Literature DB >> 21580669

2-Amino-4-methyl-pyridinium trifluoro-acetate: a monoclinic polymorph.

Mehrdad Pourayoubi, Maryam Toghraee, Arnold L Rheingold, James A Golen.   

Abstract

The title salt, C(6)H(9)N(2) (+)·C(2)F(3)O(2) (-), is a monoclinic polymorph of a previously reported structure [Hemamalini & Fun (2010). Acta Cryst. E66, o781-o782]. In the crystal structure, the cations and anions are linked by two different types of N-H⋯O hydrogen bonds, forming cation-anion pairs. These pairs are hydrogen bonded to neighbouring pairs via another N-H⋯O hydrogen bonds involving an H atom of the NH(2) group and one of the O atoms of the COO(-) group into a chain extended along the b axis.

Entities:  

Year:  2010        PMID: 21580669      PMCID: PMC2983996          DOI: 10.1107/S1600536810008408

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure and the triclinic polymorph of the title salt, see: Hemamalini & Fun (2010a ▶,b ▶).

Experimental

Crystal data

C6H9N2 +·C2F3O2 M = 222.17 Monoclinic, a = 8.5315 (7) Å b = 11.4901 (9) Å c = 9.7206 (8) Å β = 90.820 (1)° V = 952.79 (13) Å3 Z = 4 Mo Kα radiation μ = 0.15 mm−1 T = 100 K 0.30 × 0.20 × 0.10 mm

