Literature DB >> 21580727

5-(4-Fluoro-phen-yl)-4-(4-pyrid-yl)-1,3-oxazol-2-amine.

Pierre Koch, Dieter Schollmeyer, Stefan Laufer.   

Abstract

In the crystal structure of the title compound, C(14)H(10)FN(3)O, the plane of the isoxazole ring makes dihedral angles of 35.72 (9) and 30.00 (9)°, respectively, with those of the 4-fluoro-phenyl and pyridine rings. The plane of the 4-fluoro-phenyl ring makes a dihedral angle of 45.85 (8)° with that of the pyridine ring. The crystal structure is stabilized by inter-molecular N-H⋯N hydrogen bonding. The two types of hydrogen bonds result in two chains, extending along the a axis, which are related by centres of symmetry.

Entities:  

Year:  2010        PMID: 21580727      PMCID: PMC2983790          DOI: 10.1107/S1600536810009189

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of pyridinyloxazoles, see: Peifer et al. (2006 ▶). For p38α MAP kinase inhibitors having a vicinal 4-fluoro­phen­yl/pyridin-4-yl system connected to a five-membered heterocyclic core, see: Abu Thaher et al. (2009 ▶).

Experimental

Crystal data

C14H10FN3O M = 255.25 Orthorhombic, a = 10.1017 (4) Å b = 8.3889 (8) Å c = 29.127 (2) Å V = 2468.3 (3) Å3 Z = 8 Cu Kα radiation μ = 0.84 mm−1 T = 193 K 0.40 × 0.30 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (CORINC; Dräger & Gattow, 1971 ▶) T min = 0.899, T max = 0.997 2331 measured reflections 2331 independent reflections 1859 reflections with I > 2σ(I) 3 standard reflections every 60 min intensity decay: 2%

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.119 S = 1.05 2331 reflections 173 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.17 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: CORINC (Dräger & Gattow, 1971 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810009189/nc2179sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810009189/nc2179Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H10FN3OF(000) = 1056
Mr = 255.25Dx = 1.374 Mg m3
Orthorhombic, PbcaCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ac 2abCell parameters from 25 reflections
a = 10.1017 (4) Åθ = 30–46°
b = 8.3889 (8) ŵ = 0.84 mm1
c = 29.127 (2) ÅT = 193 K
V = 2468.3 (3) Å3Plate, yellow
Z = 80.40 × 0.30 × 0.10 mm
Enraf–Nonius CAD-4 diffractometer1859 reflections with I > 2σ(I)
Radiation source: rotating anodeRint = 0.0000
graphiteθmax = 69.9°, θmin = 3.0°
ω/2θ scansh = 0→12
Absorption correction: ψ scan (CORINC; Dräger & Gattow, 1971)k = 0→10
Tmin = 0.899, Tmax = 0.997l = −35→0
2331 measured reflections3 standard reflections every 60 min
2331 independent reflections intensity decay: 2%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.043H-atom parameters constrained
wR(F2) = 0.119w = 1/[σ2(Fo2) + (0.0607P)2 + 0.5691P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.001
2331 reflectionsΔρmax = 0.20 e Å3
173 parametersΔρmin = −0.17 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.00056 (12)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.14358 (14)0.10350 (16)0.19761 (4)0.0644 (4)
N1−0.13607 (15)0.4430 (3)0.45720 (6)0.0541 (5)
H1A−0.12640.48600.48900.081*
H1B−0.21330.42660.44150.081*
O1−0.03766 (11)0.36315 (17)0.39018 (4)0.0382 (3)
C20.09228 (16)0.3491 (2)0.37416 (6)0.0329 (4)
C30.17254 (16)0.3972 (2)0.40860 (6)0.0321 (4)
N40.09727 (14)0.44405 (19)0.44663 (5)0.0362 (4)
C5−0.02508 (16)0.4204 (2)0.43365 (6)0.0378 (4)
C60.10541 (15)0.2869 (2)0.32790 (6)0.0325 (4)
C70.20470 (17)0.3409 (2)0.29845 (6)0.0371 (4)
H70.26440.42080.30870.044*
C80.21765 (18)0.2803 (2)0.25471 (6)0.0423 (5)
H80.28560.31750.23480.051*
C90.1303 (2)0.1652 (2)0.24045 (6)0.0435 (5)
C100.0300 (2)0.1098 (2)0.26787 (7)0.0463 (5)
H10−0.03000.03140.25690.056*
C110.01776 (17)0.1703 (2)0.31191 (6)0.0394 (4)
H11−0.05070.13240.33140.047*
C120.31809 (16)0.4044 (2)0.41163 (6)0.0316 (4)
C130.37771 (16)0.5163 (2)0.43992 (6)0.0348 (4)
H130.32540.58910.45710.042*
C140.51470 (17)0.5205 (2)0.44293 (6)0.0395 (4)
H140.55390.59910.46210.047*
N150.59471 (15)0.4203 (2)0.42047 (5)0.0439 (4)
C160.53651 (17)0.3118 (3)0.39376 (7)0.0434 (5)
H160.59150.23880.37770.052*
C170.40105 (17)0.2992 (2)0.38802 (6)0.0371 (4)
H170.36490.22010.36830.045*
U11U22U33U12U13U23
F10.0878 (10)0.0654 (8)0.0399 (6)0.0139 (7)−0.0042 (6)−0.0098 (6)
N10.0211 (7)0.0942 (14)0.0470 (9)0.0003 (8)0.0007 (7)−0.0199 (9)
O10.0204 (6)0.0547 (8)0.0394 (7)0.0007 (5)−0.0015 (5)−0.0051 (6)
C20.0199 (8)0.0389 (9)0.0400 (9)0.0008 (7)0.0013 (7)0.0024 (7)
C30.0233 (8)0.0345 (8)0.0383 (9)−0.0002 (7)0.0002 (7)0.0010 (7)
N40.0236 (7)0.0476 (9)0.0375 (8)−0.0002 (6)−0.0009 (6)−0.0051 (7)
C50.0237 (8)0.0513 (11)0.0384 (10)0.0011 (8)−0.0010 (7)−0.0059 (8)
C60.0229 (7)0.0369 (9)0.0378 (9)0.0032 (7)−0.0047 (7)0.0036 (7)
C70.0294 (8)0.0396 (9)0.0422 (10)0.0006 (7)−0.0020 (7)0.0017 (8)
C80.0394 (10)0.0465 (11)0.0410 (10)0.0096 (8)0.0044 (8)0.0064 (9)
C90.0513 (11)0.0455 (11)0.0339 (9)0.0147 (9)−0.0062 (8)−0.0038 (8)
C100.0401 (10)0.0481 (12)0.0507 (11)0.0015 (9)−0.0138 (9)−0.0063 (9)
C110.0258 (8)0.0480 (11)0.0444 (10)−0.0017 (8)−0.0047 (7)−0.0005 (9)
