| Literature DB >> 21580903 |
Abstract
The title complex, [Cd(C(14)H(11)N(2)O(4))(2)(C(5)H(5)N)(2)], exhibits crystallographic twofold symmetry. The Cd(II) atom is located on the twofold rotation axis and reveals a slightly distorted octa-hedral coordination defined by four atoms (N(2)O(2)) from two symmetry-related chelate ligands and two pyridine N atoms. Intra-molecular O-H⋯O and N-H⋯O hydrogen bonds stabilize the mol-ecular conformation while inter-molecular O-H⋯O hydrogen bonding links mol-ecules into a triad, generating a helix along the threefold screw axis.Entities:
Year: 2008 PMID: 21580903 PMCID: PMC2959594 DOI: 10.1107/S1600536808034533
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cd(C14H11N2O4)2(C5H5N)2] | |
| Mo | |
| Trigonal, | Cell parameters from 5141 reflections |
| θ = 2.9–22.9° | |
| µ = 0.68 mm−1 | |
| Block, colourless | |
| 0.40 × 0.38 × 0.35 mm |
| Bruker SMART 1000 CCD area-detector diffractometer | 3146 independent reflections |
| Radiation source: fine-focus sealed tube | 2750 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.0°, θmin = 1.8° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | |
| 13955 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 3146 reflections | Δρmax = 0.90 e Å−3 |
| 241 parameters | Δρmin = −0.32 e Å−3 |
| 0 restraints | Absolute structure: Flack (1983), 1353 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: −0.06 (3) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cd1 | 1.0000 | 0.45722 (2) | 0.6667 | 0.04088 (11) | |
| N1 | 0.8620 (2) | 0.2612 (2) | 0.69499 (15) | 0.0387 (7) | |
| N2 | 0.8356 (3) | 0.2467 (3) | 0.77051 (14) | 0.0406 (6) | |
| H2 | 0.8005 | 0.1771 | 0.7897 | 0.049* | |
| N3 | 0.8726 (2) | 0.5186 (3) | 0.61934 (16) | 0.0449 (7) | |
| O1 | 0.9119 (2) | 0.4418 (2) | 0.78506 (13) | 0.0517 (7) | |
| O2 | 0.7567 (3) | 0.1137 (2) | 0.88928 (14) | 0.0584 (7) | |
| H2A | 0.7290 | 0.0561 | 0.9170 | 0.088* | |
| O3 | 0.8013 (3) | 0.06392 (19) | 0.69676 (12) | 0.0558 (6) | |
| O4 | 0.9060 (3) | 0.0079 (3) | 0.59233 (16) | 0.0797 (10) | |
| H4 | 0.8760 | 0.0022 | 0.6331 | 0.120* | |
| C1 | 0.8648 (3) | 0.3405 (3) | 0.81227 (18) | 0.0391 (8) | |
| C2 | 0.8409 (3) | 0.3228 (3) | 0.89327 (19) | 0.0403 (8) | |
| C3 | 0.7918 (3) | 0.2136 (4) | 0.9296 (2) | 0.0454 (9) | |
| C4 | 0.7786 (4) | 0.2086 (4) | 1.0058 (2) | 0.0548 (10) | |
| H4A | 0.7467 | 0.1360 | 1.0298 | 0.066* | |
| C5 | 0.8122 (4) | 0.3102 (4) | 1.0464 (2) | 0.0614 (11) | |
| H5 | 0.8012 | 0.3053 | 1.0974 | 0.074* | |
| C6 | 0.8618 (4) | 0.4184 (4) | 1.0120 (2) | 0.0556 (10) | |
| H6 | 0.8858 | 0.4872 | 1.0393 | 0.067* | |
| C7 | 0.8753 (3) | 0.4233 (3) | 0.9357 (2) | 0.0477 (9) | |
| H7 | 0.9085 | 0.4965 | 0.9123 | 0.057* | |
| C8 | 0.8396 (3) | 0.1621 (3) | 0.66318 (18) | 0.0402 (8) | |
| C9 | 0.8647 (3) | 0.1680 (3) | 0.58281 (18) | 0.0415 (8) | |
| C10 | 0.9002 (4) | 0.0938 (4) | 0.5519 (2) | 0.0547 (10) | |
| C11 | 0.9321 (4) | 0.1039 (4) | 0.4769 (2) | 0.0687 (13) | |
| H11 | 0.9592 | 0.0562 | 0.4568 | 0.082* | |
| C12 | 0.9225 (4) | 0.1852 (4) | 0.4338 (2) | 0.0673 (12) | |
| H12 | 0.9435 | 0.1926 | 0.3841 | 0.081* | |
| C13 | 0.8832 (4) | 0.2547 (4) | 0.4624 (2) | 0.0629 (12) | |
| H13 | 0.8754 | 0.3080 | 0.4320 | 0.075* | |
| C14 | 0.8542 (3) | 0.2472 (4) | 0.5364 (2) | 0.0516 (9) | |
| H14 | 0.8274 | 0.2958 | 0.5555 | 0.062* | |
| C15 | 0.9145 (4) | 0.6185 (4) | 0.5806 (2) | 0.0550 (10) | |
| H15 | 0.9942 | 0.6587 | 0.5675 | 0.066* | |
| C16 | 0.8437 (4) | 0.6645 (4) | 0.5591 (2) | 0.0636 (12) | |
| H16 | 0.8760 | 0.7358 | 0.5334 | 0.076* | |
| C17 | 0.7270 (4) | 0.6045 (4) | 0.5759 (2) | 0.0627 (12) | |
| H17 | 0.6777 | 0.6335 | 0.5616 | 0.075* | |
| C18 | 0.6827 (3) | 0.5002 (4) | 0.6144 (2) | 0.0591 (11) | |
| H18 | 0.6026 | 0.4570 | 0.6263 | 0.071* | |
| C19 | 0.7572 (3) | 0.4610 (3) | 0.6349 (2) | 0.0535 (9) | |
| H19 | 0.7262 | 0.3903 | 0.6612 | 0.064* |
| Cd1 | 0.0445 (2) | 0.03796 (14) | 0.04239 (18) | 0.02224 (11) | 0.00869 (17) | 0.00434 (9) |
| N1 | 0.0392 (17) | 0.0368 (16) | 0.0340 (15) | 0.0144 (14) | 0.0019 (12) | 0.0033 (12) |
| N2 | 0.0437 (16) | 0.0396 (16) | 0.0347 (15) | 0.0179 (13) | 0.0072 (13) | 0.0058 (14) |
| N3 | 0.0448 (18) | 0.0430 (17) | 0.0494 (17) | 0.0236 (15) | 0.0064 (13) | 0.0045 (14) |
| O1 | 0.0692 (18) | 0.0398 (14) | 0.0459 (15) | 0.0271 (13) | 0.0147 (13) | 0.0067 (12) |
| O2 | 0.080 (2) | 0.0438 (15) | 0.0434 (15) | 0.0254 (14) | 0.0077 (13) | 0.0107 (13) |
| O3 | 0.0734 (19) | 0.0376 (13) | 0.0493 (14) | 0.0223 (15) | 0.0222 (15) | 0.0080 (11) |
| O4 | 0.118 (3) | 0.081 (2) | 0.066 (2) | 0.070 (2) | 0.0278 (19) | 0.0082 (17) |
| C1 | 0.0388 (19) | 0.041 (2) | 0.041 (2) | 0.0226 (17) | 0.0035 (16) | 0.0036 (17) |
