Literature DB >> 21580676

1'-(2-Chloro-phen-yl)-5,6,5',6',7',7a'-hexa-hydro-1'H,1''H-dispiro-[imidazo[2,1-b][1,3]thia-zole-2,2'-pyrrolizine-3'(2'H),3''-indole]-2'',3(2H,3''H)-dione.

Bo Liao1, Aiting Zheng, Bin Liu.   

Abstract

In the title compound, C(24)H(21)ClN(4)O(2)S, the two adjacent spiro junctions link an almost planar (r.m.s. deviation = 0.017 Å) 2-oxindole ring, a hexa-hydro-1H-pyrrolizine ring and a tetra-hydro-imidazo[2,1-b]thia-zole ring. In the crystal, inversion dimers linked by pairs of N-H⋯N hydrogen bonds occur, generating an R(2) (2)(16) loop.

Entities:  

Year:  2010        PMID: 21580676      PMCID: PMC2983913          DOI: 10.1107/S1600536810009323

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For backgound to the properties of spiro-compounds, see: James et al. (1991 ▶); Kobayashi et al. (1991 ▶). For further synthetic details, see: Caramella & Grunanger (1984 ▶).

Experimental

Crystal data

C24H21ClN4O2S M = 464.96 Triclinic, a = 8.6798 (18) Å b = 11.078 (2) Å c = 11.372 (2) Å α = 78.984 (7)° β = 81.867 (10)° γ = 81.718 (11)° V = 1054.8 (4) Å3 Z = 2 Cu Kα radiation μ = 2.78 mm−1 T = 113 K 0.28 × 0.24 × 0.20 mm

Data collection

Rigaku Saturn CCD area-detector diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2001 ▶) T min = 0.510, T max = 0.606 21105 measured reflections 3986 independent reflections 3512 reflections with I > 2σ(I) R int = 0.075

