symmetry codes: (i) ; (ii) ; (iii) .