| Literature DB >> 21580863 |
Abstract
In the title compound, {[Co(C(7)H(3)NO(5))(C(13)H(14)N(2))(H(2)O)]·2H(2)O}(n), the Co(II) atom is coordinated by two O atoms from a pyridine-2,6-dicarboxyl-ate N-oxide ligand, two N atoms from two 1,3-di-4-pyridylpropane ligands and one water mol-ecule, and displays a distorted square-pyramidal coordination geometry. The 1,3-di-4-pyridylpropane ligands link the Co(II) atoms into an infinite zigzag chain parallel to [010]. The chains are further linked through O-H⋯O and C-H⋯O hydrogen bonds, forming a three-dimensional supra-molecular network.Entities:
Year: 2008 PMID: 21580863 PMCID: PMC2959606 DOI: 10.1107/S1600536808032741
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Co(C7H3NO5)(C13H14N2)(H2O)]·2H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 5837 reflections |
| θ = 2.8–27.9° | |
| µ = 0.84 mm−1 | |
| β = 90.521 (2)° | Block, colorless |
| 0.35 × 0.29 × 0.25 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 3897 independent reflections |
| Radiation source: fine-focus sealed tube | 2170 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.2°, θmin = 2.0° |
| Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | |
| 10818 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 3897 reflections | Δρmax = 0.66 e Å−3 |
| 290 parameters | Δρmin = −0.40 e Å−3 |
| 9 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0030 (8) |
| O4 | 0.3287 (4) | −0.0221 (4) | 0.4108 (2) | 0.0776 (13) | |
| N3 | 0.2102 (4) | 1.1756 (4) | 0.1902 (2) | 0.0519 (11) | |
| C19 | 0.2965 (6) | 1.0894 (5) | 0.1927 (3) | 0.0622 (16) | |
| H19 | 0.3729 | 1.1009 | 0.2194 | 0.075* | |
| C20 | 0.2794 (6) | 0.9841 (5) | 0.1583 (3) | 0.0609 (15) | |
| H20 | 0.3432 | 0.9272 | 0.1621 | 0.073* | |
| C18 | 0.1003 (5) | 1.1549 (5) | 0.1514 (3) | 0.0568 (15) | |
| H18 | 0.0376 | 1.2129 | 0.1486 | 0.068* | |
| C17 | 0.0769 (6) | 1.0515 (5) | 0.1159 (3) | 0.0597 (15) | |
| H17 | −0.0007 | 1.0411 | 0.0902 | 0.072* | |
| C16 | 0.1677 (5) | 0.9631 (5) | 0.1180 (3) | 0.0565 (14) | |
| C15 | 0.1470 (6) | 0.8479 (5) | 0.0794 (3) | 0.0647 (16) | |
| H15A | 0.1842 | 0.8532 | 0.0310 | 0.078* | |
| H15B | 0.1948 | 0.7885 | 0.1059 | 0.078* | |
| Co1 | 0.24328 (6) | 0.32149 (5) | 0.24652 (3) | 0.0423 (3) | |
| O5 | 0.2788 (4) | 0.2215 (3) | 0.32898 (19) | 0.0565 (10) | |
| N2 | 0.1568 (4) | 0.4237 (4) | 0.1728 (2) | 0.0522 (11) | |
| O2 | 0.2658 (5) | 0.5550 (4) | 0.4120 (2) | 0.0892 (15) | |
| O1 | 0.2384 (4) | 0.4531 (3) | 0.3113 (2) | 0.0777 (13) | |
| O3 | 0.4937 (4) | 0.0354 (3) | 0.3417 (2) | 0.0761 (12) | |
| C6 | 0.3381 (5) | 0.3644 (5) | 0.4174 (3) | 0.0513 (14) | |
| C12 | 0.1618 (6) | 0.5381 (5) | 0.0652 (3) | 0.0593 (15) | |
| H12 | 0.2043 | 0.5575 | 0.0223 | 0.071* | |
| N1 | 0.3424 (4) | 0.2545 (4) | 0.3900 (2) | 0.0494 (11) | |
| C3 | 0.4691 (6) | 0.1910 (6) | 0.4901 (3) | 0.0702 (18) | |
| H3 | 0.5156 | 0.1326 | 0.5137 | 0.084* | |
| C7 | 0.2755 (6) | 0.4653 (5) | 0.3766 (3) | 0.0607 (15) | |
| C2 | 0.4082 (5) | 0.1683 (5) | 0.4248 (3) | 0.0496 (13) | |
| C13 | −0.0066 (6) | 0.6897 (4) | 0.0347 (3) | 0.0660 (17) | |
| H13A | −0.0981 | 0.6750 | 0.0252 | 0.079* | |
| H13B | 0.0381 | 0.6903 | −0.0117 | 0.079* | |
| C10 | 0.0487 (5) | 0.5928 (5) | 0.0824 (3) | 0.0540 (14) | |
| C1 | 0.4076 (6) | 0.0499 (5) | 0.3885 (3) | 0.0559 (14) | |
| C5 | 0.3971 (6) | 0.3843 (5) | 0.4831 (3) | 0.0664 (16) | |
| H5 | 0.3931 | 0.4585 | 0.5029 | 0.080* | |
| C11 | 0.2145 (5) | 0.4541 (5) | 0.1107 (3) | 0.0547 (14) | |
| H11 | 0.2918 | 0.4180 | 0.0976 | 0.066* | |
| C8 | 0.0451 (6) | 0.4774 (5) | 0.1890 (3) | 0.0675 (17) | |
| H8 | 0.0037 | 0.4577 | 0.2322 | 0.081* | |
| C4 | 0.4619 (6) | 0.2997 (6) | 0.5211 (3) | 0.0730 (18) | |
| H4 | 0.4999 | 0.3150 | 0.5663 | 0.088* | |
| C9 | −0.0109 (6) | 0.5589 (5) | 0.1456 (3) | 0.0653 (16) | |
| H9 | −0.0899 | 0.5918 | 0.1587 | 0.078* | |
| C14 | 0.0088 (6) | 0.8095 (4) | 0.0717 (3) | 0.0641 (17) | |
| H14A | −0.0387 | 0.8667 | 0.0432 | 0.077* | |
| H14B | −0.0299 | 0.8064 | 0.1198 | 0.077* | |
| O1W | 0.4465 (4) | 0.3311 (4) | 0.2130 (3) | 0.0969 (16) | |
| H1W | 0.4767 | 0.3944 | 0.2011 | 0.145* | |
| H2W | 0.4891 | 0.3034 | 0.2471 | 0.145* | |
| O2W | 0.6417 (5) | 0.2145 (5) | 0.2840 (3) | 0.1170 (19) | |
| H3W | 0.6669 | 0.1724 | 0.2494 | 0.175* | |
| H4W | 0.5887 | 0.1753 | 0.3084 | 0.175* | |
| O3W | 0.2003 (5) | 0.7719 (5) | 0.3494 (4) | 0.141 (2) | |
| H5W | 0.2281 | 0.7061 | 0.3618 | 0.212* | |
| H6W | 0.2190 | 0.8220 | 0.3795 | 0.212* |
| O4 | 0.089 (3) | 0.053 (3) | 0.091 (3) | −0.012 (2) | 0.005 (2) | 0.013 (2) |
| N3 | 0.058 (3) | 0.044 (3) | 0.053 (3) | 0.005 (2) | −0.012 (2) | 0.000 (2) |
| C19 | 0.074 (4) | 0.043 (4) | 0.069 (4) | 0.008 (3) | −0.015 (3) | −0.002 (3) |
