Literature DB >> 21580644

2-(1,3-Thia-zol-4-yl)benzimidazolium nitrate monohydrate.

Marcos Flores-Alamo1, Sandra González-Martínez, Silvia E Castillo-Blum.   

Abstract

In the title compound, C(10)H(8)N(3)S(+)·NO(3) (-)·n class="Chemical">H(2)O, one of the N atoms of the benzimidazole unit is protonated, unlike than that in the thia-zole group. This protonation leads to equalization of the bond angles at the two N atoms of the benzimidazole group. The benzimidazole and thia-zole systems are almost coplanar, forming a dihedral angle of 0.5 (2)°. In the crystal, the nitrate anion and water mol-ecule bridge the thia-bendazolium cations through N-H⋯O and O-H⋯O hydrogen bonds, leading to a supra-molecular network based on an infinite one-dimensional chain using [001] as base vector.

Entities:  

Year:  2010        PMID: 21580644      PMCID: PMC2984023          DOI: 10.1107/S1600536810008433

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the anti­viral action and anthelmintic activity of substituted benzimidazoles, see: Goodgame et al. (1985 ▶). Related structures have been reported: thia­bendazole (Trus & Marsh, 1973 ▶); thia­bendazolium n class="Chemical">nitrate (Murugesan et al., 1998 ▶; Devereux et al., 2004 ▶); thia­bendazolium perchlorate (Stanley et al., 2002 ▶); thia­bendazolium halide dihydrates (Prabakaran et al., 2000 ▶). For structures of transition metal complexes bearing thia­bendazole as ligand, see: Kowala & Wunderlich (1973 ▶); Udupa & Krebs (1979 ▶); Rong et al. (1991 ▶).

Experimental

Crystal data

C10H8N3S+·NO3 −·H2O M = 282.28 Monoclinic, a = 7.6140 (3) Å b = 16.3130 (5) Å c = 10.0990 (3) Å β = 102.731 (4)° V = 1223.53 (7) Å3 Z = 4 Mo Kα radiation μ = 0.28 mm−1 T = 298 K 0.54 × 0.39 × 0.26 mm

