Literature DB >> 21580917

(Z)-4-[3-(3-Oxoquinuclidin-2-ylidene-meth-yl)-1H-indol-1-ylmeth-yl]benzo-nitrile.

Thirupathi Reddy Yerram Reddy, Narsimha Reddy Penthala, Sean Parkin, Peter A Crooks.   

Abstract

The title compound, C(24)H(21)N(3)O, was prepared by the reaction of (Z)-2-(1H-indol-3-ylmethyl-ene)-1-aza-bicyclo-[2.2.2]octan-3-one with α-bromo-p-toluonitrile, under phase-transfer catalytic (PTC) conditions using triethyl-benzyl-ammonium chloride and 50% w/v aqueous NaOH solution in dichloro-methane. The crystal structure indicates the presence of a double bond with Z geometry connecting the aza-bicyclic and indole groups.

Entities:  

Year:  2008        PMID: 21580917      PMCID: PMC2959535          DOI: 10.1107/S1600536808030006

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Mason et al. (2003 ▶); Zarza et al. (1988 ▶). For related bond angles, see: Wilson (1992 ▶). For related literature, see: Sekhar et al. (2003 ▶); Sonar et al. (2007 ▶).

Experimental

Crystal data

C24H21N3O M = 367.44 Triclinic, a = 9.0627 (2) Å b = 10.7959 (3) Å c = 11.6969 (4) Å α = 99.1571 (13)° β = 106.0935 (14)° γ = 113.7908 (14)° V = 957.16 (5) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 90.0 (2) K 0.44 × 0.40 × 0.25 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (SCALEPACK; Otwinowski & Minor, 1997 ▶) T min = 0.966, T max = 0.980 20970 measured reflections 4385 independent reflections 2935 reflections with I > 2σ(I) R int = 0.054