| C2 | 0.042 (2) | 0.049 (2) | 0.0364 (18) | 0.0282 (17) | 0.0029 (15) | 0.0027 (16) |
| C3 | 0.044 (2) | 0.056 (2) | 0.042 (2) | 0.0290 (18) | 0.0009 (16) | 0.0031 (18) |
| C4 | 0.065 (3) | 0.066 (3) | 0.042 (2) | 0.040 (2) | 0.0030 (19) | 0.012 (2) |
| C5 | 0.074 (3) | 0.092 (4) | 0.037 (2) | 0.055 (3) | 0.005 (2) | 0.006 (2) |
| C6 | 0.064 (3) | 0.073 (3) | 0.048 (2) | 0.048 (2) | −0.0070 (19) | −0.011 (2) |
| C7 | 0.055 (2) | 0.049 (2) | 0.049 (2) | 0.0344 (19) | 0.0047 (17) | 0.0020 (17) |
| C8 | 0.0341 (18) | 0.0382 (17) | 0.0420 (17) | 0.0133 (15) | 0.0033 (15) | 0.0030 (14) |
| C9 | 0.038 (2) | 0.0391 (17) | 0.0363 (16) | 0.0113 (17) | 0.0027 (16) | −0.0017 (13) |
| C10 | 0.063 (3) | 0.049 (2) | 0.047 (2) | 0.025 (2) | 0.005 (2) | −0.0025 (18) |
| C11 | 0.077 (3) | 0.076 (3) | 0.046 (2) | 0.033 (3) | 0.011 (2) | −0.011 (2) |
| C12 | 0.065 (3) | 0.073 (3) | 0.039 (2) | 0.016 (2) | 0.004 (2) | −0.006 (2) |
| C13 | 0.065 (3) | 0.061 (2) | 0.040 (2) | 0.014 (2) | −0.010 (2) | 0.0026 (18) |
| C14 | 0.047 (2) | 0.044 (2) | 0.050 (2) | 0.0129 (17) | −0.0035 (18) | −0.0011 (19) |
| C15 | 0.050 (2) | 0.056 (2) | 0.060 (3) | 0.027 (2) | 0.0090 (18) | 0.012 (2) |
| C16 | 0.069 (3) | 0.067 (3) | 0.062 (2) | 0.040 (2) | 0.007 (2) | 0.025 (2) |
| C17 | 0.065 (3) | 0.088 (3) | 0.053 (2) | 0.051 (3) | −0.006 (2) | 0.002 (2) |
| C18 | 0.041 (2) | 0.074 (3) | 0.062 (3) | 0.028 (2) | −0.0012 (19) | −0.007 (2) |
| C19 | 0.048 (2) | 0.044 (2) | 0.063 (2) | 0.0198 (19) | 0.0099 (19) | 0.0037 (19) |
| Cd1—N1 | 2.331 (3) | C5—H5 | 0.9300 |
| Cd1—N1i | 2.331 (3) | C6—C7 | 1.387 (5) |
| Cd1—N3i | 2.337 (3) | C6—H6 | 0.9300 |
| Cd1—N3 | 2.337 (3) | C7—H7 | 0.9300 |
| Cd1—O1 | 2.389 (2) | C8—C9 | 1.482 (4) |
| Cd1—O1i | 2.389 (2) | C9—C10 | 1.382 (5) |
| N1—C8 | 1.307 (4) | C9—C14 | 1.389 (5) |
| N1—N2 | 1.397 (4) | C10—C11 | 1.404 (5) |
| N2—C1 | 1.320 (4) | C11—C12 | 1.371 (6) |
| N2—H2 | 0.8600 | C11—H11 | 0.9300 |
| N3—C15 | 1.332 (5) | C12—C13 | 1.346 (6) |
| N3—C19 | 1.333 (5) | C12—H12 | 0.9300 |
| O1—C1 | 1.245 (4) | C13—C14 | 1.380 (5) |
| O2—C3 | 1.357 (4) | C13—H13 | 0.9300 |
| O2—H2A | 0.8200 | C14—H14 | 0.9300 |
| O3—C8 | 1.271 (4) | C15—C16 | 1.385 (6) |
| O4—C10 | 1.371 (5) | C15—H15 | 0.9300 |
| O4—H4 | 0.8200 | C16—C17 | 1.352 (6) |
| C1—C2 | 1.490 (5) | C16—H16 | 0.9300 |
| C2—C7 | 1.385 (5) | C17—C18 | 1.372 (6) |
| C2—C3 | 1.399 (5) | C17—H17 | 0.9300 |
