Literature DB >> 21580827

Potassium l-2-nitrimino-1,3-diazepane-4-carboxyl-ate monohydrate.

Harutyun A Karapetyan1.   

Abstract

The title compound, K(+)·C(6)H(9)N(4)O(4) (-)·H(2)O, crystallizes with the K atoms located on special positions related by pseudocentres of symmetry. Each K atom is coordinated by six O-atom donors. The N and water H atoms are involved in inter- and intra-molecular N-H⋯O, N-H⋯N and O-H⋯O hydrogen bonding. The data indicate inversion twinning.

Entities:  

Year:  2008        PMID: 21580827      PMCID: PMC2959513          DOI: 10.1107/S1600536808023817

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Apreyan & Petrosyan (2008 ▶); Apreyan et al. (2008a ▶,b ▶); Karapetyan (2008a ▶,b ▶); Karapetyan et al. (2007 ▶); Kurtz & Perry (1968 ▶); Paul et al. (1961 ▶); Petrosyan et al. (2005 ▶).

Experimental

Crystal data

K+·C6H9N4O4 −·H2O M = 258.29 Orthorhombic, a = 7.3883 (15) Å b = 10.087 (2) Å c = 29.031 (6) Å V = 2163.5 (8) Å3 Z = 8 Mo Kα radiation μ = 0.51 mm−1 T = 293 (2) K 0.21 × 0.14 × 0.11 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: none 5030 measured reflections 3141 independent reflections 1736 reflections with I > 2σ(I) R int = 0.030 3 standard reflections every 400 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.065 wR(F 2) = 0.193 S = 1.04 3141 reflections 154 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.42 e Å−3 Δρmin = −0.39 e Å−3 Absolute structure: Flack (1983 ▶), 1350 Friedel pairs Flack parameter: 0.48 (20) Data collection: DATCOL in CAD-4 Software (Enraf–Nonius, 1988 ▶); cell refinement: LS in CAD-4 Software; data reduction: HELENA (Spek, 1997 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808023817/hg2410sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808023817/hg2410Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
K+·C6H9N4O4·H2OF(000) = 1072
Mr = 258.29Dx = 1.586 Mg m3
Orthorhombic, I222Mo Kα radiation, λ = 0.71073 Å
Hall symbol: I 2 2Cell parameters from 24 reflections
a = 7.3883 (15) Åθ = 14–16°
b = 10.087 (2) ŵ = 0.51 mm1
c = 29.031 (6) ÅT = 293 K
V = 2163.5 (8) Å3Prism, yellow
Z = 80.21 × 0.14 × 0.11 mm
Enraf–Nonius CAD-4 diffractometerRint = 0.030
Radiation source: fine-focus sealed tubeθmax = 30.0°, θmin = 2.1°
graphiteh = −10→10
ω/2θ scansk = −13→13
5030 measured reflectionsl = −38→38
3141 independent reflections3 standard reflections every 400 reflections
1726 reflections with I > 2σ(I) intensity decay: none
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.065H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.193w = 1/[σ2(Fo2) + (0.0676P)2 + 6.1136P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
3141 reflectionsΔρmax = 0.43 e Å3
154 parametersΔρmin = −0.39 e Å3
3 restraintsAbsolute structure: Flack (1983), 1350 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.48 (20)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
K10.50000.50000.26313 (7)0.0481 (5)
K20.00000.50000.26268 (8)0.0536 (5)
O10.2429 (10)0.6833 (3)0.28276 (9)0.0510 (8)
O20.2513 (10)0.8993 (3)0.29658 (9)0.0618 (10)
O30.2476 (15)1.1286 (3)0.37039 (10)0.0905 (16)
O40.2389 (10)1.2557 (3)0.42935 (11)0.0723 (12)
O50.2461 (12)0.3267 (3)0.30317 (11)0.0644 (10)
N10.2755 (14)0.8784 (3)0.38382 (11)0.0630 (19)
H20.33730.93200.36700.076*
N20.2659 (10)0.8275 (3)0.46137 (11)0.0583 (14)
H90.32240.85260.48580.070*
N30.2516 (11)1.0441 (3)0.44244 (10)0.0490 (10)
N40.2478 (12)1.1416 (3)0.41290 (11)0.0526 (10)
C10.2419 (12)0.7820 (4)0.30906 (13)0.0433 (11)
C20.2101 (7)0.7544 (4)0.36059 (14)0.0397 (12)
H10.07940.74700.36570.048*
C30.294 (2)0.6381 (6)0.37834 (19)0.118 (5)
H40.42400.65140.37930.142*
H30.26970.56450.35780.142*
C40.2262 (15)0.6022 (4)0.42740 (17)0.069 (2)
H50.11500.55260.42320.082*
H60.31390.54040.43990.082*
C50.1931 (9)0.6894 (5)0.46054 (17)0.0601 (19)
H70.23190.64810.48910.072*
H80.06240.69740.46240.072*
C60.2498 (15)0.9152 (4)0.42687 (13)0.0475 (10)
H100.288 (8)0.279 (5)0.3251 (13)0.07 (2)*
H110.288 (14)0.287 (8)0.2790 (13)0.16 (5)*
U11U22U33U12U13U23
K10.0547 (12)0.0388 (11)0.0507 (11)0.0026 (10)0.0000.000
K20.0566 (12)0.0404 (12)0.0637 (13)−0.0021 (11)0.0000.000
O10.070 (2)0.0423 (15)0.0409 (14)0.000 (3)0.008 (3)−0.0129 (13)
O20.115 (3)0.0374 (15)0.0326 (13)0.013 (4)−0.002 (4)0.0002 (11)
O30.202 (5)0.0350 (16)0.0343 (15)−0.001 (5)−0.009 (5)0.0075 (12)
O40.136 (4)0.0279 (13)0.0534 (18)0.006 (4)−0.007 (4)−0.0024 (13)
O50.103 (3)0.0470 (17)0.0436 (17)−0.009 (4)−0.003 (4)0.0143 (15)
N10.134 (6)0.0286 (16)0.0266 (16)−0.021 (4)0.012 (3)−0.0014 (12)
N20.115 (4)0.0309 (16)0.0291 (15)−0.017 (3)0.012 (4)−0.0006 (13)
N30.087 (3)0.0286 (14)0.0312 (15)0.007 (4)0.006 (4)0.0001 (12)
N40.088 (3)0.0310 (16)0.0393 (17)0.005 (4)0.014 (4)0.0017 (13)
C10.057 (3)0.039 (2)0.0339 (18)0.007 (4)−0.010 (3)−0.0022 (15)
C20.049 (3)0.0352 (19)0.0344 (19)0.004 (2)−0.002 (2)−0.0046 (16)
C30.267 (17)0.043 (3)0.043 (3)0.046 (7)−0.002 (6)0.008 (2)
C40.125 (6)0.029 (2)0.052 (2)−0.013 (4)−0.008 (5)0.0091 (18)
C50.098 (6)0.037 (2)0.045 (3)0.001 (3)0.004 (3)0.011 (2)
C60.079 (3)0.0335 (17)0.0298 (17)−0.002 (5)0.001 (5)−0.0016 (14)
K1—O12.712 (5)O4—N41.247 (4)
K1—O1i2.712 (5)O5—H100.856 (19)
K1—O2ii2.736 (6)O5—H110.87 (2)
K1—O2iii2.736 (6)N1—C61.318 (5)
K1—O5i2.815 (7)N1—C21.502 (6)
K1—O52.815 (7)N1—H20.8600
K1—C1ii3.524 (5)N2—C61.342 (5)
K1—C1iii3.524 (5)N2—C51.494 (7)
K1—K23.6942 (8)N2—H90.8600
K1—K2iv3.6942 (8)N3—N41.305 (4)
K1—H112.70 (11)N3—C61.377 (5)
K2—O12.642 (5)C1—C21.540 (6)
K2—O1v2.642 (5)C1—K1viii3.524 (5)
K2—O2vi2.714 (6)C2—C31.423 (9)
K2—O2ii2.714 (6)C2—H10.9800
K2—O52.783 (6)C3—C41.552 (9)
K2—O5v2.783 (6)C3—H40.9700
K2—K1vii3.6942 (8)C3—H30.9700
K2—H113.06 (6)C4—C51.326 (7)
O1—C11.255 (4)C4—H50.9700
O2—C11.239 (5)C4—H60.9700
O2—K2viii2.714 (6)C5—H70.9700
O2—K1viii2.736 (6)C5—H80.9700
O3—N41.241 (4)
O1—K1—O1i155.74 (15)O2ii—K2—K1vii132.78 (15)
O1—K1—O2ii84.89 (16)O5—K2—K1vii130.69 (16)
O1i—K1—O2ii110.81 (14)O5v—K2—K1vii49.08 (15)
O1—K1—O2iii110.81 (14)O1—K2—K147.16 (12)
O1i—K1—O2iii84.89 (16)O1v—K2—K1132.72 (12)
O2ii—K1—O2iii101.4 (2)O2vi—K2—K1132.78 (15)
O1—K1—O5i87.51 (15)O2ii—K2—K147.57 (13)
O1i—K1—O5i82.52 (14)O5—K2—K149.08 (15)
O2ii—K1—O5i160.81 (11)O5v—K2—K1130.69 (16)
O2iii—K1—O5i65.09 (14)K1vii—K2—K1179.60 (13)
O1—K1—O582.52 (14)O1—K2—H1189 (2)
O1i—K1—O587.51 (15)O1v—K2—H1187 (2)
O2ii—K1—O565.09 (14)O2vi—K2—H11146.2 (10)
O2iii—K1—O5160.81 (11)O2ii—K2—H1150.6 (8)
O5i—K1—O5131.23 (19)O5—K2—H1116.1 (6)
O1—K1—C1ii101.25 (17)O5v—K2—H11146.1 (6)
O1i—K1—C1ii93.15 (14)K1vii—K2—H11134 (2)
O2ii—K1—C1ii17.69 (15)K1—K2—H1146 (2)
O2iii—K1—C1ii101.48 (14)C1—O1—K2133.3 (6)
O5i—K1—C1ii166.12 (17)C1—O1—K1132.3 (5)
O5—K1—C1ii61.33 (12)K2—O1—K187.26 (8)
O1—K1—C1iii93.15 (14)C1—O2—K2viii125.5 (5)
O1i—K1—C1iii101.25 (17)C1—O2—K1viii120.1 (6)
O2ii—K1—C1iii101.48 (14)K2viii—O2—K1viii85.34 (8)
O2iii—K1—C1iii17.69 (15)K2—O5—K182.59 (8)
O5i—K1—C1iii61.33 (12)K2—O5—H10155 (4)
O5—K1—C1iii166.12 (17)K1—O5—H10114 (5)
C1ii—K1—C1iii107.02 (17)K2—O5—H11101 (5)
O1—K1—K245.59 (12)K1—O5—H1174 (7)
O1i—K1—K2134.53 (12)H10—O5—H11102 (3)
O2ii—K1—K247.09 (13)C6—N1—C2127.9 (6)
O2iii—K1—K2132.56 (15)C6—N1—H2116.0
O5i—K1—K2131.90 (15)C2—N1—H2116.0
O5—K1—K248.33 (15)C6—N2—C5124.8 (5)
C1ii—K1—K259.38 (14)C6—N2—H9117.6
C1iii—K1—K2120.34 (15)C5—N2—H9117.6
O1—K1—K2iv134.53 (12)N4—N3—C6119.7 (3)
O1i—K1—K2iv45.59 (12)O3—N4—O4118.6 (3)
O2ii—K1—K2iv132.56 (15)O3—N4—N3125.0 (3)
O2iii—K1—K2iv47.09 (13)O4—N4—N3116.4 (3)
O5i—K1—K2iv48.33 (15)O2—C1—O1125.4 (4)
O5—K1—K2iv131.90 (15)O2—C1—C2117.8 (3)
C1ii—K1—K2iv120.34 (15)O1—C1—C2116.6 (4)
C1iii—K1—K2iv59.38 (14)O2—C1—K1viii42.2 (4)
K2—K1—K2iv179.60 (13)O1—C1—K1viii97.8 (3)
O1—K1—H1195.8 (12)C2—C1—K1viii127.8 (4)
O1i—K1—H1180.1 (15)C3—C2—N1112.6 (5)
O2ii—K1—H1154.4 (13)C3—C2—C1115.8 (5)
O2iii—K1—H11142.9 (4)N1—C2—C1103.6 (4)
O5i—K1—H11144.2 (12)C3—C2—H1108.2
O5—K1—H1117.9 (4)N1—C2—H1108.2
C1ii—K1—H1146.4 (10)C1—C2—H1108.2
C1iii—K1—H11153.2 (8)C2—C3—C4112.6 (8)
K2—K1—H1154.5 (15)C2—C3—H4109.1
K2iv—K1—H11125.5 (15)C4—C3—H4109.1
O1—K2—O1v154.51 (16)C2—C3—H3109.1
O1—K2—O2vi109.73 (14)C4—C3—H3109.1
O1v—K2—O2vi86.68 (16)H4—C3—H3107.8
O1—K2—O2ii86.68 (16)C5—C4—C3124.8 (4)
O1v—K2—O2ii109.73 (14)C5—C4—H5106.1
O2vi—K2—O2ii101.3 (2)C3—C4—H5106.1
O1—K2—O584.41 (15)C5—C4—H6106.1
O1v—K2—O584.89 (16)C3—C4—H6106.1
O2vi—K2—O5160.93 (12)H5—C4—H6106.3
O2ii—K2—O565.81 (15)C4—C5—N2124.3 (5)
O1—K2—O5v84.89 (16)C4—C5—H7106.3
O1v—K2—O5v84.41 (15)N2—C5—H7106.3
O2vi—K2—O5v65.81 (15)C4—C5—H8106.3
O2ii—K2—O5v160.93 (12)N2—C5—H8106.3
O5—K2—O5v130.0 (2)H7—C5—H8106.4
O1—K2—K1vii132.72 (12)N1—C6—N2120.6 (4)
O1v—K2—K1vii47.16 (12)N1—C6—N3125.2 (4)
O2vi—K2—K1vii47.57 (13)N2—C6—N3112.1 (3)
O1v—K2—O1—C1−49.9 (4)O2ii—K1—O5—K2−53.73 (14)
O2vi—K2—O1—C177.6 (4)O2iii—K1—O5—K2−101.4 (5)
O2ii—K2—O1—C1178.5 (4)O5i—K1—O5—K2114.12 (11)
O5—K2—O1—C1−115.5 (4)C1ii—K1—O5—K2−73.12 (16)
O5v—K2—O1—C115.6 (4)C1iii—K1—O5—K2−38.4 (6)
K1vii—K2—O1—C127.7 (5)K2iv—K1—O5—K2−179.55 (14)
K1—K2—O1—C1−151.7 (4)C6—N3—N4—O3−2.1 (16)
O1v—K2—O1—K1101.82 (8)C6—N3—N4—O4175.9 (10)
O2vi—K2—O1—K1−130.65 (16)K2viii—O2—C1—O1−49.8 (12)
O2ii—K2—O1—K1−29.78 (10)K1viii—O2—C1—O157.6 (12)
O5—K2—O1—K136.21 (12)K2viii—O2—C1—C2135.8 (5)
O5v—K2—O1—K1167.33 (12)K1viii—O2—C1—C2−116.8 (5)
K1vii—K2—O1—K1179.47 (16)K2viii—O2—C1—K1viii−107.4 (3)
O1i—K1—O1—C149.8 (4)K2—O1—C1—O2−114.3 (9)
O2ii—K1—O1—C1−178.2 (4)K1—O1—C1—O2105.4 (9)
O2iii—K1—O1—C1−77.9 (4)K2—O1—C1—C260.2 (8)
O5i—K1—O1—C1−15.8 (4)K1—O1—C1—C2−80.1 (8)
O5—K1—O1—C1116.3 (4)K2—O1—C1—K1viii−79.4 (3)
C1ii—K1—O1—C1175.0 (4)K1—O1—C1—K1viii140.3 (2)
C1iii—K1—O1—C1−76.9 (5)C6—N1—C2—C3−67.0 (11)
K2—K1—O1—C1152.2 (4)C6—N1—C2—C1167.2 (9)
K2iv—K1—O1—C1−28.3 (5)O2—C1—C2—C3−146.7 (9)
O1i—K1—O1—K2−102.45 (8)O1—C1—C2—C338.4 (11)
O2ii—K1—O1—K229.60 (10)K1viii—C1—C2—C3164.0 (6)
O2iii—K1—O1—K2129.84 (15)O2—C1—C2—N1−22.9 (10)
O5i—K1—O1—K2−168.04 (12)O1—C1—C2—N1162.2 (8)
O5—K1—O1—K2−35.89 (12)K1viii—C1—C2—N1−72.2 (6)
C1ii—K1—O1—K222.82 (11)N1—C2—C3—C472.2 (10)
C1iii—K1—O1—K2130.87 (14)C1—C2—C3—C4−168.9 (7)
K2iv—K1—O1—K2179.46 (17)C2—C3—C4—C5−39.8 (16)
O1—K2—O5—K1−34.97 (11)C3—C4—C5—N2−19.3 (15)
O1v—K2—O5—K1168.20 (12)C6—N2—C5—C452.9 (12)
O2vi—K2—O5—K1104.1 (5)C2—N1—C6—N242.7 (16)
O2ii—K2—O5—K153.89 (13)C2—N1—C6—N3−154.9 (9)
O5v—K2—O5—K1−113.49 (10)C5—N2—C6—N1−43.0 (15)
K1vii—K2—O5—K1−179.56 (14)C5—N2—C6—N3152.5 (8)
O1—K1—O5—K234.09 (11)N4—N3—C6—N112.3 (17)
O1i—K1—O5—K2−168.08 (12)N4—N3—C6—N2176.0 (9)
D—H···AD—HH···AD···AD—H···A
O5—H11···O1ii0.87 (2)2.09 (5)2.885 (5)153 (10)
O5—H10···O3ix0.86 (2)2.03 (4)2.793 (4)148 (6)
N2—H9···N3x0.862.393.080 (4)138
N1—H2···O30.862.092.561 (5)114
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H11⋯O1i0.87 (2)2.09 (5)2.885 (5)153 (10)
O5—H10⋯O3ii0.856 (19)2.03 (4)2.793 (4)148 (6)
N2—H9⋯N3iii0.862.393.080 (4)138
N1—H2⋯O30.862.092.561 (5)114

Symmetry codes: (i) ; (ii) ; (iii) .

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