| Literature DB >> 21580755 |
Ye Bi1.
Abstract
In the title compound, C(6)H(16)N(2)O(2+)·SO(4) (2-)·CH(3)OH, the morpholinium ring of the dication adopts a chair conformation. The crystal structure is stabilized by an extensive three-dimensional network of inter-molecular O-H⋯O, N-H⋯O, O-H⋯S and N-H⋯S hydrogen bonds.Entities:
Year: 2010 PMID: 21580755 PMCID: PMC2984010 DOI: 10.1107/S1600536810010846
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H16N2O2+·SO42−·CH4O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 2104 reflections |
| θ = 2.2–27.7° | |
| µ = 0.28 mm−1 | |
| β = 106.395 (11)° | Block, colorless |
| 0.20 × 0.18 × 0.18 mm | |
| Bruker SMART 1000 CCD area-detector diffractometer | 2462 independent reflections |
| Radiation source: fine-focus sealed tube | 1726 reflections with |
| graphite | |
| ω scans | θmax = 27.0°, θmin = 2.7° |
| Absorption correction: multi-scan ( | |
| 5674 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2462 reflections | (Δ/σ)max < 0.001 |
| 151 parameters | Δρmax = 0.62 e Å−3 |
| 1 restraint | Δρmin = −0.87 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.35803 (6) | 0.59946 (11) | 0.06772 (9) | 0.0369 (4) | |
| O1 | 0.3987 (2) | 0.5157 (3) | 0.2047 (3) | 0.0523 (8) | |
| O2 | 0.3969 (2) | 0.7579 (3) | 0.0786 (3) | 0.0557 (8) | |
| O3 | 0.3768 (2) | 0.5166 (4) | −0.0531 (3) | 0.0574 (9) | |
| O4 | 0.2617 (2) | 0.6167 (5) | 0.0429 (5) | 0.0772 (11) | |
| O5 | 0.1552 (3) | 0.3688 (5) | 1.0088 (7) | 0.1071 (18) | |
| H5 | 0.1834 | 0.4507 | 1.0182 | 0.161* | |
| O6 | 0.9107 (2) | 0.4451 (4) | 0.5902 (3) | 0.0606 (9) | |
| N1 | 0.7246 (2) | 0.5104 (4) | 0.4511 (3) | 0.0371 (7) | |
| N2 | 0.51382 (19) | 0.7510 (4) | 0.3894 (3) | 0.0403 (8) | |
| H2A | 0.5402 | 0.8420 | 0.3841 | 0.061* | |
| H2B | 0.4754 | 0.7621 | 0.4426 | 0.061* | |
| H2C | 0.4846 | 0.7192 | 0.2993 | 0.061* | |
| C1 | 0.7681 (3) | 0.5356 (5) | 0.6131 (4) | 0.0469 (10) | |
| H1A | 0.7247 | 0.5183 | 0.6673 | 0.056* | |
| H1B | 0.7893 | 0.6422 | 0.6300 | 0.056* | |
| C2 | 0.8462 (3) | 0.4232 (7) | 0.6667 (5) | 0.0593 (12) | |
| H2D | 0.8736 | 0.4392 | 0.7709 | 0.071* | |
| H2E | 0.8242 | 0.3168 | 0.6528 | 0.071* | |
| C3 | 0.8723 (3) | 0.4061 (6) | 0.4418 (5) | 0.0558 (12) | |
| H3A | 0.8513 | 0.2991 | 0.4351 | 0.067* | |
| H3B | 0.9174 | 0.4135 | 0.3895 | 0.067* | |
| C4 | 0.7949 (3) | 0.5129 (5) | 0.3698 (4) | 0.0471 (10) | |
| H4A | 0.8168 | 0.6186 | 0.3682 | 0.056* | |
| H4B | 0.7684 | 0.4801 | 0.2690 | 0.056* | |
| C5 | 0.6558 (2) | 0.6314 (5) | 0.3848 (4) | 0.0394 (8) | |
| H5A | 0.6304 | 0.6094 | 0.2810 | 0.047* | |
| H5B | 0.6841 | 0.7330 | 0.3938 | 0.047* | |
| C6 | 0.5817 (3) | 0.6351 (5) | 0.4589 (5) | 0.0497 (10) | |
| H6A | 0.5542 | 0.5328 | 0.4524 | 0.060* | |
| H6B | 0.6065 | 0.6604 | 0.5621 | 0.060* | |
| C7 | 0.0750 (4) | 0.3876 (9) | 0.9066 (8) | 0.0911 (19) | |
| H7A | 0.0295 | 0.3351 | 0.9386 | 0.137* | |
| H7B | 0.0778 | 0.3444 | 0.8146 | 0.137* | |
| H7C | 0.0611 | 0.4968 | 0.8944 | 0.137* | |
| H1 | 0.702 (4) | 0.413 (3) | 0.437 (6) | 0.080* |
| S1 | 0.0318 (6) | 0.0445 (6) | 0.0335 (6) | 0.0004 (3) | 0.0079 (4) | 0.0002 (3) |
| O1 | 0.0618 (19) | 0.0560 (18) | 0.0355 (14) | −0.0019 (14) | 0.0078 (13) | 0.0054 (11) |
| O2 | 0.068 (2) | 0.0439 (17) | 0.0592 (18) | −0.0076 (14) | 0.0246 (14) | −0.0018 (12) |
| O3 | 0.071 (2) | 0.065 (2) | 0.0364 (14) | 0.0049 (15) | 0.0159 (13) | −0.0076 (12) |
| O4 | 0.0357 (18) | 0.089 (3) | 0.107 (3) | 0.0122 (15) | 0.0190 (18) | 0.005 (2) |
| O5 | 0.070 (3) | 0.081 (3) | 0.143 (4) | −0.002 (2) | −0.016 (3) | 0.016 (3) |
| O6 | 0.0330 (15) | 0.092 (2) | 0.0519 (17) | 0.0065 (15) | 0.0046 (12) | −0.0012 (16) |
| N1 | 0.0305 (15) | 0.0446 (17) | 0.0346 (15) | −0.0036 (12) | 0.0068 (11) | −0.0012 (12) |
| N2 | 0.0317 (16) | 0.0509 (19) | 0.0376 (15) | −0.0020 (12) | 0.0085 (12) | −0.0046 (13) |
| C1 | 0.039 (2) | 0.067 (3) | 0.0326 (18) | 0.0013 (18) | 0.0064 (14) | 0.0002 (16) |
| C2 | 0.043 (2) | 0.089 (3) | 0.039 (2) | 0.009 (2) | 0.0008 (17) | 0.011 (2) |
| C3 | 0.036 (2) | 0.081 (3) | 0.050 (2) | 0.0041 (19) | 0.0122 (17) | −0.0046 (19) |
| C4 | 0.036 (2) | 0.068 (3) | 0.0380 (18) | −0.0050 (18) | 0.0119 (15) | −0.0039 (16) |
| C5 | 0.0333 (18) | 0.055 (2) | 0.0287 (16) | 0.0000 (15) | 0.0072 (13) | −0.0001 (14) |
| C6 | 0.050 (2) | 0.059 (2) | 0.047 (2) | 0.0108 (19) | 0.0257 (17) | 0.0136 (18) |
| C7 | 0.049 (3) | 0.108 (5) | 0.109 (5) | 0.005 (3) | 0.011 (3) | 0.000 (4) |
| S1—O3 | 1.446 (3) | C1—H1A | 0.9700 |
| S1—O4 | 1.461 (4) | C1—H1B | 0.9700 |
| S1—O1 | 1.463 (3) | C2—H2D | 0.9700 |
| S1—O2 | 1.479 (3) | C2—H2E | 0.9700 |
| O5—C7 | 1.358 (7) | C3—C4 | 1.516 (6) |
| O5—H5 | 0.8200 | C3—H3A | 0.9700 |
| O6—C3 | 1.405 (5) | C3—H3B | 0.9700 |
| O6—C2 | 1.409 (6) | C4—H4A | 0.9700 |
| N1—C5 | 1.497 (5) | C4—H4B | 0.9700 |
| N1—C4 | 1.508 (5) | C5—C6 | 1.512 (5) |
| N1—C1 | 1.509 (5) | C5—H5A | 0.9700 |
| N1—H1 | 0.899 (10) | C5—H5B | 0.9700 |
| N2—C6 | 1.466 (5) | C6—H6A | 0.9700 |
| N2—H2A | 0.8900 | C6—H6B | 0.9700 |
| N2—H2B | 0.8900 | C7—H7A | 0.9600 |
| N2—H2C | 0.8900 | C7—H7B | 0.9600 |
| C1—C2 | 1.524 (6) | C7—H7C | 0.9600 |
| O3—S1—O4 | 110.5 (2) | H2D—C2—H2E | 108.0 |
| O3—S1—O1 | 109.1 (2) | O6—C3—C4 | 111.5 (4) |
| O4—S1—O1 | 111.2 (2) | O6—C3—H3A | 109.3 |
| O3—S1—O2 | 109.6 (2) | C4—C3—H3A | 109.3 |
| O4—S1—O2 | 107.5 (2) | O6—C3—H3B | 109.3 |
| O1—S1—O2 | 108.85 (17) | C4—C3—H3B | 109.3 |
| C7—O5—H5 | 109.5 | H3A—C3—H3B | 108.0 |
| C3—O6—C2 | 108.6 (3) | N1—C4—C3 | 111.3 (3) |
| C5—N1—C4 | 108.3 (3) | N1—C4—H4A | 109.4 |
| C5—N1—C1 | 113.0 (3) | C3—C4—H4A | 109.4 |
| C4—N1—C1 | 109.6 (3) | N1—C4—H4B | 109.4 |
| C5—N1—H1 | 112 (4) | C3—C4—H4B | 109.4 |
| C4—N1—H1 | 104 (4) | H4A—C4—H4B | 108.0 |
| C1—N1—H1 | 109 (4) | N1—C5—C6 | 111.7 (3) |
| C6—N2—H2A | 109.5 | N1—C5—H5A | 109.3 |
| C6—N2—H2B | 109.5 | C6—C5—H5A | 109.3 |
| H2A—N2—H2B | 109.5 | N1—C5—H5B | 109.3 |
| C6—N2—H2C | 109.5 | C6—C5—H5B | 109.3 |
| H2A—N2—H2C | 109.5 | H5A—C5—H5B | 107.9 |
| H2B—N2—H2C | 109.5 | N2—C6—C5 | 110.8 (3) |
| N1—C1—C2 | 109.6 (3) | N2—C6—H6A | 109.5 |
| N1—C1—H1A | 109.7 | C5—C6—H6A | 109.5 |
| C2—C1—H1A | 109.7 | N2—C6—H6B | 109.5 |
| N1—C1—H1B | 109.7 | C5—C6—H6B | 109.5 |
| C2—C1—H1B | 109.7 | H6A—C6—H6B | 108.1 |
| H1A—C1—H1B | 108.2 | O5—C7—H7A | 109.5 |
| O6—C2—C1 | 111.3 (4) | O5—C7—H7B | 109.5 |
| O6—C2—H2D | 109.4 | H7A—C7—H7B | 109.5 |
| C1—C2—H2D | 109.4 | O5—C7—H7C | 109.5 |
| O6—C2—H2E | 109.4 | H7A—C7—H7C | 109.5 |
| C1—C2—H2E | 109.4 | H7B—C7—H7C | 109.5 |
| H··· | ||||
| O5—H5···O4i | 0.82 | 1.85 | 2.659 (6) | 172 |
| O5—H5···S1i | 0.82 | 2.92 | 3.636 (6) | 147 |
| N2—H2A···O1ii | 0.89 | 2.07 | 2.914 (5) | 158 |
| N2—H2A···O3ii | 0.89 | 2.30 | 3.001 (5) | 135 |
| N2—H2A···S1ii | 0.89 | 2.68 | 3.553 (4) | 167 |
| N2—H2B···O2iii | 0.89 | 2.02 | 2.898 (5) | 168 |
| N2—H2B···O3iii | 0.89 | 2.45 | 3.081 (5) | 128 |
| N2—H2B···S1iii | 0.89 | 2.72 | 3.567 (4) | 160 |
| N2—H2C···O2 | 0.89 | 2.18 | 2.997 (5) | 153 |
| N2—H2C···O1 | 0.89 | 2.23 | 2.930 (4) | 135 |
| N2—H2C···S1 | 0.89 | 2.71 | 3.565 (4) | 162 |
| N1—H1···O2iv | 0.90 (1) | 2.01 (3) | 2.837 (5) | 152 (5) |
| N1—H1···O4iv | 0.90 (1) | 2.60 (3) | 3.382 (6) | 146 (5) |
| N1—H1···S1iv | 0.90 (1) | 2.85 (1) | 3.738 (4) | 172 (5) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O5—H5⋯O4i | 0.82 | 1.85 | 2.659 (6) | 172 |
| O5—H5⋯S1i | 0.82 | 2.92 | 3.636 (6) | 147 |
| N2—H2 | 0.89 | 2.07 | 2.914 (5) | 158 |
| N2—H2 | 0.89 | 2.30 | 3.001 (5) | 135 |
| N2—H2 | 0.89 | 2.68 | 3.553 (4) | 167 |
| N2—H2 | 0.89 | 2.02 | 2.898 (5) | 168 |
| N2—H2 | 0.89 | 2.45 | 3.081 (5) | 128 |
| N2—H2 | 0.89 | 2.72 | 3.567 (4) | 160 |
| N2—H2 | 0.89 | 2.18 | 2.997 (5) | 153 |
| N2—H2 | 0.89 | 2.23 | 2.930 (4) | 135 |
| N2—H2 | 0.89 | 2.71 | 3.565 (4) | 162 |
| N1—H1⋯O2iv | 0.90 (1) | 2.01 (3) | 2.837 (5) | 152 (5) |
| N1—H1⋯O4iv | 0.90 (1) | 2.60 (3) | 3.382 (6) | 146 (5) |
| N1—H1⋯S1iv | 0.90 (1) | 2.85 (1) | 3.738 (4) | 172 (5) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .