Literature DB >> 21580760

Ethyl 1-benzyl-4-hydr-oxy-2-methyl-5-oxopyrrolidine-3-carboxyl-ate.

Graeme J Gainsford1, Jennifer M Mason.   

Abstract

In the title oxopyrrolidine, C(15)H(19)NO(4), the five-membered pyrrolidine ring is in a twist conformation and its mean plane makes an angle of 89.2 (3)° with the phenyl ring. In the crystal, mol-ecules pack as dimers via strong O-H⋯O [R(2) (2)(10)] inter-actions cross-linked by weaker C-H⋯O and C-H⋯π inter-actions. Full synthetic and spectroscopic details are given for the title compound and related dicarboxyl-ates.

Entities:  

Year:  2010        PMID: 21580760      PMCID: PMC2983917          DOI: 10.1107/S1600536810010834

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of a programme to elucidate the structure–activity relationships of the Immucillin family of potent purine nucleoside phospho­rylase inhibitors, see: Mason et al. (2007 ▶); Edwards et al. (2009 ▶); Clinch et al. (2009 ▶). For a related structure, see: Snider et al. (2000 ▶). For ring conformations see: Cremer & Pople (1975 ▶) and for hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C15H19NO4 M = 277.31 Orthorhombic, a = 27.746 (12) Å b = 14.035 (5) Å c = 7.357 (3) Å V = 2865 (2) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 93 K 0.45 × 0.14 × 0.01 mm

Data collection

Siemens SMART APEX CCD area-detector diffractometer 9428 measured reflections 2376 independent reflections 531 reflections with I > 2σ(I) R int = 0.136

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.138 S = 1.10 2376 reflections 146 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP in WinGX (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810010834/sj2755sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810010834/sj2755Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H19NO4F(000) = 1184
Mr = 277.31Dx = 1.286 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 708 reflections
a = 27.746 (12) Åθ = 2.9–17.8°
b = 14.035 (5) ŵ = 0.09 mm1
c = 7.357 (3) ÅT = 93 K
V = 2865 (2) Å3Plate, colourless
Z = 80.45 × 0.14 × 0.01 mm
Bruker APEXII CCD area-detector diffractometer531 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.136
graphiteθmax = 25.0°, θmin = 2.9°
Detector resolution: 8.333 pixels mm-1h = −32→32
φ and ω scansk = −16→16
9428 measured reflectionsl = −7→7
2376 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.138H atoms treated by a mixture of independent and constrained refinement
S = 1.10 [exp(7.00(sinθ/λ)2)]/[σ2(Fo2) + (0.010P)2], where P = 0.33333Fo2 + 0.66667Fc2
2376 reflections(Δ/σ)max < 0.001
146 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.21 e Å3
Experimental. (I)(2S*,3S*,4R*)-Ethyl-1-benzyl-4-hydroxy-2-methyl -5-oxopyrrolidine-3-carboxylate (I) 1H NMR (300 MHz, CDCl3, TMS) δ 7.35-7.20 (m, 5H), 4.97 (d, J = 15.1 Hz, 1H), 4.64 (d, J = 8.7 Hz, 1H), 4.18 (q, J = 7.1 Hz, 2H), 4.07 (d, J = 15.1 Hz, 1H),3.83 (bs, 1H), 3.56 (m, 1H), 2.71 (t, J = 8.7 Hz, 1H), 1.33-1.06 (m, 6H). 13C NMR (CDCl3, 75.5 MHz, centre line of solvent 77.4 ppm) 173.2, 171.6, 136.0, 129.2, 128.3, 128.2, 72.5, 61.9, 54.7, 52.6, 44.6, 19.4, 14.5.(II) (3S*,4S*,5R*)-Diethyl 2-benzyl-3-methylisoxazolidine-4,5-dicarboxylate 1H NMR (300 MHz, CDCl3, TMS) δ 7.39-7.12 (m, 5H), 4.58 (d, J = 8.4 Hz, 1H), 4.17-3.96 (m, 6H), 3.26 (m, 2H), 1.18 (m, 9H). 13C NMR (CDCl3, 75.5 MHz, centre line of solvent 77.4 ppm) 169.2, 169.0, 137.0, 128.7, 128.1, 127.1, 75.8, 63.8, 60.8, 60.2, 57.4, 16.2, 13.6.(III) (3R*,4S*,5R*)-Diethyl 2-benzyl-3-methylisoxazolidine-4,5-dicarboxylate 1H NMR (300 MHz, CDCl3, TMS) δ 7.52-7.21 (m, 5H), 4.74 (d, J = 9.2 Hz, 1H), 4.32-4.05 (m, 5H), 3.95 (d, J = 14.3 Hz, 1H), 3.85 (dd, J = 7.6, 9.1 Hz, 1H), 3.30 (m, 1H), 1.86-1.11 (m, 9H). 13C NMR (CDCl3, 75.5 MHz, centre line of solvent 77.4 ppm) 170.1, 169.5, 136.7, 129.3. 128.6, 127.7, 76.2, 62.6, 61.6, 61.4, 59.6, 55.1, 14.6, 14.4.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.58333 (18)0.5432 (2)0.5104 (6)0.0312 (13)
O20.4974 (2)0.5137 (3)0.2899 (6)0.0249 (12)
H2O0.470 (2)0.490 (4)0.347 (7)0.030*
O30.55079 (18)0.2657 (3)−0.0461 (7)0.0352 (14)
O40.48229 (16)0.3345 (3)0.0499 (6)0.0229 (11)*
N10.6190 (2)0.4824 (3)0.2531 (7)0.0215 (14)
C10.6322 (3)0.4387 (4)−0.0757 (8)0.036 (2)
H1A0.66720.4340−0.06020.053*
H1B0.62370.5038−0.11190.053*
H1C0.62180.3939−0.17000.053*
C20.6070 (2)0.4141 (4)0.1053 (9)0.0195 (16)*
H20.61660.34840.14360.023*
C30.5537 (2)0.4208 (4)0.0992 (9)0.0234 (17)*
H30.54560.47440.01510.028*
C40.5375 (2)0.4506 (4)0.2884 (8)0.0203 (17)
H40.52950.39250.36120.024*
C50.5818 (3)0.4975 (4)0.3670 (9)0.0216 (15)*
C60.5296 (2)0.3317 (4)0.0232 (9)0.0210 (16)*
C70.4550 (2)0.2497 (4)−0.0061 (11)0.0313 (19)
H7A0.46250.19520.07440.038*
H7B0.46320.2319−0.13260.038*
C80.4022 (2)0.2757 (4)0.0083 (11)0.034 (2)
H8A0.39500.3279−0.07600.051*
H8B0.39500.29600.13290.051*
H8C0.38250.2202−0.02250.051*
C90.6675 (2)0.5142 (4)0.2908 (9)0.0278 (19)
H9A0.66640.55960.39380.033*
H9B0.67970.54930.18350.033*
C100.7025 (2)0.4361 (4)0.3362 (9)0.0204 (16)*
C110.7490 (3)0.4379 (4)0.2743 (9)0.0260 (16)*
H110.75830.48890.19690.031*
C120.7833 (3)0.3696 (4)0.3179 (8)0.0238 (17)*
H120.81550.37330.27470.029*
C130.7674 (3)0.2941 (4)0.4305 (10)0.033 (2)
H130.78970.24580.46410.039*
C140.7214 (3)0.2886 (4)0.4920 (11)0.031 (2)
H140.71160.23620.56470.037*
C150.6886 (3)0.3600 (4)0.4480 (8)0.0318 (19)
H150.65660.35720.49410.038*
U11U22U33U12U13U23
O10.057 (4)0.0099 (18)0.026 (3)0.003 (2)−0.001 (3)−0.002 (2)
O20.042 (3)0.0100 (19)0.023 (3)0.002 (2)0.006 (3)0.0030 (19)
O30.044 (3)0.012 (2)0.050 (3)0.002 (2)0.006 (3)−0.012 (2)
N10.033 (4)0.014 (2)0.017 (3)−0.002 (2)0.002 (3)−0.006 (2)
C10.049 (6)0.026 (3)0.032 (4)−0.005 (4)−0.003 (5)0.001 (4)
C40.032 (5)0.014 (3)0.014 (4)0.000 (3)0.002 (4)0.002 (3)
C70.039 (5)0.010 (2)0.046 (5)−0.001 (3)−0.007 (5)0.009 (3)
C80.041 (5)0.016 (3)0.046 (5)−0.006 (3)−0.002 (5)−0.004 (4)
C90.035 (5)0.013 (3)0.035 (5)−0.006 (3)0.001 (4)−0.004 (3)
C130.044 (5)0.014 (3)0.039 (5)0.006 (3)−0.005 (5)−0.010 (3)
C140.036 (5)0.021 (3)0.036 (5)−0.003 (3)−0.001 (5)0.012 (4)
C150.047 (5)0.021 (3)0.028 (4)−0.012 (3)0.000 (5)−0.008 (3)
O1—C51.236 (7)C7—C81.512 (8)
O2—C41.421 (7)C7—H7A0.9900
O2—H2O0.94 (6)C7—H7B0.9900
O3—C61.211 (7)C8—H8A0.9800
O4—C61.328 (7)C8—H8B0.9800
O4—C71.471 (6)C8—H8C0.9800
N1—C51.346 (8)C9—C101.504 (8)
N1—C91.442 (8)C9—H9A0.9900
N1—C21.488 (7)C9—H9B0.9900
C1—C21.543 (8)C10—C111.367 (9)
C1—H1A0.9800C10—C151.402 (8)
C1—H1B0.9800C11—C121.389 (8)
C1—H1C0.9800C11—H110.9500
C5—C41.511 (8)C12—C131.414 (8)
C4—C31.522 (8)C12—H120.9500
C4—H41.0000C13—C141.357 (9)
C3—C21.484 (9)C13—H130.9500
C3—C61.523 (8)C14—C151.392 (9)
C3—H31.0000C14—H140.9500
C2—H21.0000C15—H150.9500
C4—O2—H2O115 (4)O4—C7—H7A110.4
C6—O4—C7116.4 (5)C8—C7—H7A110.4
C5—N1—C9123.1 (6)O4—C7—H7B110.4
C5—N1—C2112.6 (5)C8—C7—H7B110.4
C9—N1—C2123.3 (5)H7A—C7—H7B108.6
C2—C1—H1A109.5C7—C8—H8A109.5
C2—C1—H1B109.5C7—C8—H8B109.5
H1A—C1—H1B109.5H8A—C8—H8B109.5
C2—C1—H1C109.5C7—C8—H8C109.5
H1A—C1—H1C109.5H8A—C8—H8C109.5
H1B—C1—H1C109.5H8B—C8—H8C109.5
O1—C5—N1126.0 (7)N1—C9—C10114.8 (5)
O1—C5—C4125.5 (7)N1—C9—H9A108.6
N1—C5—C4108.6 (5)C10—C9—H9A108.6
O2—C4—C5111.3 (5)N1—C9—H9B108.6
O2—C4—C3114.2 (5)C10—C9—H9B108.6
C5—C4—C3103.2 (6)H9A—C9—H9B107.5
O2—C4—H4109.3C11—C10—C15118.0 (6)
C5—C4—H4109.3C11—C10—C9121.5 (6)
C3—C4—H4109.3C15—C10—C9120.5 (7)
C2—C3—C4106.5 (6)C10—C11—C12123.8 (6)
C2—C3—C6113.4 (5)C10—C11—H11118.1
C4—C3—C6115.6 (6)C12—C11—H11118.1
C2—C3—H3106.9C11—C12—C13116.1 (7)
C4—C3—H3106.9C11—C12—H12122.0
C6—C3—H3106.9C13—C12—H12122.0
C3—C2—N1101.8 (5)C14—C13—C12122.0 (7)
C3—C2—C1114.3 (6)C14—C13—H13119.0
N1—C2—C1112.6 (5)C12—C13—H13119.0
C3—C2—H2109.3C13—C14—C15119.8 (7)
N1—C2—H2109.3C13—C14—H14120.1
C1—C2—H2109.3C15—C14—H14120.1
O3—C6—O4124.4 (6)C14—C15—C10120.3 (7)
O3—C6—C3124.7 (6)C14—C15—H15119.9
O4—C6—C3110.8 (5)C10—C15—H15119.9
O4—C7—C8106.5 (5)
C9—N1—C5—O13.8 (10)C7—O4—C6—O31.4 (10)
C2—N1—C5—O1172.5 (6)C7—O4—C6—C3−176.0 (5)
C9—N1—C5—C4−177.3 (5)C2—C3—C6—O3−8.4 (10)
C2—N1—C5—C4−8.6 (7)C4—C3—C6—O3−131.8 (7)
O1—C5—C4—O247.3 (8)C2—C3—C6—O4169.1 (6)
N1—C5—C4—O2−131.6 (5)C4—C3—C6—O445.7 (8)
O1—C5—C4—C3170.2 (6)C6—O4—C7—C8−170.9 (6)
N1—C5—C4—C3−8.7 (6)C5—N1—C9—C10108.7 (6)
O2—C4—C3—C2143.4 (5)C2—N1—C9—C10−58.8 (8)
C5—C4—C3—C222.5 (6)N1—C9—C10—C11140.9 (6)
O2—C4—C3—C6−89.6 (7)N1—C9—C10—C15−40.8 (9)
C5—C4—C3—C6149.5 (5)C15—C10—C11—C12−1.0 (10)
C4—C3—C2—N1−26.7 (6)C9—C10—C11—C12177.4 (6)
C6—C3—C2—N1−155.0 (5)C10—C11—C12—C131.2 (10)
C4—C3—C2—C1−148.5 (5)C11—C12—C13—C140.2 (10)
C6—C3—C2—C183.3 (7)C12—C13—C14—C15−1.7 (11)
C5—N1—C2—C322.5 (7)C13—C14—C15—C101.9 (11)
C9—N1—C2—C3−168.9 (6)C11—C10—C15—C14−0.6 (9)
C5—N1—C2—C1145.4 (5)C9—C10—C15—C14−179.0 (6)
C9—N1—C2—C1−46.0 (8)
Cg is the centroid of the C10–C15 ring.
D—H···AD—HH···AD···AD—H···A
O2—H2O···O1i0.93 (5)1.87 (5)2.795 (7)171 (4)
C7—H7B···O4ii0.992.573.555 (9)173
C4—H4···O3iii1.02.403.292 (7)149
C14—H14···Cg1ii0.952.813.612 (8)142
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C10–C15 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2O⋯O1i0.93 (5)1.87 (5)2.795 (7)171 (4)
C7—H7B⋯O4ii0.992.573.555 (9)173
C4—H4⋯O3iii1.02.403.292 (7)149
C14—H14⋯Cg1ii0.952.813.612 (8)142

Symmetry codes: (i) ; (ii) ; (iii) .

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