Literature DB >> 21580646

2-Methyl-benzimidazolium nitrate.

Qingshuang Ma, Wenzeng Duan, Yudao Ma, Xiao Liu, Bo Qu.   

Abstract

In the title compound, C(8)H(9)N(2) (+)·NO(3) (-), inter-molecular N-H⋯O hydrogen bonds join the mol-ecules into a chain extending along the b axis.

Entities:  

Year:  2010        PMID: 21580646      PMCID: PMC2984038          DOI: 10.1107/S1600536810008615

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the applications of related benzimidazole compounds, see: Wright (1951 ▶); El-masry et al. (2000 ▶); Gümüş et al. (2003 ▶).

Experimental

Crystal data

C8H9N2 +·NO3 M = 195.18 Monoclinic, a = 7.711 (4) Å b = 15.127 (7) Å c = 8.270 (4) Å β = 99.398 (7)° V = 951.7 (8) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 298 K 0.18 × 0.16 × 0.12 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.981, T max = 0.987 4774 measured reflections 1685 independent reflections 1319 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.135 S = 1.07 1685 reflections 128 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810008615/gk2255sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810008615/gk2255Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H9N2+·NO3F(000) = 408
Mr = 195.18Dx = 1.362 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2174 reflections
a = 7.711 (4) Åθ = 2.5–25.5°
b = 15.127 (7) ŵ = 0.11 mm1
c = 8.270 (4) ÅT = 298 K
β = 99.398 (7)°Block, colorless
V = 951.7 (8) Å30.18 × 0.16 × 0.12 mm
Z = 4
Bruker SMART APEX diffractometer1685 independent reflections
Radiation source: fine-focus sealed tube1319 reflections with I > 2σ(I)
graphiteRint = 0.027
φ and ω scansθmax = 25.1°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −9→9
Tmin = 0.981, Tmax = 0.987k = −11→18
4774 measured reflectionsl = −9→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.135H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0681P)2 + 0.208P] where P = (Fo2 + 2Fc2)/3
1685 reflections(Δ/σ)max < 0.001
128 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.3641 (2)0.06287 (10)0.78462 (18)0.0735 (5)
O20.33057 (19)0.15524 (9)0.97555 (17)0.0643 (4)
O30.2248 (3)0.02349 (11)0.9773 (2)0.0915 (6)
N10.3063 (2)0.07987 (10)0.9136 (2)0.0538 (4)
N20.6679 (2)0.12445 (11)0.25067 (19)0.0600 (5)
H20.68280.06870.23740.072*
N30.5577 (2)0.24731 (11)0.31726 (19)0.0576 (5)
H30.48890.28420.35420.069*
C10.3941 (3)0.11166 (15)0.3743 (3)0.0727 (6)
H1A0.39210.05160.33680.109*
H1B0.28390.13950.33310.109*
H1C0.41320.11260.49200.109*
C20.5376 (3)0.15990 (13)0.3145 (2)0.0569 (5)
C30.7769 (3)0.19049 (13)0.2083 (2)0.0561 (5)
C40.7057 (3)0.26993 (13)0.2519 (2)0.0542 (5)
C50.7834 (3)0.35057 (14)0.2303 (3)0.0677 (6)
H50.73560.40350.25950.081*
C60.9355 (3)0.34816 (19)0.1630 (3)0.0805 (7)
H60.99200.40090.14630.097*
C71.0070 (3)0.2684 (2)0.1191 (3)0.0802 (7)
H71.10950.26950.07340.096*
C80.9302 (3)0.18829 (18)0.1416 (3)0.0715 (7)
H80.97870.13530.11340.086*
U11U22U33U12U13U23
O10.1006 (12)0.0560 (9)0.0718 (10)0.0061 (8)0.0370 (9)−0.0048 (7)
