Literature DB >> 21580638

2-(4-Chloro-phen-yl)-3-methyl-sulfanyl-5-phenyl-1-benzofuran.

Hong Dae Choi, Pil Ja Seo, Byeng Wha Son, Uk Lee.   

Abstract

In the title compound, C(21)H(15)ClOS, the 4-chloro-phenyl ring is rotated out of the benzofuran plane, making a dihedral angle of 21.50 (6)°. The dihedral angle between the 5-phenyl ring and the benzofuran plane is 29.39 (6)°. The crystal studied was an inversion twin with a 0.65 (7):0.35 (6) domain ratio.

Entities:  

Year:  2010        PMID: 21580638      PMCID: PMC2983985          DOI: 10.1107/S1600536810008706

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of similar benzofuran derivatives, see: Choi, et al. (2009 ▶, 2010 ▶). For the pharmacological activity of benzofuran compounds, see: Aslam et al. (2006 ▶); Galal et al. (2009 ▶); Khan et al. (2005 ▶). For natural products with benzofuran rings, see: Akgul & Anil (2003 ▶); Soekamto et al. (2003 ▶).

Experimental

Crystal data

C21H15ClOS M = 350.84 Monoclinic, a = 10.921 (1) Å b = 7.2225 (8) Å c = 11.740 (1) Å β = 115.132 (6)° V = 838.35 (14) Å3 Z = 2 Mo Kα radiation μ = 0.36 mm−1 T = 173 K 0.27 × 0.15 × 0.14 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.911, T max = 0.951 7754 measured reflections 3571 independent reflections 3376 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.093 S = 1.05 3571 reflections 219 parameters 1 restraint H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.23 e Å−3 Absolute structure: Flack (1983 ▶), 1505 Friedel pairs Flack parameter: 0.35 (6) Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810008706/fl2295sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810008706/fl2295Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H15ClOSF(000) = 364
Mr = 350.84Dx = 1.390 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 4886 reflections
a = 10.921 (1) Åθ = 3.4–27.4°
b = 7.2225 (8) ŵ = 0.36 mm1
c = 11.740 (1) ÅT = 173 K
β = 115.132 (6)°Block, colourless
V = 838.35 (14) Å30.27 × 0.15 × 0.14 mm
Z = 2
Bruker SMART APEXII CCD diffractometer3571 independent reflections
Radiation source: Rotating Anode3376 reflections with I > 2σ(I)
Bruker HELIOS graded multilayer opticsRint = 0.031
Detector resolution: 10.0 pixels mm-1θmax = 27.4°, θmin = 1.9°
φ and ω scansh = −14→13
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −9→8
Tmin = 0.911, Tmax = 0.951l = −15→15
7754 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035H-atom parameters constrained
wR(F2) = 0.093w = 1/[σ2(Fo2) + (0.051P)2 + 0.0803P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
3571 reflectionsΔρmax = 0.28 e Å3
219 parametersΔρmin = −0.23 e Å3
1 restraintAbsolute structure: Flack (1983), 1505 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.35 (6)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl−0.26159 (5)0.53997 (9)−0.01679 (5)0.04418 (14)
S0.45654 (5)0.50246 (9)0.13481 (4)0.04300 (16)
O0.37078 (12)0.5417 (2)0.43085 (10)0.0297 (3)
C10.44798 (18)0.5179 (3)0.28020 (15)0.0289 (4)