| C20 | 0.066 (4) | 0.045 (4) | 0.071 (4) | 0.008 (3) | −0.010 (3) | −0.005 (3) |
| C18 | 0.061 (4) | 0.038 (3) | 0.071 (4) | 0.006 (3) | −0.012 (3) | 0.002 (3) |
| C17 | 0.070 (4) | 0.038 (3) | 0.071 (4) | −0.008 (3) | −0.014 (3) | −0.004 (3) |
| C16 | 0.067 (4) | 0.043 (3) | 0.059 (3) | 0.003 (3) | −0.002 (3) | −0.003 (3) |
| C15 | 0.080 (4) | 0.045 (4) | 0.069 (4) | −0.005 (3) | −0.003 (3) | −0.004 (3) |
| Co1 | 0.0543 (5) | 0.0245 (4) | 0.0478 (4) | 0.0021 (3) | −0.0085 (3) | 0.0006 (3) |
| O5 | 0.075 (3) | 0.040 (2) | 0.054 (2) | 0.0000 (19) | −0.0150 (19) | −0.0013 (18) |
| N2 | 0.059 (3) | 0.042 (3) | 0.056 (3) | 0.001 (2) | −0.002 (2) | −0.003 (2) |
| O2 | 0.133 (4) | 0.046 (3) | 0.088 (3) | 0.019 (3) | −0.033 (3) | −0.024 (2) |
| O1 | 0.121 (4) | 0.039 (2) | 0.072 (3) | 0.010 (2) | −0.026 (3) | −0.005 (2) |
| O3 | 0.074 (3) | 0.048 (3) | 0.107 (3) | 0.005 (2) | 0.022 (3) | −0.008 (2) |
| C6 | 0.055 (3) | 0.040 (3) | 0.059 (3) | 0.007 (3) | −0.009 (3) | −0.008 (3) |
| C12 | 0.080 (4) | 0.048 (4) | 0.050 (3) | −0.005 (3) | −0.001 (3) | 0.002 (3) |
| N1 | 0.055 (3) | 0.040 (3) | 0.053 (3) | 0.001 (2) | −0.007 (2) | 0.002 (2) |
| C3 | 0.076 (4) | 0.066 (5) | 0.068 (4) | 0.010 (3) | −0.018 (3) | 0.010 (3) |
| C7 | 0.071 (4) | 0.045 (4) | 0.066 (4) | 0.009 (3) | −0.011 (3) | −0.013 (3) |
| C2 | 0.050 (3) | 0.044 (3) | 0.055 (3) | 0.004 (3) | −0.001 (3) | 0.004 (3) |
| C13 | 0.087 (4) | 0.042 (3) | 0.069 (4) | 0.003 (3) | −0.027 (3) | 0.003 (3) |
| C10 | 0.059 (3) | 0.037 (3) | 0.066 (4) | 0.001 (3) | −0.013 (3) | −0.003 (3) |
| C1 | 0.064 (4) | 0.041 (4) | 0.062 (4) | 0.007 (3) | −0.013 (3) | 0.008 (3) |
| C5 | 0.086 (4) | 0.047 (4) | 0.066 (4) | 0.006 (3) | −0.014 (3) | −0.008 (3) |
| C11 | 0.058 (3) | 0.048 (4) | 0.058 (3) | 0.008 (3) | 0.000 (3) | −0.003 (3) |
| C8 | 0.068 (4) | 0.065 (4) | 0.070 (4) | 0.015 (3) | 0.008 (3) | 0.009 (3) |
| C4 | 0.088 (5) | 0.065 (4) | 0.066 (4) | −0.001 (4) | −0.029 (3) | −0.004 (3) |
| C9 | 0.068 (4) | 0.056 (4) | 0.072 (4) | 0.015 (3) | 0.006 (3) | 0.012 (3) |
| C14 | 0.078 (4) | 0.033 (3) | 0.081 (4) | −0.004 (3) | −0.027 (3) | 0.005 (3) |
| O1W | 0.074 (3) | 0.070 (3) | 0.147 (4) | −0.008 (2) | −0.002 (3) | 0.047 (3) |
| O2W | 0.116 (4) | 0.098 (4) | 0.136 (5) | −0.009 (3) | −0.017 (3) | 0.034 (4) |
| O3W | 0.115 (4) | 0.075 (4) | 0.233 (7) | −0.015 (3) | −0.046 (4) | 0.024 (4) |
| O4—C1 | 1.232 (7) | C12—C10 | 1.361 (7) |