O20.0865 (10)0.0434 (8)0.0651 (9)−0.0085 (7)0.0188 (7)−0.0067 (6)
O30.1307 (16)0.0554 (10)0.0990 (13)−0.0287 (10)0.0499 (12)0.0017 (8)
N10.0628 (10)0.0406 (9)0.0590 (10)0.0020 (7)0.0127 (8)0.0042 (7)
N20.0735 (11)0.0464 (9)0.0564 (10)0.0153 (8)−0.0006 (8)−0.0086 (7)
N30.0710 (11)0.0476 (10)0.0521 (9)0.0150 (8)0.0038 (8)−0.0094 (7)
C10.0902 (16)0.0612 (14)0.0673 (13)0.0017 (12)0.0145 (12)−0.0006 (11)
C20.0728 (13)0.0487 (12)0.0462 (10)0.0126 (10)0.0004 (9)−0.0052 (8)
C30.0621 (12)0.0575 (12)0.0440 (10)0.0131 (10)−0.0051 (8)−0.0086 (9)
C40.0619 (11)0.0536 (11)0.0433 (10)0.0096 (9)−0.0024 (8)−0.0058 (8)
C50.0810 (15)0.0539 (13)0.0631 (13)0.0037 (11)−0.0033 (11)−0.0019 (10)
C60.0806 (16)0.0842 (18)0.0716 (15)−0.0133 (14)−0.0030 (12)0.0061 (13)
C70.0679 (14)0.105 (2)0.0662 (14)0.0061 (14)0.0070 (11)−0.0032 (14)
C80.0685 (14)0.0831 (17)0.0593 (13)0.0169 (13)−0.0007 (11)−0.0124 (11)
O1—N11.248 (2)C1—H1C0.9600
O2—N11.252 (2)C3—C81.384 (3)
O3—N11.228 (2)C3—C41.393 (3)
N2—C21.322 (3)C4—C51.383 (3)
N2—C31.387 (3)C5—C61.378 (4)
N2—H20.8600C5—H50.9300
N3—C21.331 (3)C6—C71.399 (4)
N3—C41.383 (3)C6—H60.9300
N3—H30.8600C7—C81.374 (4)
C1—C21.476 (3)C7—H70.9300
C1—H1A0.9600C8—H80.9300
C1—H1B0.9600
O3—N1—O1120.19 (17)C8—C3—N2132.5 (2)
O3—N1—O2120.66 (17)C8—C3—C4121.5 (2)
O1—N1—O2119.14 (16)N2—C3—C4105.96 (18)
C2—N2—C3109.90 (17)C5—C4—N3132.13 (19)
C2—N2—H2125.1C5—C4—C3122.0 (2)
C3—N2—H2125.1N3—C4—C3105.85 (18)
C2—N3—C4109.90 (16)C6—C5—C4116.3 (2)
C2—N3—H3125.1C6—C5—H5121.8
C4—N3—H3125.1C4—C5—H5121.8
C2—C1—H1A109.5C5—C6—C7121.7 (2)
C2—C1—H1B109.5C5—C6—H6119.2
H1A—C1—H1B109.5C7—C6—H6119.2
C2—C1—H1C109.5C8—C7—C6121.9 (2)
H1A—C1—H1C109.5C8—C7—H7119.1
H1B—C1—H1C109.5C6—C7—H7119.1
N2—C2—N3108.40 (19)C7—C8—C3116.6 (2)
N2—C2—C1126.37 (19)C7—C8—H8121.7
N3—C2—C1125.23 (19)C3—C8—H8121.7
C3—N2—C2—N3−0.6 (2)C8—C3—C4—N3−178.53 (17)
C3—N2—C2—C1179.86 (19)N2—C3—C4—N3−0.24 (19)
C4—N3—C2—N20.4 (2)N3—C4—C5—C6178.52 (19)
C4—N3—C2—C1179.99 (19)C3—C4—C5—C60.0 (3)
C2—N2—C3—C8178.5 (2)C4—C5—C6—C70.0 (3)
C2—N2—C3—C40.5 (2)C5—C6—C7—C8−0.4 (4)
C2—N3—C4—C5−178.8 (2)C6—C7—C8—C30.7 (3)
C2—N3—C4—C3−0.1 (2)N2—C3—C8—C7−178.4 (2)
C8—C3—C4—C50.3 (3)C4—C3—C8—C7−0.7 (3)
N2—C3—C4—C5178.59 (17)
D—H···AD—HH···AD···AD—H···A
N2—H2···O1i0.862.032.855 (3)162
N3—H3···O2ii0.861.932.775 (2)166
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O1i0.862.032.855 (3)162
N3—H3⋯O2ii0.861.932.775 (2)166

Symmetry codes: (i) ; (ii) .

  3 in total

1.  The chemistry of the benzimidazoles.

Authors:  J B WRIGHT
Journal:  Chem Rev       Date:  1951-06       Impact factor: 60.622

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis, cytotoxic activity on MCF-7 cell line and mutagenic activity of platinum(II) complexes with 2-substituted benzimidazole ligands.

Authors:  Fatma Gümüş; Oztekin Algül; Gökçen Eren; Hatice Eroğlu; Nuran Diril; Sibel Gür; Aykut Ozkul
Journal:  Eur J Med Chem       Date:  2003-05       Impact factor: 6.514

  3 in total

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