Literature DB >> 21580903

Bis[2-hydr-oxy-N'-(2-hydroxy-benzo-yl)benzohydrazitato]dipyridine-cadmium(II).

Yu-Ting Chen, Da-Cheng Li.   

Abstract

The title complex, [Cd(C(14)H(11)N(2)O(4))(2)(C(5)n class="Species">H(5)N)(2)], exhibits crystallographic twofold symmetry. The Cd(II) atom is located on the twofold rotation axis and reveals a slightly distorted octa-hedral coordination defined by four atoms (N(2)O(2)) from two symmetry-related chelate ligands and two pyridine N atoms. Intra-molecular O-H⋯O and N-H⋯O hydrogen bonds stabilize the mol-ecular conformation while inter-molecular O-H⋯O hydrogen bonding links mol-ecules into a triad, generating a helix along the threefold screw axis.

Entities:  

Year:  2008        PMID: 21580903      PMCID: PMC2959594          DOI: 10.1107/S1600536808034533

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Three manganese n class="Chemical">metallacrowns with unsymmetrical aroylhydrazine ligands were synthesized and reported by Dou et al. (2006 ▶) and John et al. (2006 ▶). For the crystal structure of an iron compound with N,N′-bis-picolinoyl hydrazine, see: Bernhardt et al. (2005 ▶). For a nickel complex formed by N,N′-disalicyloylhydrazine, see: Chen et al. (2007 ▶).

Experimental

Crystal data

[Cd(C14H11N2O4)2(C5H5n class="Chemical">N)2] M = 813.10 Trigonal, a = 13.0380 (10) Å c = 18.069 (3) Å V = 2660.0 (5) Å3 Z = 3 Mo Kα radiation μ = 0.68 mm−1 T = 298 (2) K 0.40 × 0.38 × 0.35 mm