| N3—C19 | 1.332 (6) | C12—C11 | 1.384 (7) |
| N3—C18 | 1.348 (6) | C12—H12 | 0.9300 |
| N3—Co1i | 2.000 (4) | N1—C2 | 1.358 (6) |
| C19—C20 | 1.378 (7) | C3—C2 | 1.370 (7) |
| C19—H19 | 0.9300 | C3—C4 | 1.377 (8) |
| C20—C16 | 1.379 (7) | C3—H3 | 0.9300 |
| C20—H20 | 0.9300 | C2—C1 | 1.518 (7) |
| C18—C17 | 1.378 (7) | C13—C10 | 1.524 (7) |
| C18—H18 | 0.9300 | C13—C14 | 1.545 (7) |
| C17—C16 | 1.381 (7) | C13—H13A | 0.9700 |
| C17—H17 | 0.9300 | C13—H13B | 0.9700 |
| C16—C15 | 1.519 (7) | C10—C9 | 1.371 (7) |
| C15—C14 | 1.492 (7) | C5—C4 | 1.368 (8) |
| C15—H15A | 0.9700 | C5—H5 | 0.9300 |
| C15—H15B | 0.9700 | C11—H11 | 0.9300 |
| Co1—O1 | 1.927 (4) | C8—C9 | 1.354 (7) |
| Co1—O5 | 1.932 (3) | C8—H8 | 0.9300 |
| Co1—N2 | 1.994 (4) | C4—H4 | 0.9300 |
| Co1—N3ii | 2.000 (4) | C9—H9 | 0.9300 |
| Co1—O1W | 2.184 (4) | C14—H14A | 0.9700 |
| O5—N1 | 1.344 (5) | C14—H14B | 0.9700 |
| N2—C11 | 1.334 (6) | O1W—H1W | 0.8200 |
| N2—C8 | 1.339 (6) | O1W—H2W | 0.8200 |
| O2—C7 | 1.224 (6) | O2W—H3W | 0.8400 |
| O1—C7 | 1.259 (6) | O2W—H4W | 0.8400 |
| O3—C1 | 1.248 (7) | O3W—H6W | 0.8200 |
| C6—C5 | 1.361 (7) | O3W—H5W | 0.8400 |
| C6—N1 | 1.363 (6) | O3W—H6W | 0.8200 |
| C6—C7 | 1.522 (7) | ||
| C19—N3—C18 | 116.1 (5) | C2—C3—C4 | 120.5 (6) |
| C19—N3—Co1i | 119.9 (4) | C2—C3—H3 | 119.7 |
| C18—N3—Co1i | 123.9 (4) | C4—C3—H3 | 119.7 |
| N3—C19—C20 | 123.9 (5) | O2—C7—O1 | 124.8 (6) |
| N3—C19—H19 | 118.0 | O2—C7—C6 | 115.0 (5) |
| C20—C19—H19 | 118.0 | O1—C7—C6 | 120.2 (5) |
| C16—C20—C19 | 120.1 (5) | N1—C2—C3 | 119.4 (5) |
| C16—C20—H20 | 119.9 | N1—C2—C1 | 116.9 (4) |
| C19—C20—H20 | 119.9 | C3—C2—C1 | 123.7 (5) |
| N3—C18—C17 | 122.9 (5) | C10—C13—C14 | 111.6 (4) |
| N3—C18—H18 | 118.5 | C10—C13—H13A | 109.3 |
| C17—C18—H18 | 118.5 | C14—C13—H13A | 109.3 |
| C18—C17—C16 | 120.6 (5) | C10—C13—H13B | 109.3 |
| C18—C17—H17 | 119.7 | C14—C13—H13B | 109.3 |
| C16—C17—H17 | 119.7 | H13A—C13—H13B | 108.0 |
| C20—C16—C17 | 116.3 (5) | C12—C10—C9 | 116.8 (5) |
| C20—C16—C15 | 121.0 (5) | C12—C10—C13 | 121.4 (5) |
| C17—C16—C15 | 122.7 (5) | C9—C10—C13 | 121.8 (5) |
| C14—C15—C16 | 115.6 (5) | O4—C1—O3 | 127.6 (6) |
| C14—C15—H15A | 108 | O4—C1—C2 | 117.4 (6) |
| C16—C15—H15A | 108 | O3—C1—C2 | 114.9 (5) |
| C14—C15—H15B | 108 | C6—C5—C4 | 122.7 (6) |
| C16—C15—H15B | 108 | C6—C5—H5 | 118.7 |
| H15A—C15—H15B | 107 | C4—C5—H5 | 118.7 |
