Literature DB >> 21580591

Diethyl 2-[(N-benzyl-N-methyl-amino)(phen-yl)meth-yl]propane-dioate.

Ihssan Meskini, Maria Daoudi, Jean-Claude Daran, Hafid Zouihri, Taibi Ben Hadda.   

Abstract

In the title compound, C(22)H(27)NO(4), the mean planes of the two benzene rings form a dihedral angle of 73.54 (13)°. One of the methyl groups is disordered over two sites, with site occupation factors of 0.47 (15) and 0.53 (15). The crystal packing is controlled by van der Waals forces and a possible C-H⋯O inter-action, forming a chain running parallel to the a axis.

Entities:  

Year:  2010        PMID: 21580591      PMCID: PMC2984050          DOI: 10.1107/S1600536810007506

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related compounds displaying biological activity, see: Dayam et al. (2007 ▶); Patil et al. (2007 ▶); Ramkumar et al. (2008 ▶); Sechi et al. (2009a ▶,b ▶); Zeng et al. (2008a ▶,b ▶). For the synthetic procedure, see: Pommier & Neamati (2006 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C22H27NO4 M = 369.45 Monoclinic, a = 9.3074 (2) Å b = 5.9077 (1) Å c = 37.0971 (7) Å β = 92.999 (1)° V = 2037.00 (7) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.24 × 0.20 × 0.13 mm