Data collection

Bruker SMART 1000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.773, T max = 0.797 13955 measured reflections 3146 independent reflections 2750 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.071 S = 1.00 3146 reflections 241 parameters H-atom parameters constrained Δρmax = 0.90 e Å−3 Δρmin = −0.32 e Å−3 Absolute structure: Flack (1983 ▶), 1353 Friedel pairs Flack parameter: −0.06 (3) Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808034533/kp2188sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808034533/kp2188Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cd(C14H11N2O4)2(C5H5N)2]Dx = 1.523 Mg m3
Mr = 813.10Mo Kα radiation, λ = 0.71073 Å
Trigonal, P3121Cell parameters from 5141 reflections
a = 13.038 (1) Åθ = 2.9–22.9°
c = 18.069 (3) ŵ = 0.68 mm1
V = 2660.0 (5) Å3T = 298 K
Z = 3Block, colourless
F(000) = 12420.40 × 0.38 × 0.35 mm
Bruker SMART 1000 CCD area-detector diffractometer3146 independent reflections
Radiation source: fine-focus sealed tube2750 reflections with I > 2σ(I)
graphiteRint = 0.033
φ and ω scansθmax = 25.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −15→15
Tmin = 0.773, Tmax = 0.797k = −15→15
13955 measured reflectionsl = −21→10
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.027H-atom parameters constrained
wR(F2) = 0.071w = 1/[σ2(Fo2) + (0.041P)2 + 0.5675P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
3146 reflectionsΔρmax = 0.90 e Å3
241 parametersΔρmin = −0.32 e Å3
0 restraintsAbsolute structure: Flack (1983), 1353 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.06 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cd11.00000.45722 (2)0.66670.04088 (11)
N10.8620 (2)0.2612 (2)0.69499 (15)0.0387 (7)
N20.8356 (3)0.2467 (3)0.77051 (14)0.0406 (6)
H20.80050.17710.78970.049*
N30.8726 (2)0.5186 (3)0.61934 (16)0.0449 (7)
O10.9119 (2)0.4418 (2)0.78506 (13)0.0517 (7)
O20.7567 (3)0.1137 (2)0.88928 (14)0.0584 (7)
H2A0.72900.05610.91700.088*
O30.8013 (3)0.06392 (19)0.69676 (12)0.0558 (6)
O40.9060 (3)0.0079 (3)0.59233 (16)0.0797 (10)
H40.87600.00220.63310.120*
C10.8648 (3)0.3405 (3)0.81227 (18)0.0391 (8)
C20.8409 (3)0.3228 (3)0.89327 (19)0.0403 (8)
C30.7918 (3)0.2136 (4)0.9296 (2)0.0454 (9)
C40.7786 (4)0.2086 (4)1.0058 (2)0.0548 (10)
H4A0.74670.13601.02980.066*
C50.8122 (4)0.3102 (4)1.0464 (2)0.0614 (11)
H50.80120.30531.09740.074*
C60.8618 (4)0.4184 (4)1.0120 (2)0.0556 (10)
H60.88580.48721.03930.067*
C70.8753 (3)0.4233 (3)0.9357 (2)0.0477 (9)
H70.90850.49650.91230.057*
C80.8396 (3)0.1621 (3)0.66318 (18)0.0402 (8)
C90.8647 (3)0.1680 (3)0.58281 (18)0.0415 (8)
C100.9002 (4)0.0938 (4)0.5519 (2)0.0547 (10)
C110.9321 (4)0.1039 (4)0.4769 (2)0.0687 (13)
H110.95920.05620.45680.082*
C120.9225 (4)0.1852 (4)0.4338 (2)0.0673 (12)
H120.94350.19260.38410.081*
C130.8832 (4)0.2547 (4)0.4624 (2)0.0629 (12)
H130.87540.30800.43200.075*
C140.8542 (3)0.2472 (4)0.5364 (2)0.0516 (9)
H140.82740.29580.55550.062*
C150.9145 (4)0.6185 (4)0.5806 (2)0.0550 (10)
H150.99420.65870.56750.066*
C160.8437 (4)0.6645 (4)0.5591 (2)0.0636 (12)
H160.87600.73580.53340.076*
C170.7270 (4)0.6045 (4)0.5759 (2)0.0627 (12)
H170.67770.63350.56160.075*
C180.6827 (3)0.5002 (4)0.6144 (2)0.0591 (11)
