Literature DB >> 21580897

Bis(2,2'-bipyridine-κN,N')(croconato-κO,O')nickel(II).

Hong-Feng Chen1, Qi Fang, Wen-Tao Yu.   

Abstract

The title compound, [Ni(C(5)O(5))(C(10)H(8)N(2))(2)], lies across a crystallographic twofold axis, around which two 2,2'-bipyridine (2,2'-bipy) ligands are arranged in a propeller manner. The local geometry of the NiN(4)O(2) coordination core basically adopts an octa-hedral geometry. The mol-ecular twofold axis is along the direction of the mol-ecular dipole moment, and the complex is packed with its dipole moment alternately along the +b and -b directions. The crystal structure is stabilized by inter-molecular C-H⋯O hydrogen bonds.

Entities:  

Year:  2008        PMID: 21580897      PMCID: PMC2959560          DOI: 10.1107/S1600536808033771

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Chen et al. (2008 ▶). For related structures, see: Chen et al. (2005 ▶, 2007 ▶). For other related literature, see: Coronado et al. (2007 ▶); Wang et al. (2002 ▶).

Experimental

Crystal data

[Ni(C5O5)(C10H8N2)2] M = 511.13 Orthorhombic, a = 12.725 (5) Å b = 10.752 (5) Å c = 15.733 (5) Å V = 2152.6 (15) Å3 Z = 4 Mo Kα radiation μ = 0.95 mm−1 T = 293 (2) K 0.20 × 0.19 × 0.10 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (APEX2; Bruker, 2005 ▶) T min = 0.821, T max = 0.902 10055 measured reflections 2466 independent reflections 1536 reflections with I > 2σ(I) R int = 0.089