Data collection

Bruker X8 APEXII CCD area-detector diffractometer 25575 measured reflections 4138 independent reflections 3411 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.070 wR(F 2) = 0.159 S = 1.25 4138 reflections 257 parameters 1 restraint H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.26 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810007506/pv2262sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810007506/pv2262Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H27NO4F(000) = 792
Mr = 369.45Dx = 1.205 Mg m3
Monoclinic, P21/cMelting point = 380–382 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 9.3074 (2) ÅCell parameters from 3214 reflections
b = 5.9077 (1) Åθ = 1.9–25.3°
c = 37.0971 (7) ŵ = 0.08 mm1
β = 92.999 (1)°T = 296 K
V = 2037.00 (7) Å3Block, colourless
Z = 40.24 × 0.20 × 0.13 mm
Bruker X8 APEXII CCD area-detector diffractometer3411 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.038
graphiteθmax = 26.4°, θmin = 1.1°
φ and ω scansh = −11→11
25575 measured reflectionsk = −7→7
4138 independent reflectionsl = −46→46
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.070Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.159H-atom parameters constrained
S = 1.25w = 1/[σ2(Fo2) + (0.0364P)2 + 1.9835P] where P = (Fo2 + 2Fc2)/3
4138 reflections(Δ/σ)max < 0.001
257 parametersΔρmax = 0.27 e Å3
1 restraintΔρmin = −0.26 e Å3
Experimental. Yield = 78% (1.24 g). Rf = 0.45 (ether/hexane:1/1). Mp = 380-382 K.IR Spectroscopic (KBr, ν cm-1) analysis: 2860/2984 (C—H);1745 (CO); 1216/1301 (C—O); 1584/1601 (C=C), 1138, 1021.NMR analysis: 1H-NMR (250 MHz, CDCl3) δ (ppm): 7.2-7.4(m, 10H, aromat), 4.65 (d, H, Ph—C3H, 3J = 12.15 Hz), 4.01 (dq, 2HAB, OCH2CH3, 2JAB = 14.34 Hz, 3J =7.06 Hz), 4.35 (dq, 2HAB, OCH2CH3, 2JAB = 14.34 Hz,3J = 7.06 Hz), 4.32 (d, H, C2H(CO2Et)2 , 3J = 12.20 Hz), 3.5 (d, 1H, CH2Ph, 3J = 13.2 Hz), 3.25 (d, 1H, CH2Ph, 3J = 13.5 Hz), 2.05 (s, 3H, CH3), 1.33 (t, 3H, OCH2CH3, 3J = 7.2 Hz), 1.01 (t, 3H, OCH2CH3, 3J = 7.2 Hz). 13C-NMR (250 MHz, CDCl3) δ (ppm): 167.97 (C=O), 167.93 (C=O), 133.4 (Cquat, C-(Ph), 132.6 (Cquat, CPhCH2), 126.91/128.03 (Ctert, 10CH aromt), 67.47 (Ctert, C3HPh), 61.24 -61.3 (2 C, 2CH2CH3, ester), 55.39 (Ctert, C2H-(CO2Et), 58.70 (Cses, CľH2N), 36.94 (Cter, CH3N), 14.15/13.73 ( 2 C, 2CH3, esters).. MS (IE) Calcd for [M]+ C22H27NO4: 369.45. [M+H]+. (m/z) = 370, [M—CH(CO2Et)2]+ (m/z) = 159 (100%).Elemental analysis for C22H27NO4 : Calc (Found): C 71.52 (71.48), H 7.37 (7.35), N 3.79 (3.81).The purity of the compound was checked by determining its melting point (380-382 K). Suitable single crystal of malonate derivative (I) was obtained by recrystallization from ethanol. A colorless crystal of (I) having approximate dimensions of 0.24 x 0.20 x 0.09 mm was mounted on a glass fibre. All measurements were made in the φ and ω scans technique on a CCD X8 Bruker diffractometer with graphite monochromatized MoKα radiation at room temperature (296 (2) K).The data collection nominally covered a sphere of reciprocal space, by a combination of five sets of exposures; each set had a different φ angle for the crystal and each exposure covered 0.5° in ω and 30 seconds in time. The crystal-to-detector distance was 37.5 mm.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.4969 (3)0.3979 (4)0.18855 (6)0.0302 (5)
H1A0.54420.54080.18410.036*
H1B0.56460.30160.20210.036*
C20.5612 (3)0.3238 (4)0.12647 (6)0.0290 (5)
H20.59000.48320.12790.035*
C30.4123 (3)0.0546 (4)0.15968 (7)0.0391 (6)
H3A0.3777−0.00940.13710.059*