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.113 S = 1.02 3986 reflections 294 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.41 e Å−3 Δρmin = −0.53 e Å−3 Data collection: CrystalClear (Rigaku, 2001 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810009323/hb5356sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810009323/hb5356Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H21ClN4O2SZ = 2
Mr = 464.96F(000) = 484
Triclinic, P1Dx = 1.464 Mg m3
Hall symbol: -P 1Cu Kα radiation, λ = 1.54187 Å
a = 8.6798 (18) ÅCell parameters from 2350 reflections
b = 11.078 (2) Åθ = 21.5–67.5°
c = 11.372 (2) ŵ = 2.78 mm1
α = 78.984 (7)°T = 113 K
β = 81.867 (10)°Block, colorless
γ = 81.718 (11)°0.28 × 0.24 × 0.20 mm
V = 1054.8 (4) Å3
Rigaku Saturn CCD area-detector diffractometer3986 independent reflections
Radiation source: fine-focus sealed tube3512 reflections with I > 2σ(I)
multilayerRint = 0.075
Detector resolution: 7.31 pixels mm-1θmax = 72.1°, θmin = 4.0°
ω and φ scansh = −9→10
Absorption correction: multi-scan (CrystalClear; Rigaku, 2001)k = −13→13
Tmin = 0.510, Tmax = 0.606l = −14→14
21105 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.043H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.113w = 1/[σ2(Fo2) + (0.0802P)2] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
3986 reflectionsΔρmax = 0.41 e Å3
294 parametersΔρmin = −0.53 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0128 (10)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.24861 (7)0.40648 (4)0.48838 (4)0.03409 (17)
S10.43258 (5)0.19148 (3)0.16037 (3)0.01711 (15)
O10.13769 (14)0.10571 (11)0.44297 (10)0.0206 (3)
O20.21446 (14)0.28209 (11)−0.03632 (10)0.0211 (3)
N10.37173 (17)0.02732 (13)0.35068 (12)0.0179 (3)
N20.60368 (17)−0.02950 (13)0.24368 (12)0.0202 (3)
N30.20977 (17)0.07131 (13)−0.01187 (12)0.0182 (3)
N4−0.03261 (16)0.24825 (12)0.17028 (12)0.0174 (3)
C10.22952 (19)0.20199 (14)0.23784 (13)0.0150 (3)
C20.2381 (2)0.10826 (15)0.35725 (13)0.0162 (3)
C30.4828 (2)0.05014 (15)0.25168 (13)0.0165 (3)
C40.4173 (2)−0.09606 (15)0.41941 (15)0.0219 (4)
H4A0.3472−0.15650.41190.026*
H4B0.4192−0.09360.50580.026*
C50.5847 (2)−0.12500 (16)0.35418 (15)0.0228 (4)
H5A0.6644−0.12260.40760.027*
H5B0.5979−0.20860.33240.027*
C60.15375 (19)0.33307 (14)0.26047 (14)0.0163 (3)
H60.10570.32310.34650.020*
C70.0155 (2)0.36758 (15)0.18111 (14)0.0179 (3)
H70.05090.41450.09990.021*
C80.11006 (19)0.16210 (15)0.15955 (13)0.0150 (3)
C90.18421 (19)0.18303 (15)0.02409 (14)0.0169 (3)
C100.15500 (19)−0.02286 (15)0.07815 (14)0.0165 (3)
C110.09088 (19)0.02528 (15)0.18252 (14)0.0160 (3)
C120.0259 (2)−0.05294 (15)0.28191 (14)0.0190 (4)
H12−0.0177−0.02200.35330.023*
C130.0256 (2)−0.17737 (16)0.27560 (16)0.0217 (4)
H13−0.0187−0.23140.34310.026*
C140.0894 (2)−0.22283 (16)0.17121 (16)0.0228 (4)
H140.0880−0.30780.16840.027*
C150.1554 (2)−0.14631 (15)0.07089 (15)0.0214 (4)
H150.1992−0.1777−0.00030.026*