C120.0222 (8)0.0362 (9)0.0364 (9)0.0005 (7)−0.0014 (7)0.0050 (7)
C130.0269 (8)0.0406 (10)0.0368 (9)−0.0008 (7)0.0002 (7)−0.0003 (8)
C140.0279 (8)0.0510 (11)0.0396 (10)−0.0071 (8)−0.0049 (7)0.0010 (9)
N150.0245 (7)0.0632 (11)0.0441 (9)−0.0009 (7)−0.0029 (6)0.0010 (8)
C160.0274 (9)0.0548 (12)0.0480 (11)0.0074 (8)−0.0006 (8)−0.0032 (9)
C170.0281 (9)0.0391 (10)0.0442 (10)0.0020 (7)−0.0034 (7)−0.0023 (8)
F1—C91.358 (2)C8—H80.9500
N1—C51.328 (2)C9—C101.372 (3)
N1—H1A0.9994C10—C111.385 (3)
N1—H1B0.9144C10—H100.9500
O1—C51.360 (2)C11—H110.9500
O1—C21.3981 (19)C12—C131.386 (2)
C2—C31.351 (2)C12—C171.398 (2)
C2—C61.451 (2)C13—C141.387 (2)
C3—N41.400 (2)C13—H130.9500
C3—C121.474 (2)C14—N151.337 (3)
N4—C51.308 (2)C14—H140.9500
C6—C71.395 (2)N15—C161.334 (3)
C6—C111.399 (2)C16—C171.383 (2)
C7—C81.378 (3)C16—H160.9500
C7—H70.9500C17—H170.9500
C8—C91.372 (3)
C5—N1—H1A116.6F1—C9—C8118.89 (18)
C5—N1—H1B116.2C10—C9—C8122.51 (17)
H1A—N1—H1B126.9C9—C10—C11118.74 (18)
C5—O1—C2104.64 (13)C9—C10—H10120.6
C3—C2—O1106.88 (15)C11—C10—H10120.6
C3—C2—C6137.89 (15)C10—C11—C6120.54 (18)
O1—C2—C6115.22 (14)C10—C11—H11119.7
C2—C3—N4110.20 (14)C6—C11—H11119.7
C2—C3—C12130.92 (17)C13—C12—C17117.35 (15)
N4—C3—C12118.87 (15)C13—C12—C3119.78 (16)
C5—N4—C3104.01 (14)C17—C12—C3122.85 (16)
N4—C5—N1128.84 (17)C12—C13—C14119.23 (17)
N4—C5—O1114.27 (15)C12—C13—H13120.4
N1—C5—O1116.89 (15)C14—C13—H13120.4
C7—C6—C11118.51 (17)N15—C14—C13123.78 (18)
C7—C6—C2121.31 (15)N15—C14—H14118.1
C11—C6—C2120.18 (16)C13—C14—H14118.1
C8—C7—C6121.12 (17)C16—N15—C14116.61 (16)
C8—C7—H7119.4N15—C16—C17123.99 (18)
C6—C7—H7119.4N15—C16—H16118.0
C9—C8—C7118.57 (18)C17—C16—H16118.0
C9—C8—H8120.7C16—C17—C12119.03 (17)
C7—C8—H8120.7C16—C17—H17120.5
F1—C9—C10118.59 (19)C12—C17—H17120.5
C5—O1—C2—C30.36 (19)C7—C8—C9—F1−179.13 (16)
C5—O1—C2—C6179.09 (15)C7—C8—C9—C100.8 (3)
O1—C2—C3—N4−0.7 (2)F1—C9—C10—C11178.78 (17)
C6—C2—C3—N4−179.0 (2)C8—C9—C10—C11−1.1 (3)
O1—C2—C3—C12178.41 (17)C9—C10—C11—C60.6 (3)
C6—C2—C3—C120.1 (4)C7—C6—C11—C100.3 (3)
C2—C3—N4—C50.7 (2)C2—C6—C11—C10−179.70 (16)
C12—C3—N4—C5−178.50 (16)C2—C3—C12—C13151.88 (19)
C3—N4—C5—N1178.7 (2)N4—C3—C12—C13−29.1 (2)
C3—N4—C5—O1−0.5 (2)C2—C3—C12—C17−30.1 (3)
C2—O1—C5—N40.1 (2)N4—C3—C12—C17148.94 (17)
C2—O1—C5—N1−179.15 (18)C17—C12—C13—C141.0 (3)
C3—C2—C6—C7−37.0 (3)C3—C12—C13—C14179.18 (17)
O1—C2—C6—C7144.77 (16)C12—C13—C14—N15−1.1 (3)
C3—C2—C6—C11142.9 (2)C13—C14—N15—C160.3 (3)
O1—C2—C6—C11−35.3 (2)C14—N15—C16—C170.5 (3)
C11—C6—C7—C8−0.6 (3)N15—C16—C17—C12−0.6 (3)
C2—C6—C7—C8179.34 (16)C13—C12—C17—C16−0.3 (3)
C6—C7—C8—C90.1 (3)C3—C12—C17—C16−178.35 (18)
D—H···AD—HH···AD···AD—H···A
N1—H1A···N4i1.001.992.983 (2)175
N1—H1B···N15ii0.912.032.929 (2)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯N4i1.001.992.983 (2)175
N1—H1B⋯N15ii0.912.032.929 (2)165

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  New approaches to the treatment of inflammatory disorders small molecule inhibitors of p38 MAP kinase.

Authors:  Christian Peifer; Gerd Wagner; Stefan Laufer
Journal:  Curr Top Med Chem       Date:  2006       Impact factor: 3.295

3.  Role of the hydrogen bonding heteroatom-Lys53 interaction between the p38alpha mitogen-activated protein (MAP) kinase and pyridinyl-substituted 5-membered heterocyclic ring inhibitors.

Authors:  Bassam Abu Thaher; Pierre Koch; Verena Schattel; Stefan Laufer
Journal:  J Med Chem       Date:  2009-04-23       Impact factor: 7.446

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.