H3B0.33740.04940.17650.059*
H3C0.4938−0.03050.16910.059*
C40.4827 (3)0.2917 (4)0.08947 (6)0.0318 (6)
H40.44930.13490.08700.038*
C50.5794 (3)0.3490 (5)0.05896 (6)0.0354 (6)
C60.3536 (3)0.4517 (5)0.08739 (6)0.0402 (7)
C110.3667 (3)0.4396 (4)0.21050 (6)0.0277 (5)
C120.3634 (3)0.3693 (5)0.24598 (7)0.0379 (6)
H120.44110.29030.25650.045*
C130.2448 (3)0.4158 (5)0.26603 (7)0.0453 (7)
H130.24340.36730.28990.054*
C140.1298 (3)0.5327 (5)0.25081 (7)0.0404 (7)
H140.05090.56490.26430.048*
C150.1318 (3)0.6024 (5)0.21538 (7)0.0388 (6)
H150.05360.68050.20490.047*
C160.2495 (3)0.5565 (4)0.19540 (6)0.0328 (6)
H160.25000.60460.17150.039*
C210.6990 (3)0.1854 (4)0.13072 (6)0.0274 (5)
C220.7136 (3)−0.0263 (4)0.11485 (6)0.0306 (5)
H220.6362−0.08970.10150.037*
C230.8421 (3)−0.1431 (5)0.11870 (7)0.0380 (6)
H230.8507−0.28390.10780.046*
C240.9581 (3)−0.0524 (5)0.13858 (7)0.0396 (6)
H241.0448−0.13080.14080.048*
C250.9443 (3)0.1542 (5)0.15501 (7)0.0403 (7)
H251.02130.21510.16880.048*
C260.8162 (3)0.2716 (5)0.15109 (6)0.0352 (6)
H260.80820.41150.16230.042*
C310.0998 (4)0.4617 (8)0.07836 (10)0.0745 (12)
H31A0.06440.47590.10240.089*0.53
H31B0.11560.61240.06900.089*0.53
H31C0.02770.37310.09000.089*0.47
H31D0.11450.59990.09220.089*0.47
C320.0021 (6)0.3502 (13)0.05651 (16)0.0556 (17)0.53
H32A−0.08530.43640.05420.083*0.53
H32B−0.01730.20470.06670.083*0.53
H32C0.03980.33050.03310.083*0.53
C32B0.0454 (7)0.5197 (15)0.04332 (18)0.059 (2)0.47
H32D0.05140.39080.02770.088*0.47
H32E0.10100.64180.03420.088*0.47
H32F−0.05330.56590.04430.088*0.47
C410.6429 (4)0.2245 (6)0.00078 (8)0.0617 (10)
H41A0.69150.36980.00090.074*
H41B0.58370.2120−0.02140.074*
C420.7512 (5)0.0371 (8)0.00302 (11)0.0870 (13)
H42A0.81780.06230.02330.131*
H42B0.80250.0334−0.01880.131*
H42C0.7029−0.10470.00600.131*
N10.4551 (2)0.2901 (3)0.15416 (5)0.0284 (5)
O10.3600 (3)0.6519 (4)0.09128 (6)0.0592 (6)
O20.2341 (2)0.3345 (4)0.07988 (5)0.0529 (6)
O30.6643 (3)0.5002 (4)0.05932 (5)0.0576 (6)
O40.5537 (2)0.2080 (4)0.03170 (5)0.0509 (6)
U11U22U33U12U13U23
C10.0356 (13)0.0276 (13)0.0275 (12)−0.0006 (11)0.0029 (10)−0.0026 (10)
C20.0402 (14)0.0208 (12)0.0263 (11)0.0010 (11)0.0052 (10)−0.0036 (10)
C30.0504 (16)0.0299 (14)0.0380 (14)−0.0036 (13)0.0112 (12)−0.0053 (12)
C40.0401 (14)0.0275 (13)0.0277 (12)0.0078 (11)0.0007 (10)−0.0033 (10)
C50.0488 (16)0.0314 (15)0.0260 (12)0.0143 (13)0.0012 (11)−0.0011 (11)
C60.0539 (18)0.0454 (18)0.0209 (12)0.0153 (15)−0.0006 (11)−0.0032 (12)
C110.0350 (13)0.0221 (12)0.0260 (11)−0.0042 (10)0.0035 (9)−0.0055 (10)
C120.0437 (15)0.0389 (15)0.0311 (13)0.0070 (13)0.0022 (11)0.0039 (11)
C130.0549 (17)0.0533 (19)0.0288 (13)0.0034 (15)0.0119 (12)0.0065 (13)
C140.0393 (15)0.0461 (17)0.0370 (14)0.0000 (13)0.0124 (11)−0.0046 (13)
C150.0362 (14)0.0424 (16)0.0379 (14)0.0048 (13)0.0024 (11)−0.0014 (12)
C160.0414 (14)0.0329 (14)0.0244 (11)0.0009 (12)0.0037 (10)0.0009 (10)
C210.0357 (13)0.0242 (12)0.0229 (11)0.0001 (11)0.0060 (9)0.0038 (9)
C220.0324 (13)0.0269 (13)0.0320 (12)0.0010 (11)−0.0028 (10)−0.0006 (10)
C230.0425 (15)0.0295 (14)0.0417 (14)0.0065 (12)−0.0018 (12)0.0001 (12)
C240.0337 (14)0.0449 (17)0.0400 (14)0.0060 (13)−0.0009 (11)0.0090 (13)
C250.0338 (14)0.0526 (18)0.0343 (13)−0.0098 (13)−0.0006 (11)−0.0007 (13)
C260.0465 (15)0.0309 (14)0.0287 (12)−0.0108 (12)0.0078 (11)−0.0039 (11)
C310.059 (2)0.104 (3)0.060 (2)0.048 (2)−0.0056 (17)−0.011 (2)
C320.030 (3)0.085 (5)0.051 (3)0.008 (3)−0.005 (3)−0.014 (3)
C32B0.035 (3)0.081 (6)0.061 (4)0.010 (4)0.004 (3)0.024 (4)
C410.102 (3)0.053 (2)0.0321 (15)0.002 (2)0.0242 (16)−0.0109 (14)