C16−0.1309 (2)0.43859 (16)0.24054 (16)0.0237 (4)
H16A−0.16880.51320.18430.028*
H16B−0.10820.46410.31450.028*
C17−0.2531 (2)0.34589 (17)0.27121 (18)0.0287 (4)
H17A−0.31340.35110.35110.034*
H17B−0.32680.36170.20950.034*
C18−0.1555 (2)0.21991 (16)0.27193 (16)0.0220 (4)
H18A−0.11010.19020.34890.026*
H18B−0.21820.15730.25770.026*
C190.2614 (2)0.43184 (15)0.24310 (14)0.0179 (3)
C200.3102 (2)0.47270 (15)0.33957 (15)0.0208 (4)
C210.4077 (2)0.56475 (16)0.32325 (17)0.0261 (4)
H210.43770.59040.39090.031*
C220.4612 (2)0.61903 (16)0.20712 (18)0.0266 (4)
H220.52880.68170.19450.032*
C230.4147 (2)0.58077 (16)0.10959 (16)0.0253 (4)
H230.45000.61790.02980.030*
C240.3173 (2)0.48903 (16)0.12801 (15)0.0222 (4)
H240.28740.46410.05990.027*
H10.255 (3)0.064 (2)−0.085 (2)0.032 (6)*
U11U22U33U12U13U23
Cl10.0545 (4)0.0322 (3)0.0213 (2)−0.0151 (2)−0.0128 (2)−0.00515 (18)
S10.0177 (2)0.0147 (2)0.0184 (2)0.00019 (16)−0.00128 (15)−0.00395 (15)
O10.0237 (7)0.0229 (6)0.0163 (6)−0.0034 (5)−0.0004 (5)−0.0073 (4)
O20.0280 (7)0.0175 (6)0.0183 (6)−0.0026 (5)−0.0036 (5)−0.0037 (4)
N10.0221 (8)0.0151 (7)0.0167 (6)0.0001 (6)−0.0035 (5)−0.0039 (5)
N20.0233 (8)0.0173 (7)0.0213 (7)0.0020 (6)−0.0052 (6)−0.0083 (5)
N30.0240 (8)0.0164 (7)0.0156 (7)0.0008 (6)−0.0024 (5)−0.0089 (5)
N40.0185 (7)0.0142 (7)0.0213 (7)0.0019 (6)−0.0037 (5)−0.0096 (5)
C10.0170 (8)0.0151 (8)0.0142 (7)−0.0015 (6)−0.0004 (6)−0.0073 (6)
C20.0214 (9)0.0145 (8)0.0156 (7)−0.0035 (6)−0.0042 (6)−0.0070 (6)
C30.0202 (9)0.0148 (8)0.0172 (7)−0.0017 (7)−0.0049 (6)−0.0079 (6)
C40.0292 (10)0.0141 (8)0.0223 (8)0.0004 (7)−0.0072 (7)−0.0024 (6)
C50.0290 (10)0.0166 (8)0.0237 (8)0.0030 (7)−0.0080 (7)−0.0065 (6)
C60.0190 (9)0.0141 (8)0.0176 (7)−0.0007 (6)−0.0021 (6)−0.0082 (6)
C70.0209 (9)0.0124 (8)0.0219 (8)0.0007 (7)−0.0045 (6)−0.0076 (6)
C80.0171 (8)0.0154 (8)0.0144 (7)−0.0006 (6)−0.0024 (6)−0.0078 (5)
C90.0184 (8)0.0176 (8)0.0162 (7)0.0018 (6)−0.0055 (6)−0.0075 (6)
C100.0159 (8)0.0174 (8)0.0181 (7)0.0017 (6)−0.0050 (6)−0.0081 (6)
C110.0166 (8)0.0148 (8)0.0190 (7)0.0010 (6)−0.0050 (6)−0.0089 (6)
C120.0204 (9)0.0185 (8)0.0200 (8)−0.0012 (7)−0.0036 (6)−0.0080 (6)
C130.0205 (9)0.0179 (8)0.0270 (8)−0.0030 (7)−0.0037 (7)−0.0033 (6)
C140.0240 (10)0.0138 (8)0.0335 (9)0.0013 (7)−0.0082 (7)−0.0101 (7)
C150.0253 (9)0.0178 (8)0.0238 (8)0.0037 (7)−0.0063 (7)−0.0126 (6)
C160.0228 (9)0.0187 (9)0.0319 (9)0.0035 (7)−0.0052 (7)−0.0130 (7)
C170.0216 (10)0.0236 (10)0.0416 (10)0.0026 (8)−0.0005 (8)−0.0139 (8)
C180.0189 (9)0.0194 (8)0.0289 (9)−0.0003 (7)−0.0008 (7)−0.0101 (6)
C190.0200 (9)0.0116 (7)0.0238 (8)0.0028 (6)−0.0037 (6)−0.0101 (6)
C200.0238 (9)0.0159 (8)0.0251 (8)0.0012 (7)−0.0077 (7)−0.0082 (6)
C210.0259 (10)0.0185 (9)0.0381 (10)0.0006 (7)−0.0108 (8)−0.0127 (7)
C220.0226 (10)0.0163 (9)0.0438 (11)−0.0034 (7)−0.0020 (8)−0.0132 (7)
C230.0277 (10)0.0172 (8)0.0302 (9)−0.0021 (7)0.0045 (7)−0.0083 (7)
C240.0271 (10)0.0167 (8)0.0242 (8)0.0009 (7)−0.0016 (7)−0.0106 (6)
Cl1—C201.7522 (18)C8—C91.571 (2)
S1—C31.7407 (16)C10—C151.385 (2)
S1—C11.8539 (17)C10—C111.404 (2)
O1—C21.211 (2)C11—C121.390 (2)
O2—C91.220 (2)C12—C131.394 (2)
N1—C21.363 (2)C12—H120.9500
N1—C31.384 (2)C13—C141.390 (2)
N1—C41.469 (2)C13—H130.9500
N2—C31.275 (2)C14—C151.390 (3)
N2—C51.486 (2)C14—H140.9500
N3—C91.355 (2)C15—H150.9500
N3—C101.400 (2)C16—C171.540 (3)
N3—H10.88 (2)C16—H16A0.9900
N4—C81.456 (2)C16—H16B0.9900
N4—C71.474 (2)C17—C181.524 (2)
N4—C181.477 (2)C17—H17A0.9900
C1—C21.548 (2)C17—H17B0.9900
C1—C61.558 (2)C18—H18A0.9900
C1—C81.614 (2)C18—H18B0.9900
C4—C51.555 (3)C19—C241.394 (2)
C4—H4A0.9900C19—C201.401 (2)
C4—H4B0.9900C20—C211.387 (3)
C5—H5A0.9900C21—C221.387 (3)
C5—H5B0.9900C21—H210.9500
C6—C191.507 (2)C22—C231.389 (3)
C6—C71.563 (2)C22—H220.9500
C6—H61.0000C23—C241.381 (3)
C7—C161.537 (2)C23—H230.9500
C7—H71.0000C24—H240.9500
C8—C111.517 (2)
C3—S1—C191.34 (8)N3—C9—C8107.47 (13)
C2—N1—C3118.08 (13)C15—C10—N3127.81 (15)
C2—N1—C4132.63 (14)C15—C10—C11121.99 (16)
C3—N1—C4108.49 (13)N3—C10—C11110.17 (14)
C3—N2—C5105.37 (14)C12—C11—C10119.27 (15)
C9—N3—C10112.22 (13)C12—C11—C8132.62 (14)
C9—N3—H1120.9 (15)C10—C11—C8108.11 (14)
C10—N3—H1126.9 (15)C11—C12—C13119.24 (15)
C8—N4—C7106.79 (13)C11—C12—H12120.4
C8—N4—C18119.35 (13)C13—C12—H12120.4
C7—N4—C18106.15 (12)C14—C13—C12120.45 (17)
C2—C1—C6111.70 (12)C14—C13—H13119.8
C2—C1—C8109.24 (13)C12—C13—H13119.8
C6—C1—C8103.51 (12)C13—C14—C15121.26 (16)
C2—C1—S1104.85 (11)C13—C14—H14119.4
C6—C1—S1116.29 (11)C15—C14—H14119.4
C8—C1—S1111.25 (10)C10—C15—C14117.79 (15)
O1—C2—N1125.06 (15)C10—C15—H15121.1
O1—C2—C1124.45 (15)C14—C15—H15121.1
N1—C2—C1110.46 (13)C7—C16—C17104.65 (13)
N2—C3—N1117.43 (14)C7—C16—H16A110.8
N2—C3—S1130.89 (13)C17—C16—H16A110.8
N1—C3—S1111.62 (12)C7—C16—H16B110.8
N1—C4—C599.92 (13)C17—C16—H16B110.8
N1—C4—H4A111.8H16A—C16—H16B108.9
C5—C4—H4A111.8C18—C17—C16104.10 (15)
N1—C4—H4B111.8C18—C17—H17A110.9
C5—C4—H4B111.8C16—C17—H17A110.9
H4A—C4—H4B109.5C18—C17—H17B110.9
N2—C5—C4107.58 (13)C16—C17—H17B110.9
N2—C5—H5A110.2H17A—C17—H17B109.0
C4—C5—H5A110.2N4—C18—C17101.57 (14)
N2—C5—H5B110.2N4—C18—H18A111.5
C4—C5—H5B110.2C17—C18—H18A111.5
H5A—C5—H5B108.5N4—C18—H18B111.5
C19—C6—C1117.03 (14)C17—C18—H18B111.5
C19—C6—C7113.84 (13)H18A—C18—H18B109.3
C1—C6—C7105.08 (12)C24—C19—C20116.04 (16)
C19—C6—H6106.8C24—C19—C6121.04 (15)
C1—C6—H6106.8C20—C19—C6122.91 (15)
C7—C6—H6106.8C21—C20—C19122.76 (17)
N4—C7—C16105.48 (14)C21—C20—Cl1117.18 (13)
N4—C7—C6105.24 (12)C19—C20—Cl1120.06 (14)
C16—C7—C6113.85 (13)C20—C21—C22119.36 (17)
N4—C7—H7110.7C20—C21—H21120.3
C16—C7—H7110.7C22—C21—H21120.3
C6—C7—H7110.7C21—C22—C23119.26 (18)
N4—C8—C11116.83 (14)C21—C22—H22120.4
N4—C8—C9108.11 (12)C23—C22—H22120.4
C11—C8—C9101.84 (12)C24—C23—C22120.37 (17)
N4—C8—C1106.18 (12)C24—C23—H23119.8
C11—C8—C1115.78 (12)C22—C23—H23119.8
C9—C8—C1107.48 (13)C23—C24—C19122.21 (16)
O2—C9—N3126.81 (15)C23—C24—H24118.9