| O1—Co1—O5 | 89.67 (16) | N2—C11—C12 | 121.5 (5) |
| O1—Co1—N2 | 86.43 (16) | N2—C11—H11 | 119.3 |
| O5—Co1—N2 | 164.02 (17) | C12—C11—H11 | 119.3 |
| O1—Co1—N3ii | 166.97 (19) | N2—C8—C9 | 123.4 (6) |
| O5—Co1—N3ii | 86.08 (16) | N2—C8—H8 | 118.3 |
| N2—Co1—N3ii | 94.30 (16) | C9—C8—H8 | 118.3 |
| O1—Co1—O1W | 99.39 (19) | C5—C4—C3 | 117.8 (5) |
| O5—Co1—O1W | 94.32 (16) | C5—C4—H4 | 121.1 |
| N2—Co1—O1W | 101.61 (17) | C3—C4—H4 | 121.1 |
| N3ii—Co1—O1W | 93.21 (18) | C8—C9—C10 | 120.2 (6) |
| N1—O5—Co1 | 124.5 (3) | C8—C9—H9 | 119.9 |
| C11—N2—C8 | 117.0 (5) | C10—C9—H9 | 119.9 |
| C11—N2—Co1 | 122.3 (4) | C15—C14—C13 | 113.6 (5) |
| C8—N2—Co1 | 120.1 (4) | C15—C14—H14A | 108.9 |
| C7—O1—Co1 | 131.5 (4) | C13—C14—H14A | 108.9 |
| C5—C6—N1 | 117.8 (5) | C15—C14—H14B | 108.9 |
| C5—C6—C7 | 119.1 (5) | C13—C14—H14B | 108.9 |
| N1—C6—C7 | 123.0 (4) | H14A—C14—H14B | 107.7 |
| C10—C12—C11 | 121.0 (5) | Co1—O1W—H1W | 118.8 |
| C10—C12—H12 | 119.5 | Co1—O1W—H2W | 105.7 |
| C11—C12—H12 | 119.5 | H1W—O1W—H2W | 110 |
| O5—N1—C2 | 114.7 (4) | H3W—O2W—H4W | 107 |
| O5—N1—C6 | 123.5 (4) | H5W—O3W—H6W | 112 |
| C2—N1—C6 | 121.7 (4) |
| H··· | ||||
| O1W—H1W···O3iii | 0.82 | 1.83 | 2.635 (5) | 165 |
| O1W—H2W···O2W | 0.82 | 1.99 | 2.732 (6) | 150 |
| O2W—H3W···O3Wiv | 0.84 | 2.55 | 3.018 (9) | 117 |
| O2W—H4W···O3 | 0.84 | 1.98 | 2.778 (6) | 157 |
| O3W—H5W···O2 | 0.84 | 2.01 | 2.828 (7) | 166 |
| O3W—H6W···O4i | 0.82 | 2.19 | 2.935 (7) | 150 |
| C3—H3···O4v | 0.93 | 2.46 | 3.364 (8) | 165 |
| C9—H9···O5vi | 0.93 | 2.46 | 3.366 (7) | 164 |
| C15—H15A···O2vii | 0.97 | 2.57 | 3.492 (7) | 159 |
| C18—H18···O3Wvi | 0.93 | 2.55 | 3.369 (7) | 149 |
Selected bond lengths (Å)
| Co1—O1 | 1.927 (4) |
| Co1—O5 | 1.932 (3) |
| Co1—N2 | 1.994 (4) |
| Co1—N3i | 2.000 (4) |
| Co1—O1 | 2.184 (4) |
Symmetry code: (i) .
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1 | 0.82 | 1.83 | 2.635 (5) | 165 |
| O1 | 0.82 | 1.99 | 2.732 (6) | 150 |
| O2 | 0.84 | 2.55 | 3.018 (9) | 117 |
| O2 | 0.84 | 1.98 | 2.778 (6) | 157 |
| O3 | 0.84 | 2.01 | 2.828 (7) | 166 |
| O3 | 0.82 | 2.19 | 2.935 (7) | 150 |
| C3—H3⋯O4v | 0.93 | 2.46 | 3.364 (8) | 165 |
| C9—H9⋯O5vi | 0.93 | 2.46 | 3.366 (7) | 164 |
| C15—H15 | 0.97 | 2.57 | 3.492 (7) | 159 |
| C18—H18⋯O3 | 0.93 | 2.55 | 3.369 (7) | 149 |
Symmetry codes: (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .