Literature DB >> 21580841

trans-Diaqua-bis(2,2'-bipyridine-κN,N')ruthenium(II) bis-(trifluoro-methane-sulfonate).

Hershel Jude, Peter S White, Dana M Dattelbaum, Reginaldo C Rocha.   

Abstract

The title compound, trans-[Ru(bpy)(2)(H(2)O)(2)](CF(3)SO(3))(2) (bpy = 2,2'-bipyridine, C(10)H(8)N(2)), crystallized from the decomposition of an aged aqueous solution of a dimeric complex of cis-Ru(bpy)(2) in 0.1 M triflic acid. The Ru(II) ion is located on a crystallographic inversion center and exhibits a distorted octa-hedral coordination with equivalent ligands trans to each other. The Ru-O distance is 2.1053 (16) Å and the Ru-N distances are 2.0727 (17) and 2.0739 (17) Å. The bpy ligands are bent, due to inter-ligand steric inter-actions between H atoms of opposite pyridyl units across the Ru center. The crystal structure exhibits an extensive hydrogen-bonding network involving the water ligands and the trifluoromethane-sulfonate counter-ions within two-dimensional layers, although no close hydrogen-bond inter-actions exist between different layers.

Entities:  

Year:  2008        PMID: 21580841      PMCID: PMC2959720          DOI: 10.1107/S1600536808028195

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of related compounds, see: Weathers et al. (1997 ▶); Durham et al. (1980 ▶); Klüfers & Zangl (2007 ▶). For a comparative discussion, see the Comment section in the Supplementary materials. For the preparation of the title compound, see: Jude et al. (2008 ▶); Sullivan et al. (1978 ▶). For related literature, see: Walsh & Durham (1982 ▶).

Experimental

Crystal data

[Ru(C10H8N2)2(H2O)2](CF3SO3)2 M = 747.61 Monoclinic, a = 8.6569 (5) Å b = 14.1272 (8) Å c = 11.3226 (6) Å β = 93.095 (3)° V = 1382.71 (13) Å3 Z = 2 Cu Kα radiation μ = 6.88 mm−1 T = 100 (2) K 0.20 × 0.15 × 0.02 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: numerical followed by SADABS (Bruker, 2007 ▶) T min = 0.340, T max = 0.875 15574 measured reflections 2538 independent reflections 2436 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.025 wR(F 2) = 0.061 S = 1.09 2538 reflections 204 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.69 e Å−3 Δρmin = −0.45 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808028195/pk2108sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808028195/pk2108Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ru(C10H8N2)2(H2O)2](CF3O3S)2F(000) = 748
Mr = 747.61Dx = 1.796 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ybcCell parameters from 1677 reflections
a = 8.6569 (5) Åθ = 5.0–67.3°
b = 14.1272 (8) ŵ = 6.88 mm1
c = 11.3226 (6) ÅT = 100 K
β = 93.095 (3)°Plate, brown
V = 1382.71 (13) Å30.20 × 0.15 × 0.02 mm
Z = 2
Bruker SMART APEXII CCD area-detector diffractometer2538 independent reflections
Radiation source: fine-focus sealed tube2436 reflections with I > 2σ(I)
graphiteRint = 0.039
φ and ω scansθmax = 69.7°, θmin = 5.0°
Absorption correction: numerical Numerical followed by SADABS (Bruker, 2007)h = −9→10
Tmin = 0.340, Tmax = 0.875k = −17→17
15574 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.025Hydrogen site location: difference Fourier map
wR(F2) = 0.062H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0273P)2 + 1.4103P] where P = (Fo2 + 2Fc2)/3
2538 reflections(Δ/σ)max < 0.001
204 parametersΔρmax = 0.69 e Å3
0 restraintsΔρmin = −0.45 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.Hydrogen atoms were placed in calculated positions with the exception of H1A and H1A, which were located in a difference synthesis and subsequently allowed to refine with isotropic thermal parameters.
xyzUiso*/Ueq
Ru10.50000.50000.00000.01303 (9)
O10.64907 (19)0.61137 (12)0.05421 (17)0.0181 (3)
N20.6089 (2)0.42131 (12)0.13474 (15)0.0154 (4)
C30.5507 (3)0.39407 (15)0.23786 (19)0.0192 (4)
H30.44310.40200.24750.023*
C40.6412 (3)0.35501 (17)0.3302 (2)0.0243 (5)
H40.59650.33650.40140.029*
C50.7986 (3)0.34355 (18)0.3164 (2)0.0271 (5)
H50.86440.32080.38000.033*
C60.8584 (3)0.36563 (17)0.2090 (2)0.0230 (5)
H60.96500.35590.19700.028*
C70.7606 (3)0.40225 (15)0.11871 (19)0.0179 (4)
C80.8048 (2)0.41339 (15)−0.00489 (19)0.0170 (4)
C90.9491 (3)0.38753 (16)−0.0439 (2)0.0208 (5)
H91.03120.37080.01130.025*
C100.9709 (3)0.38668 (17)−0.1642 (2)0.0240 (5)
H101.06920.3716−0.19260.029*
C110.8470 (3)0.40816 (17)−0.2426 (2)0.0230 (5)
H110.85780.4043−0.32550.028*
C120.7075 (3)0.43527 (16)−0.19861 (19)0.0194 (4)
H120.62330.4499−0.25280.023*
N130.6869 (2)0.44164 (12)−0.08110 (16)0.0160 (4)
S10.31188 (6)0.31728 (4)0.61491 (5)0.01857 (13)
C140.2290 (3)0.3937 (2)0.4986 (2)0.0343 (6)
F150.1904 (2)0.34309 (16)0.40134 (15)0.0556 (5)
F160.3298 (2)0.45966 (12)0.46821 (15)0.0458 (4)
F170.1035 (2)0.43667 (17)0.53333 (18)0.0652 (6)
O190.44116 (19)0.27407 (11)0.55926 (14)0.0241 (4)
O200.3551 (2)0.38361 (12)0.70808 (14)0.0271 (4)
O210.1893 (2)0.25354 (14)0.64049 (17)0.0360 (5)
H1A0.644 (3)0.6198 (19)0.120 (3)0.016 (7)*
H1B0.619 (4)0.651 (2)0.018 (3)0.033 (9)*
U11U22U33U12U13U23
Ru10.01032 (13)0.01596 (13)0.01305 (13)0.00058 (8)0.00289 (8)−0.00017 (7)
O10.0178 (8)0.0206 (8)0.0159 (9)−0.0017 (6)0.0017 (6)0.0007 (7)
N20.0146 (9)0.0163 (8)0.0155 (9)0.0011 (7)0.0015 (7)−0.0003 (7)
C30.0195 (11)0.0191 (10)0.0196 (11)0.0000 (8)0.0064 (9)−0.0007 (8)
C40.0310 (13)0.0241 (11)0.0185 (11)0.0024 (9)0.0070 (10)0.0042 (9)
C50.0291 (14)0.0300 (12)0.0219 (11)0.0101 (10)−0.0011 (10)0.0028 (9)
C60.0164 (11)0.0288 (12)0.0240 (11)0.0054 (9)0.0022 (9)0.0008 (9)
C70.0174 (11)0.0169 (10)0.0196 (11)0.0008 (8)0.0041 (9)−0.0011 (8)
C80.0149 (11)0.0164 (10)0.0198 (11)−0.0002 (8)0.0016 (9)−0.0010 (8)
C90.0163 (11)0.0228 (11)0.0232 (11)0.0020 (9)0.0018 (9)−0.0001 (9)
C100.0180 (12)0.0285 (12)0.0265 (12)0.0039 (9)0.0102 (10)0.0003 (9)
C110.0228 (12)0.0281 (12)0.0188 (11)0.0033 (9)0.0063 (9)−0.0001 (9)
C120.0192 (12)0.0227 (11)0.0167 (10)0.0016 (9)0.0027 (9)−0.0003 (8)
N130.0137 (9)0.0160 (8)0.0185 (9)−0.0004 (7)0.0037 (7)−0.0005 (7)
S10.0180 (3)0.0219 (3)0.0161 (2)−0.0016 (2)0.0032 (2)−0.00187 (19)
C140.0296 (15)0.0488 (17)0.0245 (13)0.0170 (12)−0.0003 (11)0.0023 (11)
F150.0536 (12)0.0841 (14)0.0270 (9)0.0107 (10)−0.0172 (8)−0.0078 (9)
F160.0665 (12)0.0385 (9)0.0332 (9)0.0124 (8)0.0110 (8)0.0147 (7)
F170.0458 (11)0.0919 (16)0.0583 (12)0.0474 (11)0.0068 (9)0.0086 (11)
O190.0218 (9)0.0244 (8)0.0266 (8)0.0029 (6)0.0054 (7)0.0001 (6)
O200.0347 (10)0.0275 (9)0.0191 (8)−0.0044 (7)0.0015 (7)−0.0040 (7)
O210.0340 (11)0.0391 (10)0.0366 (10)−0.0155 (8)0.0171 (8)−0.0102 (8)
Ru1—N2i2.0727 (17)C7—C81.479 (3)
Ru1—N22.0727 (17)C8—N131.360 (3)
Ru1—N13i2.0739 (17)C8—C91.396 (3)
Ru1—N132.0739 (17)C9—C101.385 (3)
Ru1—O1i2.1053 (16)C9—H90.9500
Ru1—O12.1053 (16)C10—C111.389 (4)
O1—H1A0.75 (3)C10—H100.9500
O1—H1B0.73 (4)C11—C121.384 (3)
N2—C31.352 (3)C11—H110.9500
N2—C71.363 (3)C12—N131.355 (3)
C3—C41.387 (3)C12—H120.9500
C3—H30.9500S1—O211.4334 (18)
C4—C51.389 (4)S1—O201.4451 (17)
C4—H40.9500S1—O191.4486 (16)
C5—C61.383 (3)S1—C141.820 (3)
C5—H50.9500C14—F171.323 (3)
C6—C71.391 (3)C14—F161.334 (3)
C6—H60.9500C14—F151.340 (3)
N2i—Ru1—N2180.00 (8)N2—C7—C6121.9 (2)
N2i—Ru1—N13i77.18 (7)N2—C7—C8113.93 (19)
N2—Ru1—N13i102.82 (7)C6—C7—C8123.8 (2)
N2i—Ru1—N13102.82 (7)N13—C8—C9122.0 (2)
N2—Ru1—N1377.18 (7)N13—C8—C7114.07 (18)
N13i—Ru1—N13180.0C9—C8—C7123.6 (2)
N2i—Ru1—O1i86.51 (7)C10—C9—C8119.0 (2)
N2—Ru1—O1i93.49 (7)C10—C9—H9120.5
N13i—Ru1—O1i86.88 (7)C8—C9—H9120.5
N13—Ru1—O1i93.12 (7)C9—C10—C11119.0 (2)
N2i—Ru1—O193.49 (7)C9—C10—H10120.5
N2—Ru1—O186.51 (7)C11—C10—H10120.5
N13i—Ru1—O193.12 (7)C12—C11—C10119.3 (2)
N13—Ru1—O186.88 (7)C12—C11—H11120.4
O1i—Ru1—O1180.0C10—C11—H11120.4
Ru1—O1—H1A110 (2)N13—C12—C11122.4 (2)
Ru1—O1—H1B102 (3)N13—C12—H12118.8
H1A—O1—H1B113 (3)C11—C12—H12118.8
C3—N2—C7117.74 (19)C12—N13—C8117.98 (18)
C3—N2—Ru1127.77 (15)C12—N13—Ru1127.48 (15)
C7—N2—Ru1114.28 (14)C8—N13—Ru1114.35 (14)
N2—C3—C4122.9 (2)O21—S1—O20115.16 (10)
N2—C3—H3118.6O21—S1—O19114.90 (11)
C4—C3—H3118.6O20—S1—O19114.53 (10)
C3—C4—C5118.6 (2)O21—S1—C14104.58 (13)
C3—C4—H4120.7O20—S1—C14102.69 (12)
C5—C4—H4120.7O19—S1—C14102.65 (11)
C6—C5—C4119.2 (2)F17—C14—F16108.4 (2)
C6—C5—H5120.4F17—C14—F15108.5 (2)
C4—C5—H5120.4F16—C14—F15107.4 (2)
C5—C6—C7119.2 (2)F17—C14—S1110.79 (19)
C5—C6—H6120.4F16—C14—S1111.30 (19)
C7—C6—H6120.4F15—C14—S1110.4 (2)
N13i—Ru1—N2—C316.01 (19)C9—C10—C11—C123.8 (4)
N13—Ru1—N2—C3−163.99 (19)C10—C11—C12—N13−0.1 (4)
O1i—Ru1—N2—C3−71.58 (18)C11—C12—N13—C8−5.0 (3)
O1—Ru1—N2—C3108.42 (18)C11—C12—N13—Ru1169.81 (17)
N13i—Ru1—N2—C7−158.51 (14)C9—C8—N13—C126.5 (3)
N13—Ru1—N2—C721.49 (14)C7—C8—N13—C12−166.89 (19)
O1i—Ru1—N2—C7113.90 (15)C9—C8—N13—Ru1−169.01 (16)
O1—Ru1—N2—C7−66.10 (15)C7—C8—N13—Ru117.6 (2)
C7—N2—C3—C45.3 (3)N2i—Ru1—N13—C12−16.10 (19)
Ru1—N2—C3—C4−169.07 (17)N2—Ru1—N13—C12163.90 (19)
N2—C3—C4—C50.2 (4)O1i—Ru1—N13—C1271.02 (18)
C3—C4—C5—C6−4.1 (4)O1—Ru1—N13—C12−108.98 (18)
C4—C5—C6—C72.5 (4)N2i—Ru1—N13—C8158.85 (14)
C3—N2—C7—C6−7.0 (3)N2—Ru1—N13—C8−21.15 (14)
Ru1—N2—C7—C6168.14 (17)O1i—Ru1—N13—C8−114.03 (15)
C3—N2—C7—C8166.29 (18)O1—Ru1—N13—C865.97 (15)
Ru1—N2—C7—C8−18.6 (2)O21—S1—C14—F1757.2 (2)
C5—C6—C7—N23.2 (3)O20—S1—C14—F17−63.4 (2)
C5—C6—C7—C8−169.4 (2)O19—S1—C14—F17177.4 (2)
N2—C7—C8—N130.6 (3)O21—S1—C14—F16177.87 (17)
C6—C7—C8—N13173.7 (2)O20—S1—C14—F1657.3 (2)
N2—C7—C8—C9−172.6 (2)O19—S1—C14—F16−61.9 (2)
C6—C7—C8—C90.5 (3)O21—S1—C14—F15−63.0 (2)
N13—C8—C9—C10−2.8 (3)O20—S1—C14—F15176.41 (18)
C7—C8—C9—C10169.9 (2)O19—S1—C14—F1557.3 (2)
C8—C9—C10—C11−2.4 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1B···O19ii0.73 (4)2.01 (4)2.727 (2)169 (4)
O1—H1A···O20iii0.75 (3)1.95 (3)2.695 (2)169 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1B⋯O19i0.73 (4)2.01 (4)2.727 (2)169 (4)
O1—H1A⋯O20ii0.75 (3)1.95 (3)2.695 (2)169 (3)

Symmetry codes: (i) ; (ii) .

  3 in total

1.  trans-diaquabis(2,2'-bipyridine-N,N')-ruthenium(II) bis(hexafluorophosphate).

Authors:  N R Weathers; R C Sadoski; B Durham; A W Cordes
Journal:  Acta Crystallogr C       Date:  1997-08-15       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis, structure, and electronic properties of a dimer of Ru(bpy)2 doubly bridged by methoxide and pyrazolate.

Authors:  Hershel Jude; Francisca N Rein; Peter S White; Dana M Dattelbaum; Reginaldo C Rocha
Journal:  Inorg Chem       Date:  2008-07-25       Impact factor: 5.165

  3 in total

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