Literature DB >> 21580912

(2,9-Dimethyl-1,10-phenanthroline-κN,N')(4-hydroxy-benzoato-κO,O')(nitrato-κO)copper(II).

Cui-Ping Zhai, Feng-Mei Yan, Pei-Zheng Zhao.   

Abstract

In the title compound, [Cu(C(7)H(5)O(3))(NO(3))(C(14)H(12)N(2))], the Cu(II) ion is five-coordinated in a slightly distorted square-pyramidal geometry by one O atom of a nitrate anion, two O atoms of a 4-hydroxy-benzoate anion, and two N atoms from a bidentate 2,9-dimethyl-1,10-phenanthroline (dmphen) ligand. In the crystal structure, inversion-related mol-ecules are linked into dimers by O-H⋯O hydrogen bonds. The packing is further stabilized by π-π inter-actions involving the benzene rings of the dmphen and hydroxy-benzoate units, with centroid-centroid distances of 3.4930 (14) or 3.5727 (14) Å.

Entities:  

Year:  2008        PMID: 21580912      PMCID: PMC2959601          DOI: 10.1107/S1600536808034788

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Xuan et al. (2007 ▶); Zhao et al. (2007 ▶); Okabe et al. (2007 ▶). For general background, see: Selvakumar et al. (2006 ▶).

Experimental

Crystal data

[Cu(C7H5O3)(NO3)(C14H12N2)] M = 470.92 Triclinic, a = 9.594 (1) Å b = 9.802 (1) Å c = 12.347 (1) Å α = 78.687 (14)° β = 70.409 (13)° γ = 63.740 (12)° V = 979.4 (2) Å3 Z = 2 Mo Kα radiation μ = 1.16 mm−1 T = 291 (2) K 0.37 × 0.30 × 0.17 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1997 ▶) T min = 0.673, T max = 0.830 7393 measured reflections 3613 independent reflections 3129 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.082 S = 1.02 3613 reflections 283 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.28 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808034788/ci2692sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808034788/ci2692Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C7H5O3)(NO3)(C14H12N2)]Z = 2
Mr = 470.92F(000) = 482
Triclinic, P1Dx = 1.597 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.594 (1) ÅCell parameters from 3492 reflections
b = 9.802 (1) Åθ = 2.5–26.8°
c = 12.347 (1) ŵ = 1.16 mm1
α = 78.687 (14)°T = 291 K
β = 70.409 (13)°Block, green
γ = 63.740 (12)°0.37 × 0.30 × 0.17 mm
V = 979.4 (2) Å3
Bruker SMART CCD area-detector diffractometer3613 independent reflections
Radiation source: fine-focus sealed tube3129 reflections with I > 2σ(I)
graphiteRint = 0.016
φ and ω scansθmax = 25.5°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 1997)h = −11→11
Tmin = 0.673, Tmax = 0.830k = −11→11
7393 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.082H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0426P)2 + 0.3425P] where P = (Fo2 + 2Fc2)/3
3613 reflections(Δ/σ)max = 0.001
283 parametersΔρmax = 0.29 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)are estimated using the full covariance matrix. The cell e.s.d.'s are takeninto account individually in the estimation of e.s.d.'s in distances, anglesand torsion angles; correlations between e.s.d.'s in cell parameters are onlyused when they are defined by crystal symmetry. An approximate (isotropic)treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR andgoodness of fit S are based on F2, conventional R-factors R are basedon F, with F set to zero for negative F2. The threshold expression ofF2 > σ(F2) is used only for calculating R-factors(gt) etc. and isnot relevant to the choice of reflections for refinement. R-factors basedon F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.56944 (3)0.10556 (3)0.31286 (2)0.04415 (11)
O10.3621 (2)0.0772 (2)0.38002 (17)0.0671 (5)
O20.4119 (2)0.2318 (2)0.44919 (15)0.0621 (5)
O3−0.33023 (19)0.4060 (2)0.72945 (16)0.0582 (4)
H3−0.35410.48630.75610.087*
O40.4677 (2)0.3057 (2)0.18943 (16)0.0622 (5)
O50.4474 (2)0.1655 (2)0.08484 (18)0.0701 (5)
O60.3103 (3)0.4068 (3)0.0818 (2)0.1043 (9)
N10.7212 (2)−0.0741 (2)0.21653 (16)0.0421 (4)
N20.7676 (2)0.1464 (2)0.28006 (16)0.0422 (4)
N30.4092 (2)0.2916 (2)0.11642 (18)0.0504 (5)
C10.5285 (3)−0.1813 (3)0.2297 (3)0.0715 (8)
H1A0.5038−0.20400.31140.107*
H1B0.5249−0.25690.19290.107*
H1C0.4503−0.08270.21330.107*
C20.6932 (3)−0.1819 (3)0.1857 (2)0.0510 (6)
C30.8195 (4)−0.2957 (3)0.1132 (2)0.0641 (7)
H3A0.7983−0.36900.09200.077*
C40.9713 (3)−0.3004 (3)0.0738 (2)0.0625 (7)
H41.0537−0.37740.02700.075*
C51.0041 (3)−0.1884 (3)0.10370 (19)0.0496 (6)
C61.1587 (3)−0.1807 (3)0.0638 (2)0.0602 (7)
H61.2452−0.25420.01600.072*
C71.1814 (3)−0.0682 (3)0.0943 (2)0.0598 (7)
H71.2828−0.06480.06660.072*
C81.0515 (3)0.0449 (3)0.1683 (2)0.0498 (6)
C91.0668 (3)0.1644 (4)0.2035 (2)0.0643 (7)
H91.16590.17240.17870.077*
C100.9371 (3)0.2677 (4)0.2736 (3)0.0665 (7)
H100.94850.34630.29640.080*
C110.7859 (3)0.2593 (3)0.3126 (2)0.0522 (6)
C120.6441 (3)0.3759 (3)0.3901 (3)0.0737 (8)
H12A0.56060.43080.35230.111*
H12B0.67810.44560.40750.111*
H12C0.60300.32580.46020.111*
C130.8981 (2)0.0411 (3)0.20915 (18)0.0406 (5)
C140.8733 (3)−0.0774 (2)0.17599 (18)0.0410 (5)
C150.3136 (3)0.1778 (3)0.4508 (2)0.0473 (5)
C160.1466 (3)0.2347 (3)0.52814 (18)0.0417 (5)
C170.0886 (3)0.3593 (3)0.59319 (19)0.0470 (5)
H170.15760.40370.59090.056*
C18−0.0697 (3)0.4184 (3)0.6611 (2)0.0468 (5)
H18−0.10690.50200.70410.056*
C19−0.1735 (3)0.3527 (3)0.66513 (19)0.0431 (5)
C20−0.1163 (3)0.2265 (3)0.6021 (2)0.0496 (6)
H20−0.18450.18060.60600.060*
C210.0425 (3)0.1690 (3)0.5334 (2)0.0481 (5)
H210.07980.08550.49030.058*
U11U22U33U12U13U23
Cu10.03013 (15)0.04953 (18)0.05171 (18)−0.01577 (12)−0.00692 (11)−0.00997 (12)
O10.0446 (9)0.0701 (12)0.0827 (13)−0.0273 (9)0.0080 (9)−0.0326 (10)
O20.0428 (9)0.0921 (14)0.0585 (10)−0.0370 (9)0.0016 (8)−0.0242 (9)
O30.0380 (9)0.0583 (11)0.0737 (12)−0.0203 (8)−0.0022 (8)−0.0164 (9)
O40.0612 (11)0.0592 (11)0.0719 (12)−0.0204 (9)−0.0303 (10)−0.0054 (9)
O50.0574 (11)0.0630 (12)0.0845 (14)−0.0193 (9)−0.0084 (10)−0.0260 (10)
O60.1100 (19)0.0705 (14)0.129 (2)0.0055 (13)−0.0824 (17)−0.0155 (14)
N10.0362 (9)0.0428 (10)0.0467 (10)−0.0140 (8)−0.0142 (8)−0.0023 (8)
N20.0334 (9)0.0479 (10)0.0472 (10)−0.0164 (8)−0.0136 (8)−0.0037 (8)
N30.0319 (10)0.0550 (13)0.0567 (12)−0.0123 (9)−0.0060 (9)−0.0118 (10)
C10.0650 (17)0.0609 (17)0.105 (2)−0.0342 (14)−0.0248 (16)−0.0169 (16)
C20.0521 (14)0.0424 (13)0.0617 (15)−0.0162 (11)−0.0243 (12)−0.0028 (11)
C30.0733 (19)0.0473 (14)0.0741 (18)−0.0150 (13)−0.0308 (15)−0.0147 (13)
C40.0585 (16)0.0519 (15)0.0574 (16)0.0012 (12)−0.0186 (13)−0.0148 (12)
C50.0440 (13)0.0516 (14)0.0397 (12)−0.0069 (10)−0.0137 (10)−0.0015 (10)
C60.0371 (13)0.0738 (18)0.0433 (14)−0.0045 (12)−0.0047 (10)−0.0027 (12)
C70.0319 (12)0.0829 (19)0.0499 (14)−0.0182 (12)−0.0061 (10)0.0056 (13)
C80.0356 (12)0.0675 (16)0.0433 (13)−0.0215 (11)−0.0122 (10)0.0063 (11)
C90.0444 (14)0.091 (2)0.0704 (18)−0.0419 (14)−0.0157 (13)0.0026 (15)
C100.0567 (16)0.0772 (19)0.084 (2)−0.0401 (15)−0.0211 (15)−0.0098 (16)
C110.0445 (13)0.0579 (15)0.0634 (15)−0.0236 (11)−0.0204 (11)−0.0074 (12)
C120.0550 (16)0.0690 (18)0.106 (2)−0.0223 (14)−0.0214 (16)−0.0340 (17)
C130.0326 (11)0.0506 (13)0.0363 (11)−0.0159 (9)−0.0120 (9)0.0038 (9)
C140.0344 (11)0.0448 (12)0.0385 (11)−0.0107 (9)−0.0139 (9)0.0021 (9)
C150.0407 (12)0.0554 (14)0.0438 (13)−0.0203 (11)−0.0092 (10)−0.0012 (11)
C160.0388 (11)0.0499 (13)0.0374 (11)−0.0214 (10)−0.0092 (9)0.0005 (10)
C170.0432 (12)0.0598 (14)0.0459 (13)−0.0306 (11)−0.0088 (10)−0.0033 (11)
C180.0475 (13)0.0489 (13)0.0458 (13)−0.0230 (11)−0.0068 (10)−0.0093 (10)
C190.0355 (11)0.0477 (12)0.0433 (12)−0.0172 (10)−0.0091 (9)0.0003 (10)
C200.0418 (12)0.0523 (14)0.0610 (15)−0.0259 (11)−0.0104 (11)−0.0073 (11)
C210.0455 (13)0.0465 (13)0.0517 (14)−0.0198 (10)−0.0073 (10)−0.0105 (10)
Cu1—O12.004 (3)C5—C61.429 (4)
Cu1—N12.007 (3)C6—C71.356 (4)
Cu1—N22.008 (3)C6—H60.93
Cu1—O22.026 (2)C7—C81.425 (4)
Cu1—O42.292 (3)C7—H70.93
Cu1—C152.357 (3)C8—C131.402 (4)
O1—C151.269 (3)C8—C91.406 (4)
O2—C151.264 (3)C9—C101.352 (4)
O3—C191.353 (3)C9—H90.93
O3—H30.82C10—C111.402 (4)
O4—N31.266 (3)C10—H100.93
O5—N31.228 (3)C11—C121.501 (4)
O6—N31.221 (3)C12—H12A0.96
N1—C21.346 (3)C12—H12B0.96
N1—C141.363 (3)C12—H12C0.96
N2—C111.345 (3)C13—C141.438 (3)
N2—C131.370 (3)C15—C161.478 (3)
C1—C21.486 (4)C16—C211.387 (3)
C1—H1A0.96C16—C171.390 (3)
C1—H1B0.96C17—C181.380 (3)
C1—H1C0.96C17—H170.93
C2—C31.408 (4)C18—C191.390 (3)
C3—C41.354 (4)C18—H180.93
C3—H3A0.93C19—C201.388 (4)
C4—C51.409 (4)C20—C211.386 (3)
C4—H40.93C20—H200.93
C5—C141.406 (3)C21—H210.93
O1—Cu1—N1105.07 (10)C6—C7—H7119.7
O1—Cu1—N2167.57 (8)C8—C7—H7119.7
N1—Cu1—N284.14 (10)C13—C8—C9116.6 (2)
O1—Cu1—O264.92 (9)C13—C8—C7119.8 (2)
N1—Cu1—O2161.37 (8)C9—C8—C7123.6 (2)
N2—Cu1—O2103.84 (9)C10—C9—C8119.9 (2)
O1—Cu1—O494.09 (10)C10—C9—H9120.1
N1—Cu1—O4106.75 (12)C8—C9—H9120.1
N2—Cu1—O491.11 (10)C9—C10—C11121.6 (3)
O2—Cu1—O490.11 (12)C9—C10—H10119.2
O1—Cu1—C1532.57 (9)C11—C10—H10119.2
N1—Cu1—C15136.29 (9)N2—C11—C10119.8 (2)
N2—Cu1—C15136.17 (10)N2—C11—C12119.8 (2)
O2—Cu1—C1532.40 (8)C10—C11—C12120.3 (2)
O4—Cu1—C1591.14 (10)C11—C12—H12A109.5
C15—O1—Cu189.23 (15)C11—C12—H12B109.5
C15—O2—Cu188.38 (16)H12A—C12—H12B109.5
C19—O3—H3109.5C11—C12—H12C109.5
N3—O4—Cu1121.09 (17)H12A—C12—H12C109.5
C2—N1—C14118.7 (2)H12B—C12—H12C109.5
C2—N1—Cu1130.40 (18)N2—C13—C8123.0 (2)
C14—N1—Cu1110.83 (15)N2—C13—C14117.3 (2)
C11—N2—C13119.1 (2)C8—C13—C14119.7 (2)
C11—N2—Cu1130.43 (16)N1—C14—C5123.5 (2)
C13—N2—Cu1110.44 (16)N1—C14—C13117.20 (19)
O6—N3—O5121.6 (2)C5—C14—C13119.3 (2)
O6—N3—O4117.7 (2)O2—C15—O1117.3 (2)
O5—N3—O4120.7 (2)O2—C15—C16121.2 (2)
C2—C1—H1A109.5O1—C15—C16121.4 (2)
C2—C1—H1B109.5O2—C15—Cu159.23 (14)
H1A—C1—H1B109.5O1—C15—Cu158.19 (13)
C2—C1—H1C109.5C16—C15—Cu1174.09 (17)
H1A—C1—H1C109.5C21—C16—C17118.8 (2)
H1B—C1—H1C109.5C21—C16—C15120.6 (2)
N1—C2—C3120.2 (2)C17—C16—C15120.5 (2)
N1—C2—C1119.6 (2)C18—C17—C16121.1 (2)
C3—C2—C1120.1 (2)C18—C17—H17119.5
C4—C3—C2121.3 (3)C16—C17—H17119.5
C4—C3—H3A119.4C17—C18—C19119.8 (2)
C2—C3—H3A119.4C17—C18—H18120.1
C3—C4—C5119.8 (2)C19—C18—H18120.1
C3—C4—H4120.1O3—C19—C20117.7 (2)
C5—C4—H4120.1O3—C19—C18122.6 (2)
C14—C5—C4116.5 (2)C20—C19—C18119.7 (2)
C14—C5—C6119.4 (2)C21—C20—C19120.0 (2)
C4—C5—C6124.1 (2)C21—C20—H20120.0
C7—C6—C5121.1 (2)C19—C20—H20120.0
C7—C6—H6119.4C20—C21—C16120.7 (2)
C5—C6—H6119.4C20—C21—H21119.7
C6—C7—C8120.6 (2)C16—C21—H21119.7
N1—Cu1—O1—C15165.73 (15)C13—N2—C11—C100.2 (4)
N2—Cu1—O1—C1528.8 (4)Cu1—N2—C11—C10−176.80 (19)
O2—Cu1—O1—C152.50 (14)C13—N2—C11—C12179.9 (2)
O4—Cu1—O1—C15−85.71 (18)Cu1—N2—C11—C123.0 (4)
O1—Cu1—O2—C15−2.51 (14)C9—C10—C11—N2−0.1 (4)
N1—Cu1—O2—C15−63.2 (3)C9—C10—C11—C12−179.9 (3)
N2—Cu1—O2—C15−176.87 (14)C11—N2—C13—C80.0 (3)
O4—Cu1—O2—C1591.96 (17)Cu1—N2—C13—C8177.49 (17)
O1—Cu1—O4—N3−57.54 (18)C11—N2—C13—C14−179.8 (2)
N1—Cu1—O4—N349.54 (19)Cu1—N2—C13—C14−2.2 (2)
N2—Cu1—O4—N3133.76 (17)C9—C8—C13—N2−0.1 (3)
O2—Cu1—O4—N3−122.40 (18)C7—C8—C13—N2−179.7 (2)
C15—Cu1—O4—N3−90.02 (19)C9—C8—C13—C14179.6 (2)
O1—Cu1—N1—C29.1 (2)C7—C8—C13—C140.0 (3)
N2—Cu1—N1—C2−179.4 (2)C2—N1—C14—C5−0.4 (3)
O2—Cu1—N1—C264.0 (3)Cu1—N1—C14—C5−178.41 (17)
O4—Cu1—N1—C2−90.0 (2)C2—N1—C14—C13178.98 (19)
C15—Cu1—N1—C220.2 (3)Cu1—N1—C14—C131.0 (2)
O1—Cu1—N1—C14−173.18 (14)C4—C5—C14—N1−0.2 (3)
N2—Cu1—N1—C14−1.68 (14)C6—C5—C14—N1178.8 (2)
O2—Cu1—N1—C14−118.3 (2)C4—C5—C14—C13−179.5 (2)
O4—Cu1—N1—C1487.72 (16)C6—C5—C14—C13−0.5 (3)
C15—Cu1—N1—C14−162.11 (14)N2—C13—C14—N10.9 (3)
O1—Cu1—N2—C11−42.2 (5)C8—C13—C14—N1−178.84 (19)
N1—Cu1—N2—C11179.3 (2)N2—C13—C14—C5−179.72 (19)
O2—Cu1—N2—C11−17.8 (2)C8—C13—C14—C50.6 (3)
O4—Cu1—N2—C1172.6 (2)Cu1—O2—C15—O14.0 (2)
C15—Cu1—N2—C11−20.2 (3)Cu1—O2—C15—C16−173.1 (2)
O1—Cu1—N2—C13140.6 (3)Cu1—O1—C15—O2−4.1 (2)
N1—Cu1—N2—C132.12 (14)Cu1—O1—C15—C16173.1 (2)
O2—Cu1—N2—C13165.01 (14)O1—Cu1—C15—O2175.8 (2)
O4—Cu1—N2—C13−104.60 (17)N1—Cu1—C15—O2155.62 (14)
C15—Cu1—N2—C13162.59 (14)N2—Cu1—C15—O24.4 (2)
Cu1—O4—N3—O6155.5 (2)O4—Cu1—C15—O2−88.41 (18)
Cu1—O4—N3—O5−22.2 (3)N1—Cu1—C15—O1−20.2 (2)
C14—N1—C2—C30.2 (3)N2—Cu1—C15—O1−171.39 (14)
Cu1—N1—C2—C3177.79 (18)O2—Cu1—C15—O1−175.8 (2)
C14—N1—C2—C1179.5 (2)O4—Cu1—C15—O195.81 (18)
Cu1—N1—C2—C1−3.0 (3)O2—C15—C16—C21−176.7 (2)
N1—C2—C3—C40.5 (4)O1—C15—C16—C216.3 (4)
C1—C2—C3—C4−178.7 (3)O2—C15—C16—C176.2 (3)
C2—C3—C4—C5−1.1 (4)O1—C15—C16—C17−170.8 (2)
C3—C4—C5—C140.9 (4)C21—C16—C17—C18−0.6 (3)
C3—C4—C5—C6−178.0 (2)C15—C16—C17—C18176.6 (2)
C14—C5—C6—C7−0.1 (4)C16—C17—C18—C190.1 (4)
C4—C5—C6—C7178.8 (2)C17—C18—C19—O3−179.5 (2)
C5—C6—C7—C80.7 (4)C17—C18—C19—C201.0 (3)
C6—C7—C8—C13−0.6 (4)O3—C19—C20—C21178.9 (2)
C6—C7—C8—C9179.8 (2)C18—C19—C20—C21−1.6 (4)
C13—C8—C9—C100.1 (4)C19—C20—C21—C161.1 (4)
C7—C8—C9—C10179.7 (3)C17—C16—C21—C200.0 (4)
C8—C9—C10—C110.0 (4)C15—C16—C21—C20−177.2 (2)
D—H···AD—HH···AD···AD—H···A
O3—H3···O4i0.821.972.767 (4)164
Table 1

Selected bond lengths (Å)

Cu1—O12.004 (3)
Cu1—N12.007 (3)
Cu1—N22.008 (3)
Cu1—O22.026 (2)
Cu1—O42.292 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O4i0.821.972.767 (4)164

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Journal:  J Inorg Biochem       Date:  2006-01-09       Impact factor: 4.155

  2 in total
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1.  Synthesis, Structural, and Cytotoxic Properties of New Water-Soluble Copper(II) Complexes based on 2,9-Dimethyl-1,10-Phenanthroline and Their One Derivative Containing 1,3,5-Triaza-7-Phosphaadamantane-7-Oxide.

Authors:  Ewelina I Śliwa; Urszula Śliwińska-Hill; Barbara Bażanów; Miłosz Siczek; Julia Kłak; Piotr Smoleński
Journal:  Molecules       Date:  2020-02-08       Impact factor: 4.411

  1 in total

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