C20.56317 (17)0.5235 (3)0.40109 (15)0.0267 (3)
C30.70372 (18)0.5202 (3)0.44147 (15)0.0276 (4)
H30.74120.50780.38220.033*
C40.78803 (17)0.5353 (3)0.56955 (15)0.0270 (3)
C50.72841 (19)0.5488 (3)0.65544 (16)0.0311 (4)
H50.78590.55650.74280.037*
C60.58971 (19)0.5512 (3)0.61716 (16)0.0321 (4)
H60.55130.56070.67590.039*
C70.51007 (18)0.5391 (3)0.48929 (15)0.0287 (3)
C80.33570 (18)0.5302 (3)0.30249 (15)0.0286 (4)
C90.19012 (18)0.5351 (3)0.22349 (15)0.0281 (3)
C100.1017 (2)0.6099 (3)0.26900 (18)0.0297 (4)
H100.13720.65840.35200.036*
C11−0.0366 (2)0.6149 (3)0.19605 (19)0.0329 (4)
H11−0.09550.66720.22810.039*
C12−0.08758 (18)0.5422 (3)0.07541 (16)0.0304 (4)
C13−0.0032 (2)0.4675 (3)0.02688 (17)0.0335 (4)
H13−0.03990.4188−0.05610.040*
C140.1356 (2)0.4641 (3)0.10026 (18)0.0325 (4)
H140.19390.41350.06700.039*
C150.93761 (17)0.5412 (3)0.61447 (15)0.0271 (3)
C161.0017 (2)0.4543 (3)0.54744 (18)0.0316 (4)
H160.94920.38510.47390.038*
C171.1406 (2)0.4677 (3)0.58677 (19)0.0364 (4)
H171.18210.40850.53990.044*
C181.2186 (2)0.5668 (3)0.6939 (2)0.0413 (5)
H181.31340.57810.71980.050*
C191.1582 (2)0.6494 (3)0.7630 (2)0.0416 (5)
H191.21190.71520.83770.050*
C201.0191 (2)0.6369 (3)0.72411 (19)0.0337 (4)
H200.97890.69410.77270.040*
C210.5393 (3)0.7197 (4)0.1356 (2)0.0511 (6)
H21A0.63270.71600.20040.077*
H21B0.49060.82110.15380.077*
H21C0.53940.73980.05310.077*
U11U22U33U12U13U23
Cl0.0278 (2)0.0580 (3)0.0424 (3)0.0004 (3)0.0107 (2)0.0047 (3)
S0.0401 (3)0.0664 (4)0.0278 (2)−0.0108 (3)0.0195 (2)−0.0125 (2)
O0.0273 (6)0.0387 (7)0.0259 (5)−0.0008 (7)0.0140 (5)−0.0006 (6)
C10.0306 (9)0.0330 (10)0.0255 (7)−0.0046 (8)0.0142 (7)−0.0049 (8)
C20.0298 (8)0.0270 (9)0.0251 (7)−0.0008 (8)0.0133 (7)−0.0007 (8)
C30.0325 (9)0.0265 (9)0.0270 (7)−0.0005 (8)0.0158 (7)0.0003 (8)
C40.0302 (8)0.0237 (8)0.0280 (8)0.0014 (8)0.0132 (7)−0.0003 (8)
C50.0348 (9)0.0347 (9)0.0232 (7)0.0019 (9)0.0116 (7)0.0025 (8)
C60.0352 (9)0.0388 (10)0.0273 (8)0.0014 (9)0.0178 (7)0.0003 (9)
C70.0297 (8)0.0301 (9)0.0289 (8)−0.0003 (9)0.0150 (7)0.0007 (9)
C80.0337 (9)0.0278 (8)0.0253 (7)−0.0021 (9)0.0134 (7)−0.0033 (8)
C90.0307 (8)0.0243 (8)0.0305 (8)−0.0030 (9)0.0143 (7)−0.0003 (8)
C100.0329 (10)0.0291 (9)0.0293 (9)−0.0030 (8)0.0152 (8)−0.0034 (7)
C110.0324 (10)0.0318 (9)0.0402 (10)0.0008 (8)0.0209 (9)−0.0011 (8)
C120.0267 (8)0.0294 (9)0.0321 (8)−0.0011 (9)0.0096 (7)0.0049 (9)
C130.0336 (10)0.0366 (10)0.0272 (8)0.0008 (9)0.0099 (8)−0.0011 (8)
C140.0320 (10)0.0348 (10)0.0321 (9)0.0005 (8)0.0148 (8)−0.0034 (8)
C150.0306 (8)0.0239 (8)0.0264 (7)0.0026 (9)0.0118 (7)0.0045 (8)
C160.0327 (10)0.0310 (10)0.0311 (9)0.0025 (8)0.0135 (8)0.0004 (8)
C170.0357 (11)0.0349 (10)0.0428 (10)0.0080 (9)0.0206 (9)0.0025 (9)
C180.0279 (9)0.0415 (13)0.0511 (12)0.0045 (9)0.0135 (9)0.0003 (10)
C190.0337 (11)0.0396 (12)0.0404 (11)0.0017 (9)0.0050 (9)−0.0066 (9)
C200.0324 (10)0.0334 (10)0.0328 (10)0.0045 (9)0.0113 (8)−0.0030 (8)
C210.0511 (15)0.0618 (15)0.0523 (14)0.0084 (12)0.0334 (13)0.0191 (12)
Cl—C121.7425 (18)C10—H100.9500