Data collection

Bruker SMART APEX diffractometer 10752 measured reflections 2197 independent reflections 1784 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.098 S = 1.06 2197 reflections 150 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.29 e Å−3 Δρmin = −0.23 e Å−3 Data collection: SMART (Bruker, 2005 ▶); cell refinement: SAINT (Bruker 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810008408/ng2740sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810008408/ng2740Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H9N2+·C2F3O2F(000) = 456
Mr = 222.17Dx = 1.549 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5265 reflections
a = 8.5315 (7) Åθ = 2.7–28.0°
b = 11.4901 (9) ŵ = 0.15 mm1
c = 9.7206 (8) ÅT = 100 K
β = 90.820 (1)°Block, colorless
V = 952.79 (13) Å30.30 × 0.20 × 0.10 mm
Z = 4
Bruker SMART APEX diffractometer1784 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.036
graphiteθmax = 28.2°, θmin = 2.4°
φ and ω scansh = −5→11
10752 measured reflectionsk = −14→14
2197 independent reflectionsl = −12→12
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.098w = 1/[σ2(Fo2) + (0.0474P)2 + 0.2454P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.001
2197 reflectionsΔρmax = 0.29 e Å3
150 parametersΔρmin = −0.23 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0084 (16)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.16929 (11)0.27679 (7)1.06142 (10)0.0350 (2)
F20.08357 (10)0.40806 (8)0.92121 (10)0.0358 (2)
F30.25375 (10)0.45302 (7)1.07851 (9)0.0316 (2)
O10.36035 (11)0.23798 (8)0.85540 (11)0.0259 (2)
O20.41240 (11)0.42938 (8)0.83832 (10)0.0257 (2)
N10.61429 (13)0.37742 (9)0.62595 (12)0.0212 (2)
H1B0.544 (2)0.3930 (17)0.699 (2)0.048 (5)*
N20.56684 (13)0.18015 (10)0.63958 (12)0.0223 (3)
H2C0.504 (2)0.1964 (16)0.711 (2)0.040 (5)*
H2B0.588 (2)0.1040 (16)0.6158 (18)0.034 (5)*
C10.68436 (16)0.47274 (12)0.56989 (15)0.0251 (3)
H1A0.66180.54800.60490.030*
C20.78596 (16)0.46100 (12)0.46475 (15)0.0250 (3)
H2A0.83410.52770.42610.030*
C30.81986 (15)0.34848 (12)0.41287 (14)0.0214 (3)
C40.74763 (14)0.25417 (11)0.47012 (13)0.0206 (3)
H4A0.76890.17840.43590.025*
C50.64122 (14)0.26797 (11)0.58005 (14)0.0196 (3)
C60.93335 (16)0.33574 (13)0.29694 (15)0.0260 (3)
H6A0.92870.25600.26120.039*
H6B1.03980.35230.33070.039*
H6C0.90550.39050.22330.039*
C70.34308 (14)0.34184 (11)0.88424 (14)0.0200 (3)
C80.21258 (15)0.36940 (11)0.98849 (15)0.0236 (3)
U11U22U33U12U13U23
F10.0412 (5)0.0257 (5)0.0385 (5)−0.0036 (4)0.0209 (4)0.0027 (4)
F20.0220 (4)0.0367 (5)0.0488 (6)0.0070 (3)0.0017 (4)−0.0026 (4)
F30.0328 (5)0.0271 (5)0.0350 (5)−0.0012 (3)0.0096 (4)−0.0114 (4)
O10.0294 (5)0.0168 (5)0.0319 (6)−0.0008 (4)0.0099 (4)−0.0027 (4)
O20.0292 (5)0.0179 (5)0.0303 (6)−0.0033 (4)0.0105 (4)0.0005 (4)
N10.0223 (5)0.0177 (5)0.0237 (6)0.0006 (4)0.0044 (4)−0.0015 (5)
N20.0250 (6)0.0168 (6)0.0253 (6)−0.0007 (4)0.0073 (5)−0.0007 (5)
C10.0272 (7)0.0168 (6)0.0314 (8)−0.0007 (5)0.0026 (6)−0.0014 (5)
C20.0250 (7)0.0200 (7)0.0302 (8)−0.0033 (5)0.0032 (5)0.0040 (5)
C30.0181 (6)0.0239 (7)0.0223 (7)−0.0005 (5)0.0013 (5)0.0008 (5)
C40.0206 (6)0.0187 (6)0.0224 (7)0.0006 (5)0.0019 (5)−0.0010 (5)
C50.0185 (6)0.0181 (6)0.0221 (6)0.0003 (4)−0.0005 (5)−0.0005 (5)
C60.0236 (7)0.0298 (7)0.0247 (7)−0.0021 (5)0.0052 (5)0.0023 (6)
C70.0200 (6)0.0185 (6)0.0217 (7)−0.0005 (5)0.0022 (5)−0.0010 (5)
C80.0227 (6)0.0182 (6)0.0299 (7)−0.0008 (5)0.0060 (5)−0.0015 (5)
F1—C81.3337 (15)C1—H1A0.9500
F2—C81.3475 (16)C2—C31.4190 (19)
F3—C81.3429 (16)C2—H2A0.9500
O1—C71.2352 (15)C3—C41.3688 (18)
O2—C71.2523 (15)C3—C61.5033 (18)
N1—C51.3552 (16)C4—C51.4209 (17)
N1—C11.3650 (17)C4—H4A0.9500
N1—H1B0.952 (19)C6—H6A0.9800
N2—C51.3290 (16)C6—H6B0.9800
N2—H2C0.901 (18)C6—H6C0.9800
N2—H2B0.923 (18)C7—C81.5490 (18)
C1—C21.356 (2)
C5—N1—C1122.40 (12)N2—C5—N1118.49 (12)
C5—N1—H1B122.1 (12)N2—C5—C4123.85 (12)
C1—N1—H1B115.5 (12)N1—C5—C4117.67 (12)
C5—N2—H2C118.0 (12)C3—C6—H6A109.5
C5—N2—H2B121.1 (11)C3—C6—H6B109.5
H2C—N2—H2B120.5 (16)H6A—C6—H6B109.5
C2—C1—N1120.62 (12)C3—C6—H6C109.5
C2—C1—H1A119.7H6A—C6—H6C109.5
N1—C1—H1A119.7H6B—C6—H6C109.5
C1—C2—C3119.61 (12)O1—C7—O2129.54 (12)
C1—C2—H2A120.2O1—C7—C8115.80 (11)
C3—C2—H2A120.2O2—C7—C8114.62 (11)
C4—C3—C2118.79 (12)F1—C8—F3107.24 (12)
C4—C3—C6121.75 (12)F1—C8—F2106.89 (11)
C2—C3—C6119.46 (12)F3—C8—F2106.54 (10)
C3—C4—C5120.90 (12)F1—C8—C7113.06 (11)
C3—C4—H4A119.5F3—C8—C7112.88 (11)
C5—C4—H4A119.5F2—C8—C7109.85 (11)
C5—N1—C1—C2−0.3 (2)C3—C4—C5—N2179.68 (13)
N1—C1—C2—C3−0.1 (2)C3—C4—C5—N1−0.10 (19)
C1—C2—C3—C40.5 (2)O1—C7—C8—F118.42 (18)
C1—C2—C3—C6−179.60 (13)O2—C7—C8—F1−163.72 (12)
C2—C3—C4—C5−0.37 (19)O1—C7—C8—F3140.38 (12)
C6—C3—C4—C5179.73 (12)O2—C7—C8—F3−41.76 (17)
C1—N1—C5—N2−179.33 (12)O1—C7—C8—F2−100.87 (14)
C1—N1—C5—C40.46 (19)O2—C7—C8—F276.99 (14)
D—H···AD—HH···AD···AD—H···A
N1—H1B···O20.952 (19)1.82 (2)2.7724 (14)177.4 (18)
N2—H2C···O10.901 (18)1.938 (19)2.8376 (15)176.3 (17)
N2—H2B···O2i0.923 (18)2.055 (18)2.8946 (15)150.5 (15)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1B⋯O20.952 (19)1.82 (2)2.7724 (14)177.4 (18)
N2—H2C⋯O10.901 (18)1.938 (19)2.8376 (15)176.3 (17)
N2—H2B⋯O2i0.923 (18)2.055 (18)2.8946 (15)150.5 (15)

Symmetry code: (i) .

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