O2—C9—C8125.72 (14)C19—C24—H24118.9
C3—S1—C1—C217.34 (11)C2—C1—C8—C9−139.50 (13)
C3—S1—C1—C6141.23 (11)C6—C1—C8—C9101.38 (13)
C3—S1—C1—C8−100.62 (11)S1—C1—C8—C9−24.22 (14)
C3—N1—C2—O1−173.38 (15)C10—N3—C9—O2−177.34 (16)
C4—N1—C2—O118.2 (3)C10—N3—C9—C83.48 (18)
C3—N1—C2—C18.4 (2)N4—C8—C9—O252.9 (2)
C4—N1—C2—C1−159.95 (16)C11—C8—C9—O2176.57 (16)
C6—C1—C2—O137.6 (2)C1—C8—C9—O2−61.3 (2)
C8—C1—C2—O1−76.26 (19)N4—C8—C9—N3−127.87 (14)
S1—C1—C2—O1164.42 (14)C11—C8—C9—N3−4.24 (16)
C6—C1—C2—N1−144.15 (14)C1—C8—C9—N3117.90 (14)
C8—C1—C2—N1101.94 (15)C9—N3—C10—C15176.92 (16)
S1—C1—C2—N1−17.38 (15)C9—N3—C10—C11−1.15 (19)
C5—N2—C3—N1−1.89 (19)C15—C10—C11—C120.1 (2)
C5—N2—C3—S1175.10 (13)N3—C10—C11—C12178.33 (14)
C2—N1—C3—N2−176.64 (14)C15—C10—C11—C8179.98 (14)
C4—N1—C3—N2−5.6 (2)N3—C10—C11—C8−1.82 (18)
C2—N1—C3—S15.81 (19)N4—C8—C11—C12−59.1 (2)
C4—N1—C3—S1176.82 (11)C9—C8—C11—C12−176.61 (17)
C1—S1—C3—N2168.82 (16)C1—C8—C11—C1267.1 (2)
C1—S1—C3—N1−14.05 (12)N4—C8—C11—C10121.09 (14)
C2—N1—C4—C5178.86 (16)C9—C8—C11—C103.57 (16)
C3—N1—C4—C59.66 (16)C1—C8—C11—C10−112.67 (15)
C3—N2—C5—C48.22 (18)C10—C11—C12—C13−0.2 (2)
N1—C4—C5—N2−10.75 (16)C8—C11—C12—C13−179.98 (16)
C2—C1—C6—C19107.20 (16)C11—C12—C13—C140.0 (3)
C8—C1—C6—C19−135.39 (13)C12—C13—C14—C150.1 (3)
S1—C1—C6—C19−13.08 (17)N3—C10—C15—C14−177.82 (16)
C2—C1—C6—C7−125.40 (14)C11—C10—C15—C140.0 (2)
C8—C1—C6—C7−7.99 (15)C13—C14—C15—C10−0.2 (3)
S1—C1—C6—C7114.32 (12)N4—C7—C16—C175.22 (17)
C8—N4—C7—C16−158.43 (12)C6—C7—C16—C17−109.65 (16)
C18—N4—C7—C16−30.09 (16)C7—C16—C17—C1820.32 (18)
C8—N4—C7—C6−37.75 (15)C8—N4—C18—C17163.22 (14)
C18—N4—C7—C690.59 (14)C7—N4—C18—C1742.69 (16)
C19—C6—C7—N4156.75 (13)C16—C17—C18—N4−38.17 (17)
C1—C6—C7—N427.44 (16)C1—C6—C19—C2476.18 (19)
C19—C6—C7—C16−88.23 (17)C7—C6—C19—C24−46.8 (2)
C1—C6—C7—C16142.45 (14)C1—C6—C19—C20−104.47 (18)
C7—N4—C8—C11163.22 (13)C7—C6—C19—C20132.52 (16)
C18—N4—C8—C1143.02 (19)C24—C19—C20—C210.2 (2)
C7—N4—C8—C9−82.74 (14)C6—C19—C20—C21−179.17 (15)
C18—N4—C8—C9157.06 (14)C24—C19—C20—Cl1−179.45 (12)
C7—N4—C8—C132.35 (15)C6—C19—C20—Cl11.2 (2)
C18—N4—C8—C1−87.84 (16)C19—C20—C21—C22−0.4 (3)
C2—C1—C8—N4104.98 (14)Cl1—C20—C21—C22179.24 (13)
C6—C1—C8—N4−14.14 (15)C20—C21—C22—C230.6 (3)
S1—C1—C8—N4−139.74 (11)C21—C22—C23—C24−0.5 (3)
C2—C1—C8—C11−26.48 (18)C22—C23—C24—C190.3 (3)
C6—C1—C8—C11−145.59 (13)C20—C19—C24—C23−0.1 (2)
S1—C1—C8—C1188.80 (14)C6—C19—C24—C23179.24 (16)
D—H···AD—HH···AD···AD—H···A
N3—H1···N2i0.88 (2)2.10 (2)2.971 (2)170 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H1⋯N2i0.88 (2)2.10 (2)2.971 (2)170 (2)

Symmetry code: (i) .

  2 in total

1.  Two new brominated tyrosine derivatives from the sponge Druinella (= Psammaplysilla) purpurea.

Authors:  D M James; H B Kunze; D J Faulkner
Journal:  J Nat Prod       Date:  1991 Jul-Aug       Impact factor: 4.050

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total

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