Data collection

Oxford Diffraction Xcalibur diffractometer with an Atlas (Gemini Mo) detector Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009 ▶) T min = 0.920, T max = 0.952 5590 measured reflections 2426 independent reflections 1859 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.100 S = 1.08 2426 reflections 184 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.23 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis n class="Disease">RED (Oxford Diffraction, 2009 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810008433/bh2274sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810008433/bh2274Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H8N3S+·NO3·H2OF(000) = 584
Mr = 282.28Dx = 1.532 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3277 reflections
a = 7.6140 (3) Åθ = 3.2–26.0°
b = 16.3130 (5) ŵ = 0.28 mm1
c = 10.0990 (3) ÅT = 298 K
β = 102.731 (4)°Prism, pale yellow
V = 1223.53 (7) Å30.54 × 0.39 × 0.26 mm
Z = 4
Oxford Diffraction Xcalibur diffractometer with an Atlas (Gemini Mo) detector2426 independent reflections
Radiation source: X-ray1859 reflections with I > 2σ(I)
graphiteRint = 0.017
Detector resolution: 10.4685 pixels mm-1θmax = 26.1°, θmin = 3.2°
ω scansh = −9→7
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2009)k = −19→20
Tmin = 0.920, Tmax = 0.952l = −12→10
5590 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.100H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0565P)2 + 0.057P] where P = (Fo2 + 2Fc2)/3
2426 reflections(Δ/σ)max < 0.001
184 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.21 e Å3
0 constraints
xyzUiso*/Ueq
C20.7417 (2)−0.01688 (10)0.01259 (16)0.0385 (4)
C40.8456 (2)0.11013 (10)0.02130 (18)0.0416 (4)
C50.8891 (3)0.18937 (11)−0.0082 (2)0.0542 (5)
H50.85780.2102−0.0960.065*
C60.9813 (3)0.23603 (12)0.0988 (2)0.0606 (5)
H61.01320.28970.0840.073*
C71.0266 (2)0.20260 (12)0.2293 (2)0.0576 (5)
H71.09230.23460.29920.069*
C80.9784 (2)0.12463 (12)0.25917 (19)0.0517 (5)
H81.00620.10420.34730.062*
C90.8865 (2)0.07819 (10)0.15118 (16)0.0416 (4)
C100.6544 (2)−0.09278 (9)−0.03838 (16)0.0387 (4)
C110.5761 (2)−0.10865 (11)−0.17031 (17)0.0467 (4)
H110.5695−0.0718−0.24150.056*
C130.5667 (3)−0.21780 (11)−0.01579 (18)0.0507 (4)
H130.5495−0.26670.0270.061*
N10.81909 (19)−0.00164 (8)0.14122 (14)0.0403 (3)
N30.7559 (2)0.04857 (9)−0.06229 (15)0.0434 (4)
N140.6484 (2)−0.15582 (9)0.05111 (15)0.0487 (4)
N150.6705 (2)0.07673 (9)0.58671 (15)0.0502 (4)
O1W0.2195 (2)0.07887 (10)0.62504 (15)0.0621 (4)
O160.7817 (3)0.02340 (12)0.61835 (19)0.1061 (7)
O170.6049 (2)0.10779 (9)0.67836 (14)0.0724 (4)
O180.6223 (3)0.09795 (10)0.47009 (14)0.0989 (6)
S120.49270 (6)−0.20485 (3)−0.18646 (4)0.05076 (18)
H2D0.329 (3)0.0937 (14)0.647 (2)0.076*
H1D0.205 (3)0.0427 (15)0.574 (2)0.076*
H1N0.814 (3)−0.0313 (12)0.210 (2)0.061*
H3N0.722 (3)0.0536 (13)−0.145 (2)0.061*
U11U22U33U12U13U23
C20.0382 (9)0.0415 (9)0.0363 (9)0.0061 (7)0.0094 (7)0.0024 (7)
C40.0385 (9)0.0433 (9)0.0447 (9)−0.0003 (7)0.0131 (7)0.0001 (7)
C50.0536 (11)0.0513 (11)0.0609 (12)−0.0058 (8)0.0193 (10)0.0072 (9)
C60.0486 (11)0.0507 (11)0.0877 (16)−0.0080 (9)0.0261 (11)−0.0116 (11)
C70.0421 (10)0.0577 (12)0.0726 (13)−0.0018 (8)0.0119 (9)−0.0247 (10)
C80.0462 (10)0.0564 (11)0.0496 (10)0.0067 (8)0.0041 (8)−0.0116 (9)
C90.0379 (9)0.0435 (9)0.0437 (9)0.0060 (7)0.0100 (7)−0.0020 (8)
C100.0369 (9)0.0413 (9)0.0385 (9)0.0043 (7)0.0098 (7)0.0007 (7)
C110.0543 (11)0.0477 (10)0.0371 (9)0.0004 (8)0.0080 (8)0.0035 (7)
C130.0614 (11)0.0457 (10)0.0452 (10)−0.0069 (8)0.0124 (9)0.0037 (8)
N10.0464 (8)0.0403 (8)0.0337 (7)0.0064 (6)0.0076 (6)0.0026 (6)
N30.0473 (9)0.0488 (8)0.0340 (7)−0.0021 (6)0.0086 (7)0.0057 (7)
N140.0591 (9)0.0464 (8)0.0390 (8)−0.0046 (7)0.0070 (7)0.0044 (7)
N150.0613 (10)0.0447 (8)0.0414 (8)0.0024 (7)0.0044 (7)0.0033 (7)
O1W0.0733 (10)0.0623 (9)0.0512 (8)0.0057 (8)0.0149 (8)0.0038 (6)
O160.1230 (16)0.1025 (14)0.0874 (12)0.0633 (12)0.0118 (11)0.0130 (10)
O170.0828 (11)0.0859 (11)0.0469 (8)0.0184 (8)0.0104 (7)−0.0106 (7)
O180.1616 (18)0.0918 (12)0.0357 (8)0.0366 (11)0.0057 (10)0.0079 (7)
S120.0541 (3)0.0533 (3)0.0437 (3)−0.0063 (2)0.0082 (2)−0.0065 (2)
N1—C21.326 (2)C8—C91.385 (2)
N1—C91.395 (2)C8—H80.93
N3—C21.327 (2)C10—C111.359 (2)
N3—C41.390 (2)C11—S121.6874 (18)
N14—C101.376 (2)C11—H110.93
N14—C131.296 (2)C13—S121.7045 (19)
C2—C101.445 (2)C13—H130.93
C4—C91.382 (2)N1—H1N0.85 (2)
C4—C51.383 (2)N3—H3N0.82 (2)
C5—C61.380 (3)N15—O181.205 (2)
C5—H50.93N15—O161.207 (2)
C6—C71.398 (3)N15—O171.2516 (19)
C6—H60.93O1W—H2D0.85 (2)
C7—C81.375 (3)O1W—H1D0.78 (2)
C7—H70.93
C2—N1—C9108.82 (13)C7—C8—H8121.7
C2—N1—H1N126.9 (14)C9—C8—H8121.7
C9—N1—H1N123.4 (13)C4—C9—C8120.69 (16)
C2—N3—C4109.03 (14)C4—C9—N1106.34 (14)
C2—N3—H3N127.8 (15)C8—C9—N1132.97 (16)
C4—N3—H3N123.2 (15)C11—C10—N14115.50 (15)
N1—C2—N3109.45 (15)C11—C10—C2125.47 (15)
N1—C2—C10125.43 (14)N14—C10—C2119.03 (14)
N3—C2—C10125.13 (15)C10—C11—S12110.26 (13)
C9—C4—C5122.87 (17)C10—C11—H11124.9
C9—C4—N3106.36 (14)S12—C11—H11124.9
C5—C4—N3130.76 (16)N14—C13—S12116.36 (14)
C6—C5—C4116.81 (19)N14—C13—H13121.8
C6—C5—H5121.6S12—C13—H13121.8
C4—C5—H5121.6C13—N14—C10108.79 (15)
C5—C6—C7120.04 (18)O18—N15—O16120.71 (18)
C5—C6—H6120O18—N15—O17121.43 (17)
C7—C6—H6120O16—N15—O17117.84 (16)
C8—C7—C6123.02 (19)O18—N15—O17121.43 (17)
C8—C7—H7118.5O16—N15—O17117.84 (16)
C6—C7—H7118.5H2D—O1W—H1D112 (2)
C7—C8—C9116.52 (18)C11—S12—C1389.08 (8)
C9—C4—C5—C61.6 (3)N14—C10—C11—S12−0.39 (19)
N3—C4—C5—C6−179.56 (17)C2—C10—C11—S12179.16 (13)
C4—C5—C6—C70.2 (3)N3—C2—N1—C90.41 (18)
C5—C6—C7—C8−2.2 (3)C10—C2—N1—C9−179.28 (14)
C6—C7—C8—C92.3 (3)C4—C9—N1—C2−0.09 (17)
C5—C4—C9—C8−1.5 (3)C8—C9—N1—C2−179.72 (17)
N3—C4—C9—C8179.44 (14)N1—C2—N3—C4−0.58 (18)
C5—C4—C9—N1178.82 (15)C10—C2—N3—C4179.11 (14)
N3—C4—C9—N1−0.25 (17)C9—C4—N3—C20.51 (18)
C7—C8—C9—C4−0.5 (2)C5—C4—N3—C2−178.47 (18)
C7—C8—C9—N1179.10 (16)S12—C13—N14—C10−0.2 (2)
N1—C2—C10—C11−179.51 (16)C11—C10—N14—C130.4 (2)
N3—C2—C10—C110.8 (3)C2—C10—N14—C13−179.21 (15)
N1—C2—C10—N140.0 (2)C10—C11—S12—C130.22 (14)
N3—C2—C10—N14−179.62 (15)N14—C13—S12—C11−0.01 (15)
D—H···AD—HH···AD···AD—H···A
O1W—H2D···O170.85 (2)2.06 (2)2.903 (2)168 (2)
O1W—H1D···O16i0.78 (2)2.24 (3)2.969 (2)156 (2)
N1—H1N···O1Wi0.85 (2)1.91 (2)2.748 (2)168.5 (18)
N3—H3N···O16ii0.82 (2)2.58 (2)3.300 (2)147.5 (18)
N3—H3N···O17ii0.82 (2)2.02 (2)2.791 (2)157 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H2D⋯O170.85 (2)2.06 (2)2.903 (2)168 (2)
O1W—H1D⋯O16i0.78 (2)2.24 (3)2.969 (2)156 (2)
N1—H1N⋯O1Wi0.85 (2)1.91 (2)2.748 (2)168.5 (18)
N3—H3N⋯O16ii0.82 (2)2.58 (2)3.300 (2)147.5 (18)
N3—H3N⋯O17ii0.82 (2)2.02 (2)2.791 (2)157 (2)