C420.115 (3)0.082 (3)0.068 (2)0.019 (3)0.041 (2)−0.011 (2)
N10.0364 (11)0.0226 (10)0.0265 (10)0.0002 (9)0.0063 (8)−0.0030 (8)
O10.0856 (17)0.0391 (13)0.0525 (13)0.0256 (12)0.0007 (11)−0.0037 (10)
O20.0466 (12)0.0626 (15)0.0481 (12)0.0262 (11)−0.0087 (9)−0.0141 (11)
O30.0867 (16)0.0475 (13)0.0407 (11)−0.0182 (13)0.0234 (11)−0.0123 (10)
O40.0759 (15)0.0480 (13)0.0296 (9)−0.0057 (11)0.0112 (9)−0.0109 (9)
C1—N11.460 (3)C21—C221.392 (3)
C1—C111.515 (3)C22—C231.382 (3)
C1—H1A0.9700C22—H220.9300
C1—H1B0.9700C23—C241.383 (4)
C2—N11.475 (3)C23—H230.9300
C2—C211.522 (3)C24—C251.373 (4)
C2—C41.533 (3)C24—H240.9300
C2—H20.9800C25—C261.380 (4)
C3—N11.464 (3)C25—H250.9300
C3—H3A0.9600C26—H260.9300
C3—H3B0.9600C31—C321.357 (6)
C3—H3C0.9600C31—C32B1.412 (7)
C4—C51.521 (4)C31—O21.457 (4)
C4—C61.528 (4)C31—H31A0.9700
C4—H40.9800C31—H31B0.9700
C5—O31.192 (3)C31—H31C0.9700
C5—O41.323 (3)C31—H31D0.9700
C6—O11.192 (3)C32—H31C1.2600
C6—O21.327 (4)C32—H32A0.9600
C11—C121.382 (3)C32—H32B0.9600
C11—C161.385 (3)C32—H32C0.9600
C12—C131.390 (4)C32B—H32D0.9600
C12—H120.9300C32B—H32E0.9600
C13—C141.370 (4)C32B—H32F0.9600
C13—H130.9300C41—O41.454 (3)
C14—C151.378 (4)C41—C421.497 (5)
C14—H140.9300C41—H41A0.9700
C15—C161.381 (4)C41—H41B0.9700
C15—H150.9300C42—H42A0.9600
C16—H160.9300C42—H42B0.9600
C21—C261.392 (3)C42—H42C0.9600
N1—C1—C11110.89 (19)C23—C24—H24120.2
N1—C1—H1A109.5C24—C25—C26120.0 (2)
C11—C1—H1A109.5C24—C25—H25120.0
N1—C1—H1B109.5C26—C25—H25120.0
C11—C1—H1B109.5C25—C26—C21121.5 (2)
H1A—C1—H1B108.0C25—C26—H26119.3
N1—C2—C21116.50 (19)C21—C26—H26119.3
N1—C2—C4107.57 (19)C32—C31—C32B51.0 (4)
C21—C2—C4112.69 (19)C32—C31—O2108.7 (4)
N1—C2—H2106.5C32B—C31—O2115.3 (4)
C21—C2—H2106.5C32—C31—H31A110.0
C4—C2—H2106.5C32B—C31—H31A134.6
N1—C3—H3A109.5O2—C31—H31A110.0
N1—C3—H3B109.5C32—C31—H31B110.0
H3A—C3—H3B109.5C32B—C31—H31B60.1
N1—C3—H3C109.5O2—C31—H31B110.0
H3A—C3—H3C109.5H31A—C31—H31B108.3
H3B—C3—H3C109.5C32—C31—H31C63.0
C5—C4—C6108.6 (2)C32B—C31—H31C108.5
C5—C4—C2111.5 (2)O2—C31—H31C108.5
C6—C4—C2107.79 (19)H31A—C31—H31C50.3
C5—C4—H4109.6H31B—C31—H31C140.9
C6—C4—H4109.6C32—C31—H31D142.7
C2—C4—H4109.6C32B—C31—H31D108.4
O3—C5—O4125.0 (2)O2—C31—H31D108.5
O3—C5—C4125.2 (2)H31A—C31—H31D59.1
O4—C5—C4109.8 (2)H31B—C31—H31D52.9
O1—C6—O2125.4 (3)H31C—C31—H31D107.5
O1—C6—C4125.0 (3)C31—C32—H31C43.3
O2—C6—C4109.6 (2)C31—C32—H32A109.5
C12—C11—C16118.6 (2)H31C—C32—H32A98.3
C12—C11—C1121.4 (2)C31—C32—H32B109.5
C16—C11—C1119.9 (2)H31C—C32—H32B74.8
C11—C12—C13120.6 (2)C31—C32—H32C109.5
C11—C12—H12119.7H31C—C32—H32C147.7
C13—C12—H12119.7C31—C32B—H32D109.5
C14—C13—C12120.2 (2)C31—C32B—H32E109.5
C14—C13—H13119.9H32D—C32B—H32E109.5
C12—C13—H13119.9C31—C32B—H32F109.5
C13—C14—C15119.6 (2)H32D—C32B—H32F109.5
C13—C14—H14120.2H32E—C32B—H32F109.5
C15—C14—H14120.2O4—C41—C42108.5 (3)
C14—C15—C16120.3 (3)O4—C41—H41A110.0
C14—C15—H15119.9C42—C41—H41A110.0
C16—C15—H15119.9O4—C41—H41B110.0
C15—C16—C11120.7 (2)C42—C41—H41B110.0
C15—C16—H16119.6H41A—C41—H41B108.4
C11—C16—H16119.6C41—C42—H42A109.5
C26—C21—C22117.9 (2)C41—C42—H42B109.5
C26—C21—C2119.5 (2)H42A—C42—H42B109.5
C22—C21—C2122.6 (2)C41—C42—H42C109.5
C23—C22—C21120.5 (2)H42A—C42—H42C109.5
C23—C22—H22119.7H42B—C42—H42C109.5
C21—C22—H22119.7C1—N1—C3110.74 (19)
C22—C23—C24120.6 (3)C1—N1—C2113.09 (19)
C22—C23—H23119.7C3—N1—C2114.98 (19)
C24—C23—H23119.7C6—O2—C31116.5 (3)
C25—C24—C23119.5 (3)C5—O4—C41118.2 (2)
C25—C24—H24120.2
D—H···AD—HH···AD···AD—H···A
C32—H32A···O3i0.962.383.273 (3)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C32—H32A⋯O3i0.962.383.273 (3)155