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.128 S = 1.04 4385 reflections 253 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.21 e Å−3 Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO-SMN (Otwinowski & Minor, 1997 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELX97 and local procedures. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808030006/om2261sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808030006/om2261Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H21N3OZ = 2
Mr = 367.44F(000) = 388
Triclinic, P1Dx = 1.275 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.0627 (2) ÅCell parameters from 4341 reflections
b = 10.7959 (3) Åθ = 1.0–27.5°
c = 11.6969 (4) ŵ = 0.08 mm1
α = 99.1571 (13)°T = 90 K
β = 106.0935 (14)°Irregular block, colourless
γ = 113.7908 (14)°0.44 × 0.40 × 0.25 mm
V = 957.16 (5) Å3
Nonius KappaCCD diffractometer4385 independent reflections
Radiation source: fine-focus sealed tube2935 reflections with I > 2σ(I)
graphiteRint = 0.054
Detector resolution: 18 pixels mm-1θmax = 27.5°, θmin = 1.9°
ω scans at fixed χ = 55°h = −11→11
Absorption correction: multi-scan (SCALEPACK; Otwinowski & Minor, 1997)k = −14→13
Tmin = 0.966, Tmax = 0.980l = 0→15
20970 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.128H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0661P)2 + 0.0538P] where P = (Fo2 + 2Fc2)/3
4385 reflections(Δ/σ)max = 0.004
253 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.63840 (16)0.43150 (13)0.54539 (11)0.0220 (3)
N20.29373 (16)0.01430 (13)0.25488 (12)0.0241 (3)
N31.56395 (18)0.85155 (14)1.00029 (13)0.0306 (3)
O10.00836 (14)−0.22274 (12)0.37598 (11)0.0320 (3)
C20.53780 (19)0.29481 (16)0.46742 (15)0.0243 (4)
H20.54040.26140.38820.029*
C30.43160 (19)0.21170 (16)0.51985 (14)0.0228 (3)
C40.47183 (19)0.30524 (16)0.63990 (14)0.0215 (3)
C50.4079 (2)0.28731 (16)0.73508 (15)0.0251 (4)
H50.32210.19670.72940.030*
C60.4719 (2)0.40387 (17)0.83761 (15)0.0287 (4)
H60.43070.39250.90360.034*
C70.5965 (2)0.53862 (17)0.84652 (16)0.0296 (4)
H70.63660.61710.91770.036*
C80.6620 (2)0.55952 (16)0.75394 (15)0.0258 (4)
H80.74650.65080.75980.031*
C90.59912 (19)0.44119 (16)0.65166 (14)0.0221 (3)
C100.29595 (19)0.06574 (15)0.46778 (15)0.0237 (4)
H100.24590.02730.52360.028*
C110.23045 (19)−0.02341 (15)0.35161 (14)0.0225 (3)
C120.1480 (2)0.00383 (16)0.15034 (15)0.0266 (4)
H12A0.18810.02710.08220.032*
H12B0.11240.07440.17970.032*
C13−0.0109 (2)−0.14677 (17)0.09871 (16)0.0301 (4)
H13A−0.1140−0.14110.10690.036*
H13B−0.0382−0.18850.00900.036*
C140.03321 (19)−0.24051 (16)0.17351 (15)0.0259 (4)
H14−0.0676−0.33830.14410.031*
C150.1944 (2)−0.24547 (17)0.15857 (16)0.0303 (4)
H15A0.1687−0.28810.06940.036*
H15B0.2270−0.30430.20660.036*
C160.3455 (2)−0.09142 (16)0.20803 (15)0.0280 (4)
H16A0.4442−0.08480.27650.034*
H16B0.3857−0.06840.13990.034*
C170.0820 (2)−0.16865 (16)0.30955 (15)0.0249 (4)
C180.76263 (19)0.55154 (16)0.52187 (14)0.0235 (3)
H18A0.72270.62430.51930.028*
H18B0.76620.51860.43920.028*
C190.94360 (19)0.61802 (15)0.62085 (14)0.0222 (3)
C201.04167 (19)0.76546 (16)0.67051 (15)0.0264 (4)
H200.99690.82370.63790.032*
C211.2034 (2)0.82836 (17)0.76673 (15)0.0284 (4)
H211.26840.92900.80120.034*
C221.26979 (19)0.74218 (16)0.81242 (14)0.0238 (4)
C231.1756 (2)0.59485 (16)0.76076 (15)0.0257 (4)
H231.22240.53650.79050.031*
C241.0130 (2)0.53398 (16)0.66567 (15)0.0256 (4)
H240.94820.43340.63070.031*
