Literature DB >> 21580555

Bis(7-meth-oxy-1-methyl-4,9-dihydro-3H-β-carbolinium) tetra-chloridozincate.

Zukhra Ch Kadirova, Stanislav A Chepulsky, Nusrat A Parpiev, Samat A Talipov, Khasan T Sharipov.   

Abstract

In the title compound, (C(13)H(15)N(2)O)(2)[ZnCl(4)], also known as di(harmalinium) tetra-chloridozincate, the Zn(II) atom is in a distorted tetrahedral coordination of the chlorido ligands. In the cation, the meth-oxy and methyl groups are both coplanar with with rings to which they are attached [maximum deviations of 0.232 (4) and 0.259 (4) Å, respectively]. In the crystal, the alkaloid cations and metal complex anions inter-act by way of N-H⋯Cl hydrogen bonds involving each Cl atom, resulting in a network structure.

Entities:  

Year:  2010        PMID: 21580555      PMCID: PMC2983946          DOI: 10.1107/S1600536810010822

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the activity of metal complexes with harmaline (7-methoxy-1-methyl-4,9-dihydro-3H-pyrido[3,4-b]indole), see: Al-Allaf et al. (1990 ▶). For the structures of harmaline and related compounds, see: Reimers et al. (1984 ▶); Wouters (1997 ▶); Ferretti et al. (2004 ▶). For zincate anions, see: Ma et al. (2009 ▶).

Experimental

Crystal data

(C13H15N2O)2[ZnCl4] M = 637.71 Monoclinic, a = 11.2314 (2) Å b = 19.1274 (2) Å c = 13.5614 (2) Å β = 107.0797 (16)° V = 2784.87 (7) Å3 Z = 4 Cu Kα radiation μ = 5.01 mm−1 T = 293 K 0.25 × 0.12 × 0.08 mm