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.102 S = 1.02 2466 reflections 160 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.38 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2; data reduction: APEX2; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808033771/lx2071sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808033771/lx2071Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C5O5)(C10H8N2)2]F(000) = 1048
Mr = 511.13Dx = 1.577 Mg m3
Orthorhombic, PbcnMo Kα radiation, λ = 0.71069 Å
Hall symbol: -P_2n 2abCell parameters from 2518 reflections
a = 12.725 (5) Åθ = 2.5–23.4°
b = 10.752 (5) ŵ = 0.95 mm1
c = 15.733 (5) ÅT = 293 K
V = 2152.6 (15) Å3Prism, green-yellow
Z = 40.20 × 0.19 × 0.10 mm
Bruker APEXII CCD diffractometer2466 independent reflections
Radiation source: fine-focus sealed tube1536 reflections with I > 2σ(I)
graphiteRint = 0.089
Detector resolution: 10.0 pixels mm-1θmax = 27.5°, θmin = 2.5°
φ and ω scansh = −15→16
Absorption correction: multi-scan (APEX2; Bruker, 2005)k = −13→10
Tmin = 0.821, Tmax = 0.902l = −20→19
10055 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.102H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0372P)2 + 0.0108P] where P = (Fo2 + 2Fc2)/3
2466 reflections(Δ/σ)max < 0.001
160 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.38 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.50000.46011 (4)0.25000.03546 (17)
O10.56048 (15)0.31353 (15)0.17633 (10)0.0439 (5)
O20.6016 (2)0.0512 (2)0.12408 (16)0.1053 (10)
O30.5000−0.1097 (3)0.25000.0700 (9)
N10.45364 (18)0.58822 (19)0.34037 (12)0.0397 (5)
N20.63184 (17)0.46676 (19)0.32573 (12)0.0419 (6)
C10.3650 (3)0.6535 (3)0.34092 (17)0.0531 (8)
H10.31730.64100.29700.064*
C20.3402 (3)0.7384 (3)0.4029 (2)0.0717 (10)
H20.27740.78240.40130.086*
C30.4114 (4)0.7561 (3)0.4673 (2)0.0742 (11)
H30.39770.81420.50970.089*
C40.5025 (3)0.6888 (3)0.46926 (18)0.0570 (9)
H40.55020.69890.51350.068*
C50.5226 (2)0.6052 (2)0.40425 (15)0.0406 (7)
C60.6200 (2)0.5320 (2)0.39824 (16)0.0431 (7)
C70.6964 (3)0.5264 (3)0.4613 (2)0.0638 (9)
H70.68720.56960.51190.077*
C80.7854 (3)0.4569 (4)0.4486 (2)0.0770 (12)
H80.83670.45260.49060.092*
C90.7982 (2)0.3940 (3)0.3737 (2)0.0679 (10)
H90.85870.34790.36330.081*
C100.7195 (2)0.4008 (3)0.31437 (19)0.0575 (8)
H100.72760.35720.26370.069*
C110.5300 (2)0.2129 (3)0.21214 (15)0.0393 (6)
C120.5511 (3)0.0864 (3)0.18605 (18)0.0530 (8)
C130.50000.0035 (4)0.25000.0487 (10)
U11U22U33U12U13U23
Ni10.0404 (3)0.0388 (3)0.0271 (2)0.000−0.0053 (2)0.000
O10.0587 (13)0.0418 (11)0.0310 (9)−0.0040 (10)0.0083 (9)0.0013 (8)
O20.167 (3)0.0586 (15)0.0903 (17)−0.0026 (15)0.0769 (19)−0.0177 (13)
O30.086 (2)0.0405 (17)0.084 (2)0.0000.0118 (18)0.000
N10.0510 (14)0.0360 (12)0.0322 (11)−0.0008 (12)−0.0020 (11)0.0015 (10)
N20.0437 (14)0.0480 (14)0.0340 (12)0.0003 (12)−0.0082 (10)0.0017 (10)
C10.064 (2)0.0507 (18)0.0443 (16)0.0138 (17)0.0003 (16)0.0011 (14)
C20.098 (3)0.057 (2)0.060 (2)0.024 (2)0.022 (2)−0.0018 (17)
C30.119 (3)0.048 (2)0.056 (2)−0.002 (2)0.028 (2)−0.0121 (16)
C40.084 (2)0.0514 (17)0.0359 (15)−0.022 (2)0.0095 (16)−0.0076 (13)
C50.0582 (19)0.0341 (14)0.0295 (13)−0.0130 (14)0.0012 (12)0.0026 (11)
C60.0535 (18)0.0442 (16)0.0317 (14)−0.0198 (15)−0.0080 (13)0.0070 (13)
C70.076 (2)0.068 (2)0.0482 (18)−0.023 (2)−0.0272 (17)0.0038 (15)
C80.065 (2)0.090 (3)0.076 (3)−0.023 (2)−0.041 (2)0.033 (2)
C90.0442 (18)0.080 (3)0.079 (2)0.0036 (19)−0.0144 (18)0.026 (2)