C251.4347 (2)0.80457 (16)0.91607 (15)0.0251 (4)
U11U22U33U12U13U23
N10.0188 (6)0.0228 (7)0.0201 (7)0.0072 (6)0.0063 (5)0.0052 (6)
N20.0228 (7)0.0244 (7)0.0227 (7)0.0105 (6)0.0066 (6)0.0063 (6)
N30.0275 (8)0.0302 (8)0.0286 (8)0.0114 (6)0.0075 (7)0.0067 (6)
O10.0327 (7)0.0271 (6)0.0347 (7)0.0098 (5)0.0162 (6)0.0113 (5)
C20.0227 (8)0.0239 (8)0.0208 (8)0.0099 (7)0.0046 (7)0.0026 (7)
C30.0214 (8)0.0241 (8)0.0208 (8)0.0111 (7)0.0055 (7)0.0052 (7)
C40.0190 (8)0.0230 (8)0.0211 (8)0.0108 (7)0.0043 (6)0.0068 (7)
C50.0222 (8)0.0252 (9)0.0251 (9)0.0091 (7)0.0081 (7)0.0079 (7)
C60.0281 (9)0.0324 (9)0.0242 (9)0.0123 (8)0.0119 (7)0.0069 (7)
C70.0298 (9)0.0288 (9)0.0255 (9)0.0116 (8)0.0106 (8)0.0022 (7)
C80.0231 (8)0.0230 (8)0.0249 (9)0.0081 (7)0.0060 (7)0.0046 (7)
C90.0199 (8)0.0248 (8)0.0199 (8)0.0108 (7)0.0051 (6)0.0059 (7)
C100.0245 (8)0.0229 (8)0.0250 (9)0.0117 (7)0.0092 (7)0.0091 (7)
C110.0214 (8)0.0207 (8)0.0243 (9)0.0094 (7)0.0075 (7)0.0075 (7)
C120.0262 (9)0.0262 (9)0.0245 (9)0.0114 (7)0.0067 (7)0.0082 (7)
C130.0244 (9)0.0304 (9)0.0287 (9)0.0106 (7)0.0041 (7)0.0092 (7)
C140.0210 (8)0.0187 (8)0.0273 (9)0.0043 (7)0.0036 (7)0.0044 (7)
C150.0324 (9)0.0269 (9)0.0300 (10)0.0148 (8)0.0100 (8)0.0060 (7)
C160.0260 (9)0.0296 (9)0.0286 (9)0.0139 (7)0.0101 (7)0.0074 (7)
C170.0229 (8)0.0238 (8)0.0300 (9)0.0129 (7)0.0090 (7)0.0105 (7)
C180.0207 (8)0.0240 (8)0.0230 (8)0.0081 (7)0.0078 (7)0.0082 (7)
C190.0215 (8)0.0232 (8)0.0210 (8)0.0083 (7)0.0104 (7)0.0068 (7)
C200.0243 (8)0.0239 (9)0.0293 (9)0.0108 (7)0.0077 (7)0.0101 (7)
C210.0243 (9)0.0198 (8)0.0318 (10)0.0060 (7)0.0068 (7)0.0040 (7)
C220.0208 (8)0.0272 (9)0.0222 (8)0.0104 (7)0.0084 (7)0.0068 (7)
C230.0247 (9)0.0252 (9)0.0285 (9)0.0128 (7)0.0091 (7)0.0105 (7)
C240.0242 (8)0.0223 (8)0.0256 (9)0.0084 (7)0.0081 (7)0.0049 (7)
C250.0251 (9)0.0241 (9)0.0270 (9)0.0109 (7)0.0115 (8)0.0090 (7)
N1—C21.3659 (19)C12—H12B0.9900
N1—C91.3845 (19)C13—C141.537 (2)
N1—C181.4597 (18)C13—H13A0.9900
N2—C111.4466 (19)C13—H13B0.9900
N2—C121.4804 (19)C14—C171.507 (2)
N2—C161.4825 (19)C14—C151.539 (2)
N3—C251.150 (2)C14—H141.0000
O1—C171.2280 (18)C15—C161.547 (2)
C2—C31.383 (2)C15—H15A0.9900
C2—H20.9500C15—H15B0.9900
C3—C101.443 (2)C16—H16A0.9900
C3—C41.446 (2)C16—H16B0.9900
C4—C51.396 (2)C18—C191.510 (2)
C4—C91.409 (2)C18—H18A0.9900
C5—C61.380 (2)C18—H18B0.9900
C5—H50.9500C19—C241.387 (2)
C6—C71.401 (2)C19—C201.392 (2)
C6—H60.9500C20—C211.384 (2)
C7—C81.379 (2)C20—H200.9500
C7—H70.9500C21—C221.395 (2)
C8—C91.391 (2)C21—H210.9500
C8—H80.9500C22—C231.392 (2)
C10—C111.342 (2)C22—C251.442 (2)
C10—H100.9500C23—C241.384 (2)
C11—C171.482 (2)C23—H230.9500
C12—C131.549 (2)C24—H240.9500
C12—H12A0.9900
C2—N1—C9108.68 (12)H13A—C13—H13B108.3
C2—N1—C18127.10 (13)C17—C14—C13107.70 (13)
C9—N1—C18124.18 (13)C17—C14—C15107.79 (13)
C11—N2—C12108.02 (12)C13—C14—C15108.08 (13)
C11—N2—C16108.35 (11)C17—C14—H14111.0
C12—N2—C16108.05 (12)C13—C14—H14111.0
N1—C2—C3110.60 (14)C15—C14—H14111.0
N1—C2—H2124.7C14—C15—C16108.19 (12)
C3—C2—H2124.7C14—C15—H15A110.1
C2—C3—C10129.90 (14)C16—C15—H15A110.1
C2—C3—C4105.74 (13)C14—C15—H15B110.1
C10—C3—C4124.17 (13)C16—C15—H15B110.1
C5—C4—C9119.08 (14)H15A—C15—H15B108.4
C5—C4—C3133.84 (14)N2—C16—C15112.41 (12)
C9—C4—C3107.03 (13)N2—C16—H16A109.1
C6—C5—C4118.62 (15)C15—C16—H16A109.1
C6—C5—H5120.7N2—C16—H16B109.1
C4—C5—H5120.7C15—C16—H16B109.1
C5—C6—C7121.38 (15)H16A—C16—H16B107.9
C5—C6—H6119.3O1—C17—C11124.83 (15)