Data collection

Oxford Diffraction Xcalibur diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2007 ▶) T min = 0.544, T max = 0.644 12418 measured reflections 4954 independent reflections 3724 reflections with I > 2σ(I) R int = 0.035 3 standard reflections every 100 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.116 S = 1.04 4954 reflections 334 parameters H-atom parameters constrained Δρmax = 0.54 e Å−3 Δρmin = −0.46 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810010822/bv2139sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810010822/bv2139Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C13H15N2O)2[ZnCl4]F(000) = 1312
Mr = 637.71Dx = 1.521 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54184 Å
a = 11.2314 (2) ÅCell parameters from 4954 reflections
b = 19.1274 (2) Åθ = 4.1–71.0°
c = 13.5614 (2) ŵ = 5.01 mm1
β = 107.0797 (16)°T = 293 K
V = 2784.87 (7) Å3Monoclinic, colourless
Z = 40.25 × 0.12 × 0.08 mm
Oxford Diffraction Xcalibur diffractometer3724 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.035
graphiteθmax = 71.0°, θmin = 4.1°
heavy atom scansh = −11→13
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2007)k = −18→22
Tmin = 0.544, Tmax = 0.644l = −16→16
12418 measured reflections3 standard reflections every 120 reflections
4954 independent reflections intensity decay: none
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.116H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0588P)2 + 1.2361P] where P = (Fo2 + 2Fc2)/3
4954 reflections(Δ/σ)max < 0.001
334 parametersΔρmax = 0.54 e Å3
0 restraintsΔρmin = −0.46 e Å3
0 constraints
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.76391 (4)0.05281 (2)0.78045 (4)0.04473 (15)
Cl10.80185 (10)0.14137 (5)0.68163 (7)0.0583 (3)
Cl20.90754 (9)−0.03331 (5)0.80919 (8)0.0623 (3)
Cl30.57608 (8)0.00479 (5)0.70451 (9)0.0678 (3)
Cl40.77170 (12)0.10536 (5)0.93383 (8)0.0734 (3)
O10.1080 (2)0.18482 (13)0.5051 (2)0.0595 (7)
N10.0972 (2)−0.04362 (13)0.6637 (2)0.0402 (6)
H1A0.0414−0.04000.69530.048*
N20.2328 (3)−0.21801 (15)0.6886 (2)0.0480 (7)
H2A0.2367−0.25660.72210.058*
C10.1660 (3)−0.10271 (17)0.6593 (2)0.0400 (7)
C20.1632 (3)−0.16743 (17)0.7074 (3)0.0444 (8)
C30.3039 (3)−0.21253 (19)0.6142 (3)0.0540 (9)
H3A0.2531−0.23010.54820.065*
H3B0.3768−0.24230.63690.065*
C40.3451 (3)−0.14021 (19)0.5997 (3)0.0508 (9)
H4A0.4222−0.13000.65290.061*
H4B0.3613−0.13700.53340.061*
C50.2495 (3)−0.08782 (17)0.6044 (2)0.0390 (7)
C60.2285 (3)−0.01784 (17)0.5711 (2)0.0388 (7)
C70.2806 (3)0.02628 (19)0.5116 (2)0.0476 (8)
H7A0.34400.01040.48600.057*
C80.2367 (3)0.0920 (2)0.4926 (3)0.0521 (9)
H8A0.26960.12140.45260.063*
C90.1411 (3)0.11741 (18)0.5325 (2)0.0451 (8)
C100.0876 (3)0.07649 (17)0.5905 (2)0.0402 (7)
H10A0.02470.09320.61610.048*
C110.1329 (3)0.00793 (16)0.6094 (2)0.0357 (7)
C120.0871 (4)−0.1803 (2)0.7790 (3)0.0640 (11)
H12A0.0985−0.22770.80320.096*
H12B0.0007−0.17250.74330.096*
H12C0.1130−0.14900.83670.096*
C130.0274 (4)0.2179 (2)0.5539 (3)0.0582 (10)
H13A0.01110.26490.52860.087*
H13B0.06610.21880.62710.087*
H13C−0.04950.19250.53890.087*
N30.3936 (3)0.10991 (15)0.7707 (2)0.0473 (7)
H3C0.43950.07840.75500.057*
N40.2175 (3)0.03927 (17)0.9329 (2)0.0573 (8)
H4C0.21280.00350.97000.069*
O20.4732 (3)0.32178 (13)0.5990 (2)0.0626 (7)
C140.3153 (3)0.10024 (18)0.8312 (2)0.0437 (8)
C150.3010 (3)0.03874 (19)0.8826 (3)0.0482 (8)
C160.1328 (5)0.0970 (2)0.9292 (4)0.0863 (15)
H16A0.05490.08660.87710.104*
H16B0.11530.09940.99500.104*
C170.1742 (4)0.1655 (2)0.9072 (3)0.0649 (11)
H17A0.21740.18820.97170.078*
H17B0.10190.19370.87340.078*
C180.2582 (3)0.16256 (18)0.8406 (2)0.0442 (8)
C190.3027 (3)0.21319 (18)0.7847 (2)0.0422 (7)
C200.2842 (3)0.28532 (19)0.7657 (3)0.0495 (8)
H20A0.23190.31020.79490.059*
C210.3427 (3)0.31842 (18)0.7049 (3)0.0508 (9)
H21A0.33020.36610.69260.061*
C220.4230 (3)0.28139 (18)0.6597 (3)0.0474 (8)
C230.4460 (3)0.21113 (18)0.6765 (3)0.0462 (8)
H23A0.49880.18700.64700.055*
C240.3857 (3)0.17796 (17)0.7401 (2)0.0418 (7)
C250.3748 (4)−0.0254 (2)0.8814 (3)0.0622 (10)
H25A0.3504−0.06130.92090.093*
H25B0.4618−0.01540.91080.093*
H25C0.3601−0.04100.81150.093*
C260.5400 (4)0.2872 (2)0.5392 (3)0.0639 (11)
H26A0.57060.32110.50030.096*
H26B0.48580.25500.49290.096*
H26C0.60900.26220.58410.096*
U11U22U33U12U13U23
Zn10.0481 (3)0.0351 (2)0.0585 (3)0.0031 (2)0.0273 (2)0.0015 (2)
Cl10.0841 (6)0.0390 (5)0.0623 (5)−0.0064 (4)0.0377 (5)0.0017 (4)
Cl20.0606 (5)0.0537 (5)0.0827 (6)0.0188 (4)0.0365 (5)0.0093 (5)
Cl30.0475 (5)0.0542 (6)0.1095 (8)−0.0051 (4)0.0350 (5)−0.0148 (6)
Cl40.1199 (9)0.0529 (6)0.0611 (5)0.0163 (6)0.0481 (6)0.0022 (5)
O10.0744 (17)0.0393 (14)0.0765 (17)0.0082 (13)0.0404 (15)0.0158 (13)
N10.0428 (14)0.0343 (15)0.0504 (15)−0.0003 (12)0.0241 (12)0.0002 (12)
N20.0563 (17)0.0316 (15)0.0590 (16)0.0076 (13)0.0214 (14)0.0037 (13)
C10.0412 (17)0.0359 (17)0.0420 (16)−0.0014 (14)0.0111 (14)0.0004 (14)
C20.0469 (18)0.0370 (18)0.0516 (19)−0.0035 (16)0.0179 (15)−0.0037 (15)
C30.050 (2)0.048 (2)0.065 (2)0.0071 (17)0.0193 (18)−0.0009 (19)
C40.056 (2)0.046 (2)0.055 (2)0.0059 (17)0.0230 (17)−0.0025 (17)
C50.0387 (16)0.0397 (18)0.0395 (16)−0.0007 (14)0.0129 (14)−0.0052 (14)
C60.0418 (17)0.0381 (18)0.0365 (15)−0.0017 (14)0.0117 (13)−0.0052 (14)