| C3—C4 | 1.384 (5) | C18—C19 | 1.356 (6) |
| C4—C5 | 1.380 (6) | C18—H18 | 0.9300 |
| C4—H4A | 0.9300 | C19—H19 | 0.9300 |
| C5—C6 | 1.372 (6) | ||
| N1—Cd1—N1i | 89.45 (14) | C5—C6—C7 | 118.8 (4) |
| N1—Cd1—N3i | 145.80 (9) | C5—C6—H6 | 120.6 |
| N1i—Cd1—N3i | 99.48 (10) | C7—C6—H6 | 120.6 |
| N1—Cd1—N3 | 99.48 (10) | C2—C7—C6 | 122.2 (4) |
| N1i—Cd1—N3 | 145.80 (9) | C2—C7—H7 | 118.9 |
| N3i—Cd1—N3 | 91.48 (14) | C6—C7—H7 | 118.9 |
| N1—Cd1—O1 | 68.64 (9) | O3—C8—N1 | 124.5 (3) |
| N1i—Cd1—O1 | 125.88 (9) | O3—C8—C9 | 119.0 (3) |
| N3i—Cd1—O1 | 79.62 (9) | N1—C8—C9 | 116.4 (3) |
| N3—Cd1—O1 | 87.84 (9) | C10—C9—C14 | 117.9 (3) |
| N1—Cd1—O1i | 125.88 (9) | C10—C9—C8 | 120.1 (3) |
| N1i—Cd1—O1i | 68.64 (9) | C14—C9—C8 | 121.9 (3) |
| N3i—Cd1—O1i | 87.84 (9) | O4—C10—C9 | 122.1 (3) |
| N3—Cd1—O1i | 79.62 (9) | O4—C10—C11 | 117.1 (4) |
| O1—Cd1—O1i | 162.04 (12) | C9—C10—C11 | 120.7 (4) |
| C8—N1—N2 | 112.2 (3) | C12—C11—C10 | 118.9 (4) |
| C8—N1—Cd1 | 131.0 (2) | C12—C11—H11 | 120.5 |
| N2—N1—Cd1 | 111.44 (19) | C10—C11—H11 | 120.5 |
| C1—N2—N1 | 119.7 (3) | C13—C12—C11 | 121.0 (4) |
| C1—N2—H2 | 120.1 | C13—C12—H12 | 119.5 |
| N1—N2—H2 | 120.1 | C11—C12—H12 | 119.5 |
| C15—N3—C19 | 117.2 (3) | C12—C13—C14 | 120.4 (4) |
| C15—N3—Cd1 | 120.9 (2) | C12—C13—H13 | 119.8 |
| C19—N3—Cd1 | 121.7 (2) | C14—C13—H13 | 119.8 |
| C1—O1—Cd1 | 113.9 (2) | C13—C14—C9 | 120.9 (4) |
| C3—O2—H2A | 109.5 | C13—C14—H14 | 119.6 |
| C10—O4—H4 | 109.5 | C9—C14—H14 | 119.6 |
| O1—C1—N2 | 121.1 (3) | N3—C15—C16 | 122.3 (4) |
| O1—C1—C2 | 120.4 (3) | N3—C15—H15 | 118.8 |
| N2—C1—C2 | 118.5 (3) | C16—C15—H15 | 118.8 |
| C7—C2—C3 | 118.0 (3) | C17—C16—C15 | 119.2 (4) |
| C7—C2—C1 | 117.0 (3) | C17—C16—H16 | 120.4 |
| C3—C2—C1 | 124.9 (3) | C15—C16—H16 | 120.4 |
| O2—C3—C4 | 121.0 (4) | C16—C17—C18 | 118.8 (4) |
| O2—C3—C2 | 119.2 (3) | C16—C17—H17 | 120.6 |
| C4—C3—C2 | 119.8 (4) | C18—C17—H17 | 120.6 |
| C5—C4—C3 | 120.8 (4) | C19—C18—C17 | 119.1 (4) |
| C5—C4—H4A | 119.6 | C19—C18—H18 | 120.5 |
| C3—C4—H4A | 119.6 | C17—C18—H18 | 120.5 |
| C6—C5—C4 | 120.4 (4) | N3—C19—C18 | 123.3 (4) |
| C6—C5—H5 | 119.8 | N3—C19—H19 | 118.3 |
| C4—C5—H5 | 119.8 | C18—C19—H19 | 118.3 |
| N1i—Cd1—N1—C8 | −39.3 (3) | C7—C2—C3—C4 | 0.2 (5) |
| N3i—Cd1—N1—C8 | −145.5 (3) | C1—C2—C3—C4 | 177.0 (4) |
| N3—Cd1—N1—C8 | 107.5 (3) | O2—C3—C4—C5 | −178.7 (4) |
| O1—Cd1—N1—C8 | −168.6 (3) | C2—C3—C4—C5 | 0.7 (6) |
| O1i—Cd1—N1—C8 | 23.6 (3) | C3—C4—C5—C6 | −1.4 (6) |
| N1i—Cd1—N1—N2 | 112.3 (2) | C4—C5—C6—C7 | 1.2 (6) |
| N3i—Cd1—N1—N2 | 6.1 (3) | C3—C2—C7—C6 | −0.4 (5) |
| N3—Cd1—N1—N2 | −100.9 (2) | C1—C2—C7—C6 | −177.5 (3) |
| O1—Cd1—N1—N2 | −17.02 (19) | C5—C6—C7—C2 | −0.3 (6) |
| O1i—Cd1—N1—N2 | 175.09 (18) | N2—N1—C8—O3 | −1.8 (5) |
| C8—N1—N2—C1 | 172.8 (3) | Cd1—N1—C8—O3 | 149.6 (3) |
| Cd1—N1—N2—C1 | 15.7 (3) | N2—N1—C8—C9 | 180.0 (3) |
| N1—Cd1—N3—C15 | −164.9 (3) | Cd1—N1—C8—C9 | −28.6 (4) |
| N1i—Cd1—N3—C15 | −61.7 (4) | O3—C8—C9—C10 | −30.0 (5) |
| N3i—Cd1—N3—C15 | 47.6 (3) | N1—C8—C9—C10 | 148.3 (3) |
| O1—Cd1—N3—C15 | 127.1 (3) | O3—C8—C9—C14 | 150.3 (4) |
| O1i—Cd1—N3—C15 | −39.9 (3) | N1—C8—C9—C14 | −31.4 (5) |
| N1—Cd1—N3—C19 | 20.6 (3) | C14—C9—C10—O4 | −175.9 (4) |
| N1i—Cd1—N3—C19 | 123.8 (3) | C8—C9—C10—O4 | 4.4 (6) |
| N3i—Cd1—N3—C19 | −126.9 (3) | C14—C9—C10—C11 | 4.1 (6) |
| O1—Cd1—N3—C19 | −47.3 (3) | C8—C9—C10—C11 | −175.6 (4) |
| O1i—Cd1—N3—C19 | 145.6 (3) | O4—C10—C11—C12 | 177.2 (4) |
| N1—Cd1—O1—C1 | 19.5 (2) | C9—C10—C11—C12 | −2.9 (7) |
| N1i—Cd1—O1—C1 | −53.3 (3) | C10—C11—C12—C13 | −0.1 (7) |
| N3i—Cd1—O1—C1 | −147.5 (3) | C11—C12—C13—C14 | 1.6 (7) |
| N3—Cd1—O1—C1 | 120.5 (2) | C12—C13—C14—C9 | −0.2 (6) |
| O1i—Cd1—O1—C1 | 166.0 (2) | C10—C9—C14—C13 | −2.6 (5) |
| Cd1—O1—C1—N2 | −19.3 (4) | C8—C9—C14—C13 | 177.1 (3) |
| Cd1—O1—C1—C2 | 160.3 (2) | C19—N3—C15—C16 | 2.3 (6) |
| N1—N2—C1—O1 | 2.6 (5) | Cd1—N3—C15—C16 | −172.4 (3) |
| N1—N2—C1—C2 | −177.0 (3) | N3—C15—C16—C17 | −2.1 (6) |
| O1—C1—C2—C7 | −1.1 (5) | C15—C16—C17—C18 | 0.6 (6) |
| N2—C1—C2—C7 | 178.5 (3) | C16—C17—C18—C19 | 0.5 (6) |
| O1—C1—C2—C3 | −178.0 (3) | C15—N3—C19—C18 | −1.2 (6) |
| N2—C1—C2—C3 | 1.6 (5) | Cd1—N3—C19—C18 | 173.5 (3) |
| C7—C2—C3—O2 | 179.6 (3) | C17—C18—C19—N3 | −0.2 (7) |
| C1—C2—C3—O2 | −3.5 (5) |
| H··· | ||||
| O4—H4···O3 | 0.82 | 1.92 | 2.638 (4) | 145 |
| N2—H2···O2 | 0.86 | 1.94 | 2.624 (4) | 135 |
| O2—H2A···O3ii | 0.82 | 1.88 | 2.639 (3) | 153 |
Selected bond lengths (Å)
| Cd1—N1 | 2.331 (3) |
| Cd1—N3 | 2.337 (3) |
| Cd1—O1 | 2.389 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O4—H4⋯O3 | 0.82 | 1.92 | 2.638 (4) | 145 |
| N2—H2⋯O2 | 0.86 | 1.94 | 2.624 (4) | 135 |
| O2—H2 | 0.82 | 1.88 | 2.639 (3) | 153 |
Symmetry code: (i) .