C100.0494 (19)0.067 (2)0.0555 (19)0.0078 (18)−0.0081 (15)0.0055 (16)
C110.0431 (17)0.0439 (16)0.0309 (13)−0.0025 (14)−0.0005 (11)−0.0019 (12)
C120.066 (2)0.0462 (17)0.0463 (17)−0.0038 (17)0.0129 (16)−0.0085 (14)
C130.052 (2)0.042 (2)0.052 (2)0.0000.000 (2)0.000
Ni1—N22.059 (2)C3—C41.367 (4)
Ni1—N2i2.059 (2)C3—H30.9300
Ni1—N12.066 (2)C4—C51.385 (4)
Ni1—N1i2.066 (2)C4—H40.9300
Ni1—O1i2.1022 (18)C5—C61.472 (4)
Ni1—O12.1022 (18)C6—C71.389 (4)
O1—C111.280 (3)C7—C81.371 (5)
O2—C121.227 (3)C7—H70.9300
O3—C131.217 (5)C8—C91.369 (5)
N1—C11.328 (3)C8—H80.9300
N1—C51.347 (3)C9—C101.370 (4)
N2—C101.334 (3)C9—H90.9300
N2—C61.347 (3)C10—H100.9300
C1—C21.372 (4)C11—C11i1.415 (5)
C1—H10.9300C11—C121.446 (4)
C2—C31.373 (5)C12—C131.493 (4)
C2—H20.9300C13—C12i1.493 (4)
N2—Ni1—N2i176.02 (12)C3—C4—C5118.9 (3)
N2—Ni1—N179.12 (9)C3—C4—H4120.6
N2i—Ni1—N198.19 (8)C5—C4—H4120.6
N2—Ni1—N1i98.19 (8)N1—C5—C4121.3 (3)
N2i—Ni1—N1i79.12 (9)N1—C5—C6115.4 (2)
N1—Ni1—N1i96.35 (11)C4—C5—C6123.3 (3)
N2—Ni1—O1i90.30 (8)N2—C6—C7120.2 (3)
N2i—Ni1—O1i92.68 (8)N2—C6—C5115.3 (2)
N1—Ni1—O1i90.91 (8)C7—C6—C5124.5 (3)
N1i—Ni1—O1i169.72 (7)C8—C7—C6119.8 (3)
N2—Ni1—O192.68 (8)C8—C7—H7120.1
N2i—Ni1—O190.30 (8)C6—C7—H7120.1
N1—Ni1—O1169.72 (7)C9—C8—C7119.5 (3)
N1i—Ni1—O190.91 (8)C9—C8—H8120.2
O1i—Ni1—O182.88 (10)C7—C8—H8120.2
C11—O1—Ni1106.29 (15)C8—C9—C10118.2 (3)
C1—N1—C5118.5 (2)C8—C9—H9120.9
C1—N1—Ni1126.82 (19)C10—C9—H9120.9
C5—N1—Ni1114.72 (18)N2—C10—C9123.2 (3)
C10—N2—C6118.9 (2)N2—C10—H10118.4
C10—N2—Ni1125.83 (19)C9—C10—H10118.4
C6—N2—Ni1114.66 (19)O1—C11—C11i122.26 (14)
N1—C1—C2123.5 (3)O1—C11—C12127.9 (2)
N1—C1—H1118.3C11i—C11—C12109.83 (15)
C2—C1—H1118.3O2—C12—C11127.8 (3)
C1—C2—C3117.7 (3)O2—C12—C13125.4 (3)
C1—C2—H2121.1C11—C12—C13106.8 (2)
C3—C2—H2121.1O3—C13—C12i126.64 (17)
C4—C3—C2120.2 (3)O3—C13—C12126.64 (17)
C4—C3—H3119.9C12i—C13—C12106.7 (3)
C2—C3—H3119.9
N2—Ni1—O1—C1190.49 (17)C1—N1—C5—C6−178.6 (2)
N2i—Ni1—O1—C11−92.14 (18)Ni1—N1—C5—C61.2 (3)
N1—Ni1—O1—C1153.7 (5)C3—C4—C5—N1−1.0 (4)
N1i—Ni1—O1—C11−171.27 (17)C3—C4—C5—C6177.3 (3)
O1i—Ni1—O1—C110.52 (13)C10—N2—C6—C7−2.5 (4)
N2—Ni1—N1—C1174.7 (2)Ni1—N2—C6—C7169.1 (2)
N2i—Ni1—N1—C1−2.3 (2)C10—N2—C6—C5178.1 (2)
N1i—Ni1—N1—C177.5 (2)Ni1—N2—C6—C5−10.3 (3)
O1i—Ni1—N1—C1−95.2 (2)N1—C5—C6—N26.1 (3)
O1—Ni1—N1—C1−147.8 (4)C4—C5—C6—N2−172.3 (2)
N2—Ni1—N1—C5−5.04 (17)N1—C5—C6—C7−173.3 (2)
N2i—Ni1—N1—C5177.93 (18)C4—C5—C6—C78.3 (4)
N1i—Ni1—N1—C5−102.20 (19)N2—C6—C7—C81.8 (4)
O1i—Ni1—N1—C585.09 (18)C5—C6—C7—C8−178.8 (3)
O1—Ni1—N1—C532.5 (5)C6—C7—C8—C90.2 (5)
N1—Ni1—N2—C10179.3 (2)C7—C8—C9—C10−1.5 (5)
N1i—Ni1—N2—C10−85.7 (2)C6—N2—C10—C91.2 (4)
O1i—Ni1—N2—C1088.5 (2)Ni1—N2—C10—C9−169.4 (2)
O1—Ni1—N2—C105.6 (2)C8—C9—C10—N20.8 (5)
N1—Ni1—N2—C68.43 (17)Ni1—O1—C11—C11i−1.5 (4)
N1i—Ni1—N2—C6103.37 (17)Ni1—O1—C11—C12−179.9 (2)
O1i—Ni1—N2—C6−82.44 (17)O1—C11—C12—O2−0.7 (5)
O1—Ni1—N2—C6−165.32 (17)C11i—C11—C12—O2−179.3 (3)
C5—N1—C1—C20.6 (4)O1—C11—C12—C13178.9 (2)
Ni1—N1—C1—C2−179.1 (2)C11i—C11—C12—C130.3 (4)
N1—C1—C2—C30.1 (5)O2—C12—C13—O3−0.6 (4)
C1—C2—C3—C4−1.2 (5)C11—C12—C13—O3179.89 (13)
C2—C3—C4—C51.7 (5)O2—C12—C13—C12i179.4 (4)
C1—N1—C5—C4−0.1 (4)C11—C12—C13—C12i−0.11 (13)
Ni1—N1—C5—C4179.63 (19)
D—H···AD—HH···AD···AD—H···A
C4—H4···O1ii0.932.573.340 (4)141
C8—H8···O2iii0.932.243.114 (4)156
C9—H9···O3iv0.932.573.222 (4)127
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4⋯O1i0.932.573.340 (4)141
C8—H8⋯O2ii0.932.243.114 (4)156
C9—H9⋯O3iii0.932.573.222 (4)127