C70.0515 (19)0.051 (2)0.0470 (18)0.0020 (17)0.0254 (16)0.0018 (17)
C80.056 (2)0.054 (2)0.0528 (19)−0.0036 (18)0.0251 (17)0.0096 (18)
C90.052 (2)0.0370 (18)0.0459 (17)−0.0005 (16)0.0145 (15)0.0049 (15)
C100.0418 (17)0.0360 (17)0.0445 (17)−0.0007 (14)0.0154 (14)0.0003 (14)
C110.0390 (16)0.0323 (16)0.0364 (15)−0.0045 (13)0.0121 (13)−0.0008 (13)
C120.079 (3)0.041 (2)0.087 (3)0.007 (2)0.048 (2)0.015 (2)
C130.060 (2)0.046 (2)0.071 (2)0.0085 (18)0.0224 (19)0.0100 (19)
N30.0495 (16)0.0385 (16)0.0592 (16)0.0045 (13)0.0243 (14)−0.0017 (14)
N40.070 (2)0.0500 (19)0.0582 (17)−0.0025 (16)0.0281 (16)0.0031 (15)
O20.0742 (17)0.0449 (15)0.0789 (17)−0.0053 (13)0.0384 (15)−0.0002 (14)
C140.0442 (18)0.0416 (19)0.0452 (17)−0.0028 (15)0.0127 (15)−0.0054 (15)
C150.053 (2)0.045 (2)0.0451 (18)−0.0054 (16)0.0107 (16)−0.0062 (16)
C160.096 (3)0.070 (3)0.119 (4)0.004 (3)0.071 (3)0.008 (3)
C170.072 (3)0.061 (3)0.075 (3)0.007 (2)0.041 (2)−0.001 (2)
C180.0444 (18)0.046 (2)0.0421 (17)−0.0009 (16)0.0124 (15)−0.0087 (15)
C190.0414 (17)0.0404 (18)0.0440 (17)0.0019 (14)0.0114 (14)−0.0082 (15)
C200.051 (2)0.0395 (19)0.060 (2)0.0088 (16)0.0193 (17)−0.0090 (17)
C210.059 (2)0.0306 (17)0.063 (2)0.0016 (16)0.0180 (18)−0.0051 (17)
C220.0457 (18)0.0406 (19)0.0560 (19)−0.0041 (16)0.0155 (16)−0.0038 (16)
C230.0437 (18)0.0421 (19)0.0550 (19)0.0021 (16)0.0179 (16)−0.0051 (16)
C240.0388 (17)0.0348 (18)0.0495 (18)0.0004 (14)0.0094 (14)−0.0061 (15)
C250.077 (3)0.045 (2)0.068 (2)0.006 (2)0.026 (2)0.0060 (19)
C260.069 (3)0.061 (3)0.072 (2)−0.002 (2)0.037 (2)0.001 (2)
Zn1—Cl32.2536 (10)C14—C181.377 (5)
Zn1—Cl22.2580 (10)C14—C151.400 (5)
Zn1—Cl12.2765 (9)C15—C251.484 (5)
Zn1—Cl42.2885 (10)C16—C171.449 (6)
O1—C91.363 (4)C17—C181.487 (5)
O1—C131.417 (4)C18—C191.409 (5)
N1—C111.359 (4)C19—C201.407 (5)
N1—C11.380 (4)C19—C241.422 (4)
N2—C21.315 (4)C20—C211.353 (5)
N2—C31.463 (4)C21—C221.420 (5)
C1—C51.388 (4)C22—C231.375 (5)
C1—C21.404 (4)C23—C241.396 (5)
C2—C121.491 (5)N1—H1A0.86
C3—C41.490 (5)N2—H2A0.86
C4—C51.484 (4)C3—H3A0.97
C5—C61.410 (5)C3—H3B0.97
C6—C71.407 (4)C4—H4A0.97
C6—C111.412 (4)C4—H4B0.97
C7—C81.348 (5)C7—H7A0.93
C8—C91.422 (5)C8—H8A0.93
C9—C101.367 (4)C10—H10A0.93
C10—C111.403 (4)C12—H12A0.96
N3—C241.361 (4)C12—H12B0.96
N3—C141.381 (4)C12—H12C0.96
N4—C151.312 (5)C13—H13A0.96
N4—C161.450 (5)C13—H13B0.96
O2—C221.365 (4)C13—H13C0.96
O2—C261.420 (4)
Cl3—Zn1—Cl2107.88 (4)C19—C18—C17133.6 (3)
Cl3—Zn1—Cl1110.26 (4)C20—C19—C18135.7 (3)
Cl2—Zn1—Cl1113.37 (4)C20—C19—C24117.8 (3)
Cl3—Zn1—Cl4112.03 (4)C18—C19—C24106.5 (3)
Cl2—Zn1—Cl4109.20 (4)C21—C20—C19119.9 (3)