C7—C6—H6119.3O1—C17—C14124.67 (14)
C8—C7—C6121.27 (15)C11—C17—C14110.51 (13)
C8—C7—H7119.4N1—C18—C19112.15 (12)
C6—C7—H7119.4N1—C18—H18A109.2
C7—C8—C9117.14 (15)C19—C18—H18A109.2
C7—C8—H8121.4N1—C18—H18B109.2
C9—C8—H8121.4C19—C18—H18B109.2
N1—C9—C8129.54 (14)H18A—C18—H18B107.9
N1—C9—C4107.93 (13)C24—C19—C20119.08 (14)
C8—C9—C4122.50 (15)C24—C19—C18120.83 (14)
C11—C10—C3129.13 (15)C20—C19—C18120.07 (13)
C11—C10—H10115.4C21—C20—C19120.97 (14)
C3—C10—H10115.4C21—C20—H20119.5
C10—C11—N2123.45 (14)C19—C20—H20119.5
C10—C11—C17122.77 (14)C20—C21—C22119.17 (15)
N2—C11—C17113.76 (13)C20—C21—H21120.4
N2—C12—C13111.92 (12)C22—C21—H21120.4
N2—C12—H12A109.2C23—C22—C21120.39 (14)
C13—C12—H12A109.2C23—C22—C25119.24 (14)
N2—C12—H12B109.2C21—C22—C25120.35 (14)
C13—C12—H12B109.2C24—C23—C22119.51 (14)
H12A—C12—H12B107.9C24—C23—H23120.2
C14—C13—C12108.64 (13)C22—C23—H23120.2
C14—C13—H13A110.0C23—C24—C19120.82 (14)
C12—C13—H13A110.0C23—C24—H24119.6
C14—C13—H13B110.0C19—C24—H24119.6
C12—C13—H13B110.0N3—C25—C22178.06 (17)
C9—N1—C2—C3−0.32 (16)C16—N2—C12—C1359.45 (16)
C18—N1—C2—C3−177.95 (13)N2—C12—C13—C14−0.11 (18)
N1—C2—C3—C10174.58 (14)C12—C13—C14—C1756.92 (16)
N1—C2—C3—C4−0.44 (16)C12—C13—C14—C15−59.29 (17)
C2—C3—C4—C5178.37 (16)C17—C14—C15—C16−57.07 (16)
C10—C3—C4—C53.0 (3)C13—C14—C15—C1659.08 (16)
C2—C3—C4—C91.02 (16)C11—N2—C16—C1557.11 (16)
C10—C3—C4—C9−174.37 (14)C12—N2—C16—C15−59.69 (16)
C9—C4—C5—C60.0 (2)C14—C15—C16—N20.19 (18)
C3—C4—C5—C6−177.08 (15)C10—C11—C17—O1−2.1 (2)
C4—C5—C6—C71.0 (2)N2—C11—C17—O1179.80 (13)
C5—C6—C7—C8−1.0 (2)C10—C11—C17—C14177.55 (14)
C6—C7—C8—C90.0 (2)N2—C11—C17—C14−0.58 (17)
C2—N1—C9—C8−176.79 (15)C13—C14—C17—O1121.88 (16)
C18—N1—C9—C80.9 (2)C15—C14—C17—O1−121.72 (16)
C2—N1—C9—C40.97 (16)C13—C14—C17—C11−57.74 (16)
C18—N1—C9—C4178.69 (12)C15—C14—C17—C1158.66 (16)
C7—C8—C9—N1178.54 (15)C2—N1—C18—C19−122.47 (16)
C7—C8—C9—C41.1 (2)C9—N1—C18—C1960.24 (18)
C5—C4—C9—N1−179.04 (12)N1—C18—C19—C2442.68 (19)
C3—C4—C9—N1−1.23 (16)N1—C18—C19—C20−135.82 (14)
C5—C4—C9—C8−1.1 (2)C24—C19—C20—C21−2.6 (2)
C3—C4—C9—C8176.73 (14)C18—C19—C20—C21175.96 (14)
C2—C3—C10—C11−5.1 (3)C19—C20—C21—C221.3 (2)
C4—C3—C10—C11169.08 (15)C20—C21—C22—C230.9 (2)
C3—C10—C11—N22.1 (2)C20—C21—C22—C25−177.41 (14)
C3—C10—C11—C17−175.87 (14)C21—C22—C23—C24−1.7 (2)
C12—N2—C11—C10−119.06 (15)C25—C22—C23—C24176.58 (14)
C16—N2—C11—C10124.13 (15)C22—C23—C24—C190.4 (2)
C12—N2—C11—C1759.06 (15)C20—C19—C24—C231.7 (2)
C16—N2—C11—C17−57.76 (16)C18—C19—C24—C23−176.82 (14)
C11—N2—C12—C13−57.57 (16)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Novel substituted (Z)-2-(N-benzylindol-3-ylmethylene)quinuclidin-3-one and (Z)-(+/-)-2-(N-benzylindol-3-ylmethylene)quinuclidin-3-ol derivatives as potent thermal sensitizing agents.

Authors:  Vijayakumar N Sonar; Y Thirupathi Reddy; Konjeti R Sekhar; Soumya Sasi; Michael L Freeman; Peter A Crooks
Journal:  Bioorg Med Chem Lett       Date:  2007-10-17       Impact factor: 2.823

3.  NADPH oxidase activity is essential for Keap1/Nrf2-mediated induction of GCLC in response to 2-indol-3-yl-methylenequinuclidin-3-ols.

Authors:  Konjeti R Sekhar; Peter A Crooks; Vijayakumar N Sonar; David B Friedman; Jeff Y Chan; Michael J Meredith; Joseph H Starnes; Kathy R Kelton; Samantha R Summar; Soumya Sasi; Michael L Freeman
Journal:  Cancer Res       Date:  2003-09-01       Impact factor: 12.701

  3 in total

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