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  Synthesis and structural characterization of [Na(2)M(C(5)O(5))(2)(H(2)O)(2)] x 4H(2)O (M = Ni(II), Cu(II)).

Authors:  Chih-Chieh Wang; Cheng-Han Yang; Gene-Hsiang Lee
Journal:  Inorg Chem       Date:  2002-02-25       Impact factor: 5.165

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Poly[[di-mu2-aqua-di-mu5-croconato(2-)-nickel(II)dipotassium(I)] tetrahydrate].

Authors:  Hong-Yu Chen; Qi Fang; Gang Xue; Wen-Tao Yu
Journal:  Acta Crystallogr C       Date:  2005-11-19       Impact factor: 1.172

4.  (Croconato-κO,O')bis-(1,10-phenanthroline-κN,N')manganese(II).

Authors:  Hong-Feng Chen; Hong-Yu Chen; Xia Chen; Andrei S Batsanov; Qi Fang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-12

5.  New BEDT-TTF/[Fe(C5O5)3]3- hybrid system: synthesis, crystal structure, and physical properties of a chirality-induced alpha phase and a novel magnetic molecular metal.

Authors:  Eugenio Coronado; Simona Curreli; Carlos Giménez-Saiz; Carlos J Gómez-García; Paola Deplano; Maria Laura Mercuri; Angela Serpe; Luca Pilia; Christophe Faulmann; Enric Canadell
Journal:  Inorg Chem       Date:  2007-04-28       Impact factor: 5.165

6.  (Croconato-kappa2O,O')bis(1,10-phenanthroline-kappa2N,N')cobalt(II), and the nickel(II) and copper(II) analogues.

Authors:  Xia Chen; Hong-Feng Chen; Gang Xue; Hong-Yu Chen; Wen-Tao Yu; Qi Fang
Journal:  Acta Crystallogr C       Date:  2007-03-31       Impact factor: 1.172

  6 in total

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