Symmetry code: (i) .

  10 in total

1.  Mining the NCI antiviral compounds for HIV-1 integrase inhibitors.

Authors:  Jinxia Deng; James A Kelley; Joseph J Barchi; Tino Sanchez; Raveendra Dayam; Yves Pommier; Nouri Neamati
Journal:  Bioorg Med Chem       Date:  2006-02-07       Impact factor: 3.641

2.  A short history of SHELX.

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3.  Design, synthesis, molecular modeling, and anti-HIV-1 integrase activity of a series of photoactivatable diketo acid-containing inhibitors as affinity probes.

Authors:  Mario Sechi; Fabrizio Carta; Luciano Sannia; Roberto Dallocchio; Alessandro Dessì; Rasha I Al-Safi; Nouri Neamati
Journal:  Antiviral Res       Date:  2009-01-09       Impact factor: 5.970

4.  Discovery of 3-acetyl-4-hydroxy-2-pyranone derivatives and their difluoridoborate complexes as a novel class of HIV-1 integrase inhibitors.

Authors:  Kavya Ramkumar; Konstantin V Tambov; Rambabu Gundla; Alexander V Manaev; Alexandr V Manaev; Vladimir Yarovenko; Valery F Traven; Nouri Neamati
Journal:  Bioorg Med Chem       Date:  2008-08-30       Impact factor: 3.641

5.  Synthesis and biological evaluation of novel 5(H)-phenanthridin-6-ones, 5(H)-phenanthridin-6-one diketo acid, and polycyclic aromatic diketo acid analogs as new HIV-1 integrase inhibitors.

Authors:  Shivaputra Patil; Shantaram Kamath; Tino Sanchez; Nouri Neamati; Raymond F Schinazi; John K Buolamwini
Journal:  Bioorg Med Chem       Date:  2006-11-16       Impact factor: 3.641

6.  Efficient synthesis and utilization of phenyl-substituted heteroaromatic carboxylic acids as aryl diketo acid isosteres in the design of novel HIV-1 integrase inhibitors.

Authors:  Li-Fan Zeng; Hu-Shan Zhang; Yun-Hua Wang; Tino Sanchez; Yong-Tang Zheng; Nouri Neamati; Ya-Qiu Long
Journal:  Bioorg Med Chem Lett       Date:  2008-07-15       Impact factor: 2.823

7.  Substituted 2-pyrrolinone inhibitors of HIV-1 integrase.

Authors:  Raveendra Dayam; Laith Q Al-Mawsawi; Nouri Neamati
Journal:  Bioorg Med Chem Lett       Date:  2007-09-20       Impact factor: 2.823

8.  Novel dimeric aryldiketo containing inhibitors of HIV-1 integrase: effects of the phenyl substituent and the linker orientation.

Authors:  Li-Fan Zeng; Xiao-Hua Jiang; Tino Sanchez; Hu-Shan Zhang; Raveendra Dayam; Nouri Neamati; Ya-Qiu Long
Journal:  Bioorg Med Chem       Date:  2008-07-08       Impact factor: 3.641

9.  Design and synthesis of novel dihydroquinoline-3-carboxylic acids as HIV-1 integrase inhibitors.

Authors:  Mario Sechi; Giuseppe Rizzi; Alessia Bacchi; Mauro Carcelli; Dominga Rogolino; Nicolino Pala; Tino W Sanchez; Laleh Taheri; Raveendra Dayam; Nouri Neamati
Journal:  Bioorg Med Chem       Date:  2008-11-06       Impact factor: 3.641

10.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  10 in total

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