S—C11.7523 (15)C11—C121.386 (3)
S—C211.809 (3)C11—H110.9500
O—C71.378 (2)C12—C131.382 (3)
O—C81.3907 (18)C13—C141.390 (3)
C1—C81.361 (2)C13—H130.9500
C1—C21.443 (2)C14—H140.9500
C2—C71.390 (2)C15—C201.397 (3)
C2—C31.401 (2)C15—C161.404 (2)
C3—C41.394 (2)C16—C171.388 (3)
C3—H30.9500C16—H160.9500
C4—C51.417 (2)C17—C181.382 (3)
C4—C151.489 (2)C17—H170.9500
C5—C61.385 (3)C18—C191.381 (3)
C5—H50.9500C18—H180.9500
C6—C71.382 (2)C19—C201.391 (3)
C6—H60.9500C19—H190.9500
C8—C91.462 (2)C20—H200.9500
C9—C101.396 (3)C21—H21A0.9800
C9—C141.407 (2)C21—H21B0.9800
C10—C111.384 (3)C21—H21C0.9800
C1—S—C2199.95 (11)C12—C11—H11120.6
C7—O—C8106.06 (12)C13—C12—C11121.37 (17)
C8—C1—C2106.82 (14)C13—C12—Cl118.84 (14)
C8—C1—S128.07 (14)C11—C12—Cl119.78 (14)
C2—C1—S125.10 (13)C12—C13—C14119.59 (17)
C7—C2—C3119.55 (15)C12—C13—H13120.2
C7—C2—C1105.65 (15)C14—C13—H13120.2
C3—C2—C1134.79 (14)C13—C14—C9120.33 (17)
C4—C3—C2119.35 (14)C13—C14—H14119.8
C4—C3—H3120.3C9—C14—H14119.8
C2—C3—H3120.3C20—C15—C16117.61 (17)
C3—C4—C5118.70 (16)C20—C15—C4120.92 (16)
C3—C4—C15120.45 (14)C16—C15—C4121.46 (16)
C5—C4—C15120.84 (15)C17—C16—C15121.11 (18)
C6—C5—C4122.67 (16)C17—C16—H16119.4
C6—C5—H5118.7C15—C16—H16119.4
C4—C5—H5118.7C18—C17—C16120.21 (18)
C7—C6—C5116.66 (15)C18—C17—H17119.9
C7—C6—H6121.7C16—C17—H17119.9
C5—C6—H6121.7C19—C18—C17119.66 (19)
O—C7—C6126.34 (14)C19—C18—H18120.2
O—C7—C2110.60 (14)C17—C18—H18120.2
C6—C7—C2123.06 (16)C18—C19—C20120.46 (19)
C1—C8—O110.86 (15)C18—C19—H19119.8
C1—C8—C9134.88 (15)C20—C19—H19119.8
O—C8—C9114.26 (14)C19—C20—C15120.92 (18)
C10—C9—C14118.36 (17)C19—C20—H20119.5
C10—C9—C8120.64 (15)C15—C20—H20119.5
C14—C9—C8121.00 (16)S—C21—H21A109.5
C11—C10—C9121.59 (16)S—C21—H21B109.5
C11—C10—H10119.2H21A—C21—H21B109.5
C9—C10—H10119.2S—C21—H21C109.5
C10—C11—C12118.75 (17)H21A—C21—H21C109.5
C10—C11—H11120.6H21B—C21—H21C109.5
C21—S—C1—C8114.7 (2)C1—C8—C9—C10−158.1 (2)
C21—S—C1—C2−63.9 (2)O—C8—C9—C1021.4 (3)
C8—C1—C2—C70.1 (2)C1—C8—C9—C1422.2 (4)
S—C1—C2—C7178.95 (16)O—C8—C9—C14−158.26 (19)
C8—C1—C2—C3−178.6 (2)C14—C9—C10—C110.1 (3)
S—C1—C2—C30.3 (4)C8—C9—C10—C11−179.60 (18)
C7—C2—C3—C4−0.9 (3)C9—C10—C11—C120.6 (3)
C1—C2—C3—C4177.6 (2)C10—C11—C12—C13−0.8 (3)
C2—C3—C4—C51.6 (3)C10—C11—C12—Cl178.00 (16)
C2—C3—C4—C15−177.07 (18)C11—C12—C13—C140.3 (3)
C3—C4—C5—C6−1.3 (3)Cl—C12—C13—C14−178.46 (15)
C15—C4—C5—C6177.4 (2)C12—C13—C14—C90.3 (3)
C4—C5—C6—C70.2 (3)C10—C9—C14—C13−0.5 (3)
C8—O—C7—C6178.7 (2)C8—C9—C14—C13179.14 (18)
C8—O—C7—C2−0.9 (2)C3—C4—C15—C20150.24 (19)
C5—C6—C7—O−179.0 (2)C5—C4—C15—C20−28.4 (3)
C5—C6—C7—C20.5 (3)C3—C4—C15—C16−28.6 (3)
C3—C2—C7—O179.40 (17)C5—C4—C15—C16152.8 (2)
C1—C2—C7—O0.5 (2)C20—C15—C16—C17−1.9 (3)
C3—C2—C7—C6−0.2 (3)C4—C15—C16—C17176.97 (18)
C1—C2—C7—C6−179.1 (2)C15—C16—C17—C180.4 (3)
C2—C1—C8—O−0.6 (3)C16—C17—C18—C191.3 (3)
S—C1—C8—O−179.45 (15)C17—C18—C19—C20−1.4 (3)
C2—C1—C8—C9178.9 (2)C18—C19—C20—C15−0.2 (3)
S—C1—C8—C90.1 (4)C16—C15—C20—C191.8 (3)
C7—O—C8—C10.9 (2)C4—C15—C20—C19−177.09 (19)
C7—O—C8—C9−178.73 (16)
  7 in total