H180.60260.45700.62630.071*
C190.7572 (3)0.4610 (3)0.6349 (2)0.0535 (9)
H190.72620.39030.66120.064*
U11U22U33U12U13U23
Cd10.0445 (2)0.03796 (14)0.04239 (18)0.02224 (11)0.00869 (17)0.00434 (9)
N10.0392 (17)0.0368 (16)0.0340 (15)0.0144 (14)0.0019 (12)0.0033 (12)
N20.0437 (16)0.0396 (16)0.0347 (15)0.0179 (13)0.0072 (13)0.0058 (14)
N30.0448 (18)0.0430 (17)0.0494 (17)0.0236 (15)0.0064 (13)0.0045 (14)
O10.0692 (18)0.0398 (14)0.0459 (15)0.0271 (13)0.0147 (13)0.0067 (12)
O20.080 (2)0.0438 (15)0.0434 (15)0.0254 (14)0.0077 (13)0.0107 (13)
O30.0734 (19)0.0376 (13)0.0493 (14)0.0223 (15)0.0222 (15)0.0080 (11)
O40.118 (3)0.081 (2)0.066 (2)0.070 (2)0.0278 (19)0.0082 (17)
C10.0388 (19)0.041 (2)0.041 (2)0.0226 (17)0.0035 (16)0.0036 (17)
C20.042 (2)0.049 (2)0.0364 (18)0.0282 (17)0.0029 (15)0.0027 (16)
C30.044 (2)0.056 (2)0.042 (2)0.0290 (18)0.0009 (16)0.0031 (18)
C40.065 (3)0.066 (3)0.042 (2)0.040 (2)0.0030 (19)0.012 (2)
C50.074 (3)0.092 (4)0.037 (2)0.055 (3)0.005 (2)0.006 (2)
C60.064 (3)0.073 (3)0.048 (2)0.048 (2)−0.0070 (19)−0.011 (2)
C70.055 (2)0.049 (2)0.049 (2)0.0344 (19)0.0047 (17)0.0020 (17)
C80.0341 (18)0.0382 (17)0.0420 (17)0.0133 (15)0.0033 (15)0.0030 (14)
C90.038 (2)0.0391 (17)0.0363 (16)0.0113 (17)0.0027 (16)−0.0017 (13)
C100.063 (3)0.049 (2)0.047 (2)0.025 (2)0.005 (2)−0.0025 (18)
C110.077 (3)0.076 (3)0.046 (2)0.033 (3)0.011 (2)−0.011 (2)
C120.065 (3)0.073 (3)0.039 (2)0.016 (2)0.004 (2)−0.006 (2)
C130.065 (3)0.061 (2)0.040 (2)0.014 (2)−0.010 (2)0.0026 (18)
C140.047 (2)0.044 (2)0.050 (2)0.0129 (17)−0.0035 (18)−0.0011 (19)
C150.050 (2)0.056 (2)0.060 (3)0.027 (2)0.0090 (18)0.012 (2)
C160.069 (3)0.067 (3)0.062 (2)0.040 (2)0.007 (2)0.025 (2)
C170.065 (3)0.088 (3)0.053 (2)0.051 (3)−0.006 (2)0.002 (2)
C180.041 (2)0.074 (3)0.062 (3)0.028 (2)−0.0012 (19)−0.007 (2)
C190.048 (2)0.044 (2)0.063 (2)0.0198 (19)0.0099 (19)0.0037 (19)
Cd1—N12.331 (3)C5—H50.9300
Cd1—N1i2.331 (3)C6—C71.387 (5)
Cd1—N3i2.337 (3)C6—H60.9300
Cd1—N32.337 (3)C7—H70.9300
Cd1—O12.389 (2)C8—C91.482 (4)
Cd1—O1i2.389 (2)C9—C101.382 (5)
N1—C81.307 (4)C9—C141.389 (5)
N1—N21.397 (4)C10—C111.404 (5)
N2—C11.320 (4)C11—C121.371 (6)
N2—H20.8600C11—H110.9300
N3—C151.332 (5)C12—C131.346 (6)
N3—C191.333 (5)C12—H120.9300
O1—C11.245 (4)C13—C141.380 (5)
O2—C31.357 (4)C13—H130.9300
O2—H2A0.8200C14—H140.9300
O3—C81.271 (4)C15—C161.385 (6)
O4—C101.371 (5)C15—H150.9300
O4—H40.8200C16—C171.352 (6)
C1—C21.490 (5)C16—H160.9300
C2—C71.385 (5)C17—C181.372 (6)
C2—C31.399 (5)C17—H170.9300
C3—C41.384 (5)C18—C191.356 (6)
C4—C51.380 (6)C18—H180.9300
C4—H4A0.9300C19—H190.9300
C5—C61.372 (6)
N1—Cd1—N1i89.45 (14)C5—C6—C7118.8 (4)
N1—Cd1—N3i145.80 (9)C5—C6—H6120.6
N1i—Cd1—N3i99.48 (10)C7—C6—H6120.6
N1—Cd1—N399.48 (10)C2—C7—C6122.2 (4)
N1i—Cd1—N3145.80 (9)C2—C7—H7118.9
N3i—Cd1—N391.48 (14)C6—C7—H7118.9
N1—Cd1—O168.64 (9)O3—C8—N1124.5 (3)
N1i—Cd1—O1125.88 (9)O3—C8—C9119.0 (3)
N3i—Cd1—O179.62 (9)N1—C8—C9116.4 (3)
N3—Cd1—O187.84 (9)C10—C9—C14117.9 (3)
N1—Cd1—O1i125.88 (9)C10—C9—C8120.1 (3)
N1i—Cd1—O1i68.64 (9)C14—C9—C8121.9 (3)
N3i—Cd1—O1i87.84 (9)O4—C10—C9122.1 (3)
N3—Cd1—O1i79.62 (9)O4—C10—C11117.1 (4)
O1—Cd1—O1i162.04 (12)C9—C10—C11120.7 (4)
C8—N1—N2112.2 (3)C12—C11—C10118.9 (4)
C8—N1—Cd1131.0 (2)C12—C11—H11120.5
N2—N1—Cd1111.44 (19)C10—C11—H11120.5
C1—N2—N1119.7 (3)C13—C12—C11121.0 (4)
C1—N2—H2120.1C13—C12—H12119.5
N1—N2—H2120.1C11—C12—H12119.5
C15—N3—C19117.2 (3)C12—C13—C14120.4 (4)
C15—N3—Cd1120.9 (2)C12—C13—H13119.8
C19—N3—Cd1121.7 (2)C14—C13—H13119.8
C1—O1—Cd1113.9 (2)C13—C14—C9120.9 (4)
C3—O2—H2A109.5C13—C14—H14119.6
C10—O4—H4109.5C9—C14—H14119.6
O1—C1—N2121.1 (3)N3—C15—C16122.3 (4)
O1—C1—C2120.4 (3)N3—C15—H15118.8
N2—C1—C2118.5 (3)C16—C15—H15118.8
C7—C2—C3118.0 (3)C17—C16—C15119.2 (4)
C7—C2—C1117.0 (3)C17—C16—H16120.4
C3—C2—C1124.9 (3)C15—C16—H16120.4
O2—C3—C4121.0 (4)C16—C17—C18118.8 (4)
O2—C3—C2119.2 (3)C16—C17—H17120.6
C4—C3—C2119.8 (4)C18—C17—H17120.6
C5—C4—C3120.8 (4)C19—C18—C17119.1 (4)
C5—C4—H4A119.6C19—C18—H18120.5
C3—C4—H4A119.6C17—C18—H18120.5
C6—C5—C4120.4 (4)N3—C19—C18123.3 (4)
C6—C5—H5119.8N3—C19—H19118.3
C4—C5—H5119.8C18—C19—H19118.3
N1i—Cd1—N1—C8−39.3 (3)C7—C2—C3—C40.2 (5)
N3i—Cd1—N1—C8−145.5 (3)C1—C2—C3—C4177.0 (4)
N3—Cd1—N1—C8107.5 (3)O2—C3—C4—C5−178.7 (4)
O1—Cd1—N1—C8−168.6 (3)C2—C3—C4—C50.7 (6)
O1i—Cd1—N1—C823.6 (3)C3—C4—C5—C6−1.4 (6)
N1i—Cd1—N1—N2112.3 (2)C4—C5—C6—C71.2 (6)
N3i—Cd1—N1—N26.1 (3)C3—C2—C7—C6−0.4 (5)
N3—Cd1—N1—N2−100.9 (2)C1—C2—C7—C6−177.5 (3)
O1—Cd1—N1—N2−17.02 (19)C5—C6—C7—C2−0.3 (6)
O1i—Cd1—N1—N2175.09 (18)N2—N1—C8—O3−1.8 (5)
C8—N1—N2—C1172.8 (3)Cd1—N1—C8—O3149.6 (3)
Cd1—N1—N2—C115.7 (3)N2—N1—C8—C9180.0 (3)
N1—Cd1—N3—C15−164.9 (3)Cd1—N1—C8—C9−28.6 (4)
N1i—Cd1—N3—C15−61.7 (4)O3—C8—C9—C10−30.0 (5)
N3i—Cd1—N3—C1547.6 (3)N1—C8—C9—C10148.3 (3)
O1—Cd1—N3—C15127.1 (3)O3—C8—C9—C14150.3 (4)
O1i—Cd1—N3—C15−39.9 (3)N1—C8—C9—C14−31.4 (5)
N1—Cd1—N3—C1920.6 (3)C14—C9—C10—O4−175.9 (4)
N1i—Cd1—N3—C19123.8 (3)C8—C9—C10—O44.4 (6)
N3i—Cd1—N3—C19−126.9 (3)C14—C9—C10—C114.1 (6)
O1—Cd1—N3—C19−47.3 (3)C8—C9—C10—C11−175.6 (4)
O1i—Cd1—N3—C19145.6 (3)O4—C10—C11—C12177.2 (4)
N1—Cd1—O1—C119.5 (2)C9—C10—C11—C12−2.9 (7)
N1i—Cd1—O1—C1−53.3 (3)C10—C11—C12—C13−0.1 (7)
N3i—Cd1—O1—C1−147.5 (3)C11—C12—C13—C141.6 (7)
N3—Cd1—O1—C1120.5 (2)C12—C13—C14—C9−0.2 (6)
O1i—Cd1—O1—C1166.0 (2)C10—C9—C14—C13−2.6 (5)
Cd1—O1—C1—N2−19.3 (4)C8—C9—C14—C13177.1 (3)
Cd1—O1—C1—C2160.3 (2)C19—N3—C15—C162.3 (6)
N1—N2—C1—O12.6 (5)Cd1—N3—C15—C16−172.4 (3)
N1—N2—C1—C2−177.0 (3)N3—C15—C16—C17−2.1 (6)
O1—C1—C2—C7−1.1 (5)C15—C16—C17—C180.6 (6)
N2—C1—C2—C7178.5 (3)C16—C17—C18—C190.5 (6)
O1—C1—C2—C3−178.0 (3)C15—N3—C19—C18−1.2 (6)
N2—C1—C2—C31.6 (5)Cd1—N3—C19—C18173.5 (3)
C7—C2—C3—O2179.6 (3)C17—C18—C19—N3−0.2 (7)
C1—C2—C3—O2−3.5 (5)
D—H···AD—HH···AD···AD—H···A
O4—H4···O30.821.922.638 (4)145
N2—H2···O20.861.942.624 (4)135
O2—H2A···O3ii0.821.882.639 (3)153
Table 1

Selected bond lengths (Å)

Cd1—N12.331 (3)
Cd1—N32.337 (3)
Cd1—O12.389 (2)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4⋯O30.821.922.638 (4)145
N2—H2⋯O20.861.942.624 (4)135
O2—H2A⋯O3i0.821.882.639 (3)153

Symmetry code: (i) .

  3 in total

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Rohith P John; Jaejoon Park; Dohyun Moon; Kyungjin Lee; Myoung Soo Lah
Journal:  Chem Commun (Camb)       Date:  2006-07-31       Impact factor: 6.222

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  3 in total

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