Cl1—Zn1—Cl4104.15 (4)C20—C21—C22120.9 (3)
C9—O1—C13117.1 (3)O2—C22—C23124.2 (3)
C11—N1—C1108.2 (2)O2—C22—C21113.9 (3)
C2—N2—C3123.8 (3)C23—C22—C21121.9 (3)
N1—C1—C5109.3 (3)C22—C23—C24116.4 (3)
N1—C1—C2127.8 (3)N3—C24—C23128.5 (3)
C5—C1—C2122.8 (3)N3—C24—C19108.4 (3)
N2—C2—C1117.6 (3)C23—C24—C19123.1 (3)
N2—C2—C12119.5 (3)C1—N1—H1A126
C1—C2—C12122.9 (3)C11—N1—H1A126
N2—C3—C4114.3 (3)C2—N2—H2A118
C5—C4—C3111.4 (3)C3—N2—H2A118
C1—C5—C6106.9 (3)N2—C3—H3A109
C1—C5—C4119.7 (3)N2—C3—H3B109
C6—C5—C4133.0 (3)C4—C3—H3A109
C7—C6—C5134.0 (3)C4—C3—H3B109
C7—C6—C11119.4 (3)H3A—C3—H3B108
C5—C6—C11106.7 (3)C3—C4—H4A109
C8—C7—C6118.6 (3)C3—C4—H4B109
C7—C8—C9121.4 (3)C5—C4—H4A109
O1—C9—C10124.6 (3)C5—C4—H4B109
O1—C9—C8113.3 (3)H4A—C4—H4B108
C10—C9—C8122.1 (3)C6—C7—H7A121
C9—C10—C11116.3 (3)C8—C7—H7A121
N1—C11—C10128.9 (3)C7—C8—H8A119
N1—C11—C6108.8 (3)C9—C8—H8A119
C10—C11—C6122.2 (3)C9—C10—H10A122
C24—N3—C14108.3 (3)C11—C10—H10A122
C15—N4—C16123.4 (3)C2—C12—H12A110
C22—O2—C26117.5 (3)C2—C12—H12B109
C18—C14—N3109.5 (3)C2—C12—H12C109
C18—C14—C15123.8 (3)H12A—C12—H12B109
N3—C14—C15126.5 (3)H12A—C12—H12C109
N4—C15—C14117.1 (3)H12B—C12—H12C109
N4—C15—C25120.0 (3)O1—C13—H13A109
C14—C15—C25122.9 (3)O1—C13—H13B109
C17—C16—N4116.7 (4)O1—C13—H13C109
C16—C17—C18113.0 (3)H13A—C13—H13B109
C14—C18—C19107.3 (3)H13A—C13—H13C109
C14—C18—C17119.0 (3)H13B—C13—H13C110
C13—O1—C9—C8−170.7 (3)C3—C4—C5—C6−161.5 (3)
C13—O1—C9—C1010.7 (4)C1—C5—C6—C7−178.5 (3)
C11—N1—C1—C2177.5 (3)C1—C5—C6—C111.1 (3)
C11—N1—C1—C52.0 (3)C4—C5—C6—C78.2 (6)
C1—N1—C11—C6−1.3 (3)C4—C5—C6—C11−172.2 (3)
C1—N1—C11—C10178.6 (3)C5—C6—C7—C8179.2 (3)
C3—N2—C2—C1−5.5 (5)C11—C6—C7—C8−0.4 (4)
C3—N2—C2—C12175.5 (3)C5—C6—C11—N10.1 (3)
C2—N2—C3—C429.2 (5)C5—C6—C11—C10−179.83
N1—C1—C2—N2176.8 (3)C7—C6—C11—N1179.8 (3)
N1—C1—C2—C12−4.2 (6)C7—C6—C11—C10−0.2 (4)
C5—C1—C2—N2−8.3 (5)C6—C7—C8—C90.9 (5)
C5—C1—C2—C12170.7 (3)C7—C8—C9—O1−179.7 (3)
N1—C1—C5—C4172.5 (3)C7—C8—C9—C10−1.1 (5)
N1—C1—C5—C6−1.9 (3)O1—C9—C10—C11179.0 (3)
C2—C1—C5—C4−3.3 (5)C8—C9—C10—C110.5 (4)
C2—C1—C5—C6−177.7 (3)C9—C10—C11—N1−179.8 (3)
N2—C3—C4—C5−36.8 (4)C9—C10—C11—C60.1 (4)
C3—C4—C5—C125.9 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1A···Cl2i0.862.453.307 (3)171
N2—H2A···Cl1ii0.862.463.299 (3)166
N3—H3C···Cl30.862.333.183 (3)173
N4—H4C···Cl4iii0.862.443.287 (3)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯Cl2i0.862.453.307 (3)171
N2—H2A⋯Cl1ii0.862.463.299 (3)166
N3—H3C⋯Cl30.862.333.183 (3)173
N4—H4C⋯Cl4iii0.862.443.287 (3)170

Symmetry codes: (i) ; (ii) ; (iii) .

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