1.  Benzofurans and another constituent from seeds of Styrax officinalis.

Authors:  Yurdanur Yayla Akgul; Huseyin Anil
Journal:  Phytochemistry       Date:  2003-08       Impact factor: 4.072

2.  A new structural alternative in benzo[b]furans for antimicrobial activity.

Authors:  M Wahab Khan; M Jahangir Alam; M A Rashid; R Chowdhury
Journal:  Bioorg Med Chem       Date:  2005-08-15       Impact factor: 3.641

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Artoindonesianins X and Y, two isoprenylated 2-arylbenzofurans, from Artocarpus fretessi (Moraceae).

Authors:  Nunuk H Soekamto; Sjamsul A Achmad; Emilio L Ghisalberti; Euis H Hakim; Yana M Syah
Journal:  Phytochemistry       Date:  2003-10       Impact factor: 4.072

5.  2-(4-Fluoro-phen-yl)-3-methyl-sulfanyl-5-phenyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-17

6.  3-Ethyl-sulfanyl-2-(4-fluoro-phen-yl)-5-phenyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-13

7.  Synthesis of potent antitumor and antiviral benzofuran derivatives.

Authors:  Shadia A Galal; Amira S Abd El-All; Mohamed M Abdallah; Hoda I El-Diwani
Journal:  Bioorg Med Chem Lett       Date:  2009-03-21       Impact factor: 2.823

  7 in total
  2 in total

1.  2-(3-Fluoro-phen-yl)-3-methyl-sulfanyl-5-phenyl-1-benzofuran.

Authors:  Pil Ja Seo; Hong Dae Choi; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-22

2.  5-(4-Fluoro-phen-yl)-3-methyl-sulfanyl-2-phenyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-30
  2 in total

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