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, antimicrobial activity and chemotherapeutic potential of inorganic derivatives of 2-(4'-thiazolyl)benzimidazole[thiabendazole]: X-ray crystal structures of [Cu(TBZH)2Cl]Cl.H2O.EtOH and TBZH2NO3 (TBZH=thiabendazole).

Authors:  Michael Devereux; Malachy McCann; Denis O Shea; Rachel Kelly; Denise Egan; Carol Deegan; Kevin Kavanagh; Vickie McKee; Gregory Finn
Journal:  J Inorg Biochem       Date:  2004-06       Impact factor: 4.155

  2 in total
  3 in total

1.  4-Acetamido-anilinium nitrate monohydrate.

Authors:  Sana Riahi; Mohamed Lahbib Mrad; Valeria Ferretti; Frederic Lefebvre; Cherif Ben Nasr
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-05

2.  Thiabendazole and Thiabendazole-Formic Acid Solvate: A Computational, Crystallographic, Spectroscopic and Thermal Study.

Authors:  Andreia M M Tabanez; Bernardo A Nogueira; Alberto Milani; M Ermelinda S Eusébio; José A Paixão; Hayrunnisa Nur Kabuk; Maria Jajuga; Gulce O Ildiz; Rui Fausto
Journal:  Molecules       Date:  2020-07-06       Impact factor: 4.411

3.  Chloridobis[2-(1,3-thia-zol-4-yl-κN)-1H-benzimidazole-κN(3)]cobalt(II) chloride dihydrate.

Authors:  Zhan-Wang Shi; Yan Qin; Yan-Xia Lin; Wei Wu; Peng Liang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-10
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.