Literature DB >> 21580508

Bis[4-(2-carbamoylhydrazin-1-yl-idene-κN,O)-5-hydroxy-methyl-2-methyl-pyridinium-3-olato-κO]cobalt(II) dinitrate dihydrate.

Dragoslav Vidovic, Violeta Jevtovic.   

Abstract

The asymmetric unit of the title compound, [Co(C(9)H(12)N(4)O(3))(2)](NO(3))(2)·2H(2)O, consists of a discrete cationic [Co(PLSC)(2)](2+) complex unit [PLSC is 4-(2-carbamoylhydrazin-1-yl-idene)-5-hydroxy-methyl-2-methyl-pyridinium-3-ol-ato], two NO(3) (-) and two water mol-ecules. The two tridentate PLSC ligands of the cation are zwitterions related to each other by a non-crystallographic C(2) axis. The Co(II) ion is in a disorted octa-hedral coordination environment. The crystal structure is composed of alternating NO(3)/H(2)O and complex layers supported by extensive C-H⋯O, N-H⋯O and N-H⋯N hydrogen bonding.

Entities:  

Year:  2010        PMID: 21580508      PMCID: PMC2984000          DOI: 10.1107/S1600536810003570

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation and structure of other complexes incorporating PLSC ligands, see for example: Poleti et al. (2003 ▶); Leovac et al. (2007a ▶); Jacimovic et al. (2007 ▶); Knezevic et al. (2003 ▶). For the preparation and structures of similar complexes incorporating thio­semicarbazone (TSC) ligands, see: Belicchi Ferrari et al. (1998 ▶); Leovac et al. (2007b ▶). For background to the biological acitiviy of semicarbazones and thio­semicarbazones, see: West et al. (1991 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For the Chebychev weighting scheme, see: Prince (1982 ▶); Watkin (1994 ▶).

Experimental

Crystal data

[Co(C9H12N4O3)2](NO3)2·2H2O M = 667.41 Monoclinic, a = 11.0358 (1) Å b = 18.4859 (2) Å c = 13.8380 (1) Å β = 106.5705 (6)° V = 2705.80 (4) Å3 Z = 4 Mo Kα radiation μ = 0.72 mm−1 T = 150 K 0.38 × 0.08 × 0.03 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan DENZO/SCALEPACK (Otwinowski & Minor, 1997 ▶) T min = 0.92, T max = 0.98 38405 measured reflections 5212 independent reflections 4121 reflections with I > 2σ(I) R int = 0.056

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.041 S = 1.14 5212 reflections 389 parameters H-atom parameters constrained Δρmax = 0.56 e Å−3 Δρmin = −0.42 e Å−3 Data collection: COLLECT (Nonius, 2001 ▶); cell refinement: DENZO/SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO/SCALEPACK; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003 ▶); molecular graphics: CAMERON (Watkin et al., 1996 ▶) and SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: CRYSTALS. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810003570/lh2980sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810003570/lh2980Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C9H12N4O3)2](NO3)2·2H2OF(000) = 1380
Mr = 667.41Dx = 1.638 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 6300 reflections
a = 11.0358 (1) Åθ = 5–27°
b = 18.4859 (2) ŵ = 0.72 mm1
c = 13.8380 (1) ÅT = 150 K
β = 106.5705 (6)°Block, green
V = 2705.80 (4) Å30.38 × 0.08 × 0.03 mm
Z = 4
Nonius KappaCCD diffractometer4121 reflections with I > 2σ(I)
graphiteRint = 0.056
ω scansθmax = 27.5°, θmin = 5.1°
Absorption correction: multi-scan DENZO/SCALEPACK (Otwinowski & Minor, 1997)h = −14→14
Tmin = 0.92, Tmax = 0.98k = −23→23
38405 measured reflectionsl = −17→17
6133 independent reflections
Refinement on FHydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.033 Method, part 1, Chebychev polynomial, (Watkin, 1994, Prince, 1982) [weight] = 1.0/[A0*T0(x) + A1*T1(x) ··· + An-1]*Tn-1(x)] where Ai are the Chebychev coefficients listed below and x = F /Fmax Method = Robust Weighting (Prince, 1982) W = [weight] * [1-(deltaF/6*sigmaF)2]2 Ai are: 0.444 0.165 0.244
wR(F2) = 0.041(Δ/σ)max = 0.001
S = 1.14Δρmax = 0.56 e Å3
5212 reflectionsΔρmin = −0.42 e Å3
389 parametersExtinction correction: Larson (1970), Equation 22
0 restraintsExtinction coefficient: 80 (17)
Primary atom site location: structure-invariant direct methods
xyzUiso*/Ueq
Co10.97214 (3)0.479038 (15)0.21508 (2)0.0178
O21.10949 (15)0.41005 (8)0.18293 (11)0.0221
C31.1436 (2)0.35913 (12)0.24402 (16)0.0197
N41.22358 (19)0.30776 (11)0.23500 (15)0.0266
N51.09857 (18)0.35397 (10)0.32629 (14)0.0237
N61.01658 (17)0.40702 (10)0.33633 (13)0.0189
C70.9609 (2)0.39890 (12)0.40564 (16)0.0191
C80.8744 (2)0.45254 (11)0.42558 (16)0.0183
C90.8127 (2)0.43675 (12)0.50011 (16)0.0200
C100.8221 (2)0.36423 (12)0.55277 (17)0.0232
O110.94816 (15)0.34273 (8)0.60528 (11)0.0235
C120.7357 (2)0.48771 (12)0.52394 (17)0.0229
N130.71667 (17)0.55170 (10)0.47433 (14)0.0226
C140.7688 (2)0.56970 (12)0.40180 (16)0.0201
C150.85115 (19)0.52005 (12)0.37386 (15)0.0186
O160.90135 (15)0.54119 (8)0.30417 (12)0.0230
C170.7403 (2)0.64164 (12)0.35176 (18)0.0256
O181.11612 (15)0.55823 (9)0.23239 (11)0.0246
C191.1000 (2)0.59940 (12)0.15863 (16)0.0195
N200.99748 (17)0.59111 (10)0.07567 (14)0.0211
N210.91416 (17)0.53710 (9)0.08134 (13)0.0187
C220.8162 (2)0.52824 (12)0.00484 (16)0.0191
C230.7192 (2)0.47389 (12)0.00103 (16)0.0197
C240.7303 (2)0.42092 (12)0.07771 (17)0.0212
O250.82772 (15)0.41181 (8)0.15522 (12)0.0231
C260.6286 (2)0.37144 (13)0.06785 (18)0.0271
N270.52905 (19)0.37585 (12)−0.01369 (16)0.0308
C280.5171 (2)0.42374 (14)−0.08929 (18)0.0288
C290.6111 (2)0.47329 (13)−0.08471 (16)0.0225
C300.5993 (2)0.52333 (13)−0.17260 (16)0.0253
O310.49006 (17)0.50463 (10)−0.25181 (14)0.0361
C320.6314 (3)0.31578 (15)0.1459 (2)0.0380
N331.17911 (19)0.65324 (11)0.15436 (15)0.0266
O340.92284 (17)0.30192 (9)0.05176 (13)0.0298
O350.71622 (18)0.80490 (10)0.60566 (13)0.0335
N360.75110 (18)0.79336 (10)0.52883 (14)0.0225
O370.68648 (16)0.81769 (9)0.44575 (12)0.0291
O380.85047 (15)0.75880 (9)0.53404 (13)0.0298
O390.41254 (18)0.62823 (12)0.31113 (15)0.0467
O400.5576 (2)0.67311 (12)0.50711 (15)0.0484
N410.51580 (19)0.64733 (13)0.57582 (15)0.0311
O420.5441 (2)0.58280 (11)0.59929 (16)0.0453
O430.4521 (2)0.68264 (14)0.61762 (18)0.0566
H710.97740.35730.44600.0228*
H1010.77200.36640.60160.0279*
H1020.78760.32650.50160.0267*
H1210.69420.47910.57650.0442*
H1720.81360.67240.37470.0384*
H1730.71970.63600.27940.0387*
H2210.80660.5589−0.05020.0232*
H2710.46770.3462−0.01840.0362*
H3010.59180.5725−0.15070.0287*
H3020.67250.5194−0.19700.0290*
H3210.55520.28720.12700.0565*
H3220.63850.34000.20850.0563*
H3230.70390.28520.15370.0561*
H3250.98020.37700.64090.0357*
H110.45170.64150.37010.0682*
H170.48880.5336−0.29640.0494*
H230.66970.66430.36640.0389*
H450.44940.59120.29720.0683*
H70.94330.26090.07590.0456*
H190.90050.32560.09500.0455*
H3240.44440.4228−0.14440.0326*
H1310.67420.57910.48840.0126*
H21.11720.31780.36710.0294*
H31.25270.30790.18330.0331*
H41.24540.65820.20430.0307*
H51.16340.67950.09930.0304*
H61.24620.27400.28100.0331*
H90.98500.61860.02350.0258*
U11U22U33U12U13U23
Co10.02145 (15)0.01664 (15)0.01580 (14)0.00014 (12)0.00608 (10)0.00114 (12)
O20.0268 (8)0.0207 (8)0.0212 (8)0.0020 (6)0.0105 (6)0.0033 (6)
C30.0217 (11)0.0196 (10)0.0184 (10)−0.0021 (8)0.0069 (8)−0.0006 (8)
N40.0329 (11)0.0264 (10)0.0243 (10)0.0087 (9)0.0145 (8)0.0036 (8)
N50.0311 (10)0.0208 (9)0.0223 (9)0.0101 (8)0.0127 (8)0.0064 (8)
N60.0211 (9)0.0188 (9)0.0178 (9)0.0039 (7)0.0071 (7)0.0009 (7)
C70.0238 (11)0.0176 (10)0.0164 (10)0.0019 (8)0.0062 (8)0.0022 (8)
C80.0186 (10)0.0196 (10)0.0167 (10)−0.0011 (8)0.0050 (8)−0.0021 (8)
C90.0193 (10)0.0224 (11)0.0185 (10)−0.0027 (9)0.0057 (8)−0.0014 (9)
C100.0253 (11)0.0230 (11)0.0237 (11)−0.0030 (9)0.0107 (9)0.0013 (9)
O110.0276 (8)0.0198 (7)0.0226 (8)−0.0004 (6)0.0064 (6)−0.0011 (6)
C120.0226 (11)0.0268 (11)0.0211 (11)−0.0017 (9)0.0091 (9)0.0013 (9)
N130.0198 (9)0.0240 (9)0.0254 (10)0.0046 (8)0.0089 (8)−0.0033 (8)
C140.0191 (10)0.0209 (10)0.0191 (10)−0.0022 (8)0.0036 (8)−0.0036 (8)
C150.0195 (10)0.0194 (10)0.0167 (10)−0.0013 (9)0.0052 (8)−0.0021 (9)
O160.0298 (8)0.0180 (7)0.0241 (8)0.0012 (6)0.0126 (7)0.0028 (6)
C170.0278 (12)0.0213 (11)0.0279 (12)0.0040 (9)0.0083 (9)0.0009 (9)
O180.0267 (8)0.0256 (8)0.0206 (8)−0.0039 (7)0.0052 (6)0.0002 (7)
C190.0205 (10)0.0186 (10)0.0202 (10)−0.0003 (8)0.0069 (8)−0.0015 (8)
N200.0225 (9)0.0188 (9)0.0213 (9)−0.0057 (7)0.0052 (7)0.0038 (7)
N210.0206 (9)0.0167 (9)0.0203 (9)−0.0014 (7)0.0080 (7)−0.0002 (7)
C220.0209 (10)0.0203 (10)0.0173 (10)0.0004 (9)0.0073 (8)0.0014 (8)
C230.0200 (10)0.0202 (10)0.0195 (10)0.0006 (9)0.0069 (8)−0.0020 (9)
C240.0215 (11)0.0189 (10)0.0240 (11)−0.0003 (9)0.0078 (9)−0.0021 (9)
O250.0245 (8)0.0198 (8)0.0236 (8)−0.0008 (6)0.0045 (6)0.0030 (6)
C260.0262 (12)0.0242 (11)0.0318 (12)−0.0044 (10)0.0099 (10)0.0003 (10)
N270.0240 (10)0.0326 (11)0.0350 (11)−0.0106 (9)0.0074 (9)0.0000 (9)
C280.0256 (12)0.0330 (13)0.0260 (12)−0.0037 (10)0.0044 (10)−0.0007 (10)
C290.0209 (10)0.0261 (11)0.0213 (10)−0.0020 (9)0.0074 (9)−0.0039 (9)
C300.0243 (11)0.0282 (12)0.0196 (10)−0.0045 (10)0.0003 (9)−0.0004 (9)
O310.0329 (9)0.0399 (10)0.0267 (8)−0.0085 (8)−0.0057 (7)0.0034 (8)
C320.0332 (14)0.0317 (13)0.0471 (16)−0.0090 (11)0.0083 (12)0.0121 (12)
N330.0265 (10)0.0259 (10)0.0250 (10)−0.0084 (8)0.0035 (8)0.0008 (8)
O340.0397 (10)0.0207 (8)0.0301 (9)0.0015 (7)0.0116 (8)0.0012 (7)
O350.0469 (11)0.0349 (10)0.0232 (8)0.0128 (8)0.0175 (8)0.0032 (7)
N360.0275 (10)0.0190 (9)0.0227 (10)0.0016 (8)0.0101 (8)0.0030 (7)
O370.0326 (9)0.0322 (9)0.0234 (8)0.0104 (7)0.0094 (7)0.0086 (7)
O380.0265 (9)0.0322 (9)0.0323 (9)0.0096 (7)0.0111 (7)0.0091 (7)
O390.0335 (10)0.0616 (14)0.0390 (11)0.0035 (9)0.0009 (8)−0.0149 (10)
O400.0599 (13)0.0568 (13)0.0304 (10)−0.0153 (11)0.0161 (9)0.0023 (9)
N410.0272 (11)0.0426 (13)0.0229 (10)0.0009 (9)0.0060 (8)−0.0030 (9)
O420.0497 (12)0.0437 (12)0.0462 (12)0.0081 (10)0.0199 (10)0.0034 (9)
O430.0491 (13)0.0671 (15)0.0602 (14)0.0178 (11)0.0264 (11)−0.0122 (12)
Co1—O22.1228 (15)C19—N331.336 (3)
Co1—N62.0878 (18)N20—N211.375 (2)
Co1—O162.0000 (15)N20—H90.861
Co1—O182.1232 (16)N21—C221.290 (3)
Co1—N212.0763 (18)C22—C231.458 (3)
Co1—O252.0044 (16)C22—H2210.931
O2—C31.249 (3)C23—C241.423 (3)
C3—N41.327 (3)C23—C291.422 (3)
C3—N51.369 (3)C24—O251.295 (3)
N4—H30.864C24—C261.424 (3)
N4—H60.875C26—N271.334 (3)
N5—N61.368 (2)C26—C321.485 (3)
N5—H20.861N27—C281.348 (3)
N6—C71.287 (3)N27—H2710.859
C7—C81.457 (3)C28—C291.372 (3)
C7—H710.937C28—H3240.935
C8—C91.419 (3)C29—C301.504 (3)
C8—C151.425 (3)C30—O311.421 (3)
C9—C101.515 (3)C30—H3010.970
C9—C121.370 (3)C30—H3020.964
C10—O111.430 (3)O31—H170.814
C10—H1010.988C32—H3210.964
C10—H1020.990C32—H3220.959
O11—H3250.818C32—H3230.961
C12—N131.354 (3)N33—H40.856
C12—H1210.977N33—H50.878
N13—C141.334 (3)O34—H70.834
N13—H1310.753O34—H190.833
C14—C151.421 (3)O35—N361.248 (2)
C14—C171.491 (3)N36—O371.251 (2)
C15—O161.302 (3)N36—O381.253 (2)
C17—H1720.965O39—H110.844
C17—H1730.967O39—H450.847
C17—H230.955O40—N411.262 (3)
O18—C191.245 (3)N41—O421.252 (3)
C19—N201.371 (3)N41—O431.219 (3)
O2—Co1—N676.54 (6)C14—C17—H23111.7
O2—Co1—O16154.44 (7)H172—C17—H23109.2
N6—Co1—O1685.09 (7)H173—C17—H23107.6
O2—Co1—O1883.21 (6)Co1—O18—C19113.69 (14)
N6—Co1—O18110.63 (7)O18—C19—N20120.60 (19)
O16—Co1—O1886.89 (6)O18—C19—N33123.3 (2)
O2—Co1—N21100.41 (6)N20—C19—N33116.08 (19)
N6—Co1—N21171.12 (7)C19—N20—N21116.04 (17)
O16—Co1—N21100.21 (7)C19—N20—H9122.1
O18—Co1—N2176.98 (6)N21—N20—H9121.8
O2—Co1—O2594.13 (6)Co1—N21—N20112.65 (13)
N6—Co1—O2585.04 (7)Co1—N21—C22129.72 (15)
O16—Co1—O25101.92 (7)N20—N21—C22117.59 (18)
O18—Co1—O25162.82 (6)N21—C22—C23123.5 (2)
N21—Co1—O2586.88 (7)N21—C22—H221117.8
Co1—O2—C3113.95 (13)C23—C22—H221118.6
O2—C3—N4123.8 (2)C22—C23—C24122.8 (2)
O2—C3—N5120.31 (19)C22—C23—C29117.9 (2)
N4—C3—N5115.94 (19)C24—C23—C29119.3 (2)
C3—N4—H3119.3C23—C24—O25125.6 (2)
C3—N4—H6120.1C23—C24—C26118.2 (2)
H3—N4—H6120.6O25—C24—C26116.2 (2)
C3—N5—N6116.22 (18)Co1—O25—C24129.50 (14)
C3—N5—H2121.6C24—C26—N27118.6 (2)
N6—N5—H2122.1C24—C26—C32121.5 (2)
Co1—N6—N5112.70 (13)N27—C26—C32119.9 (2)
Co1—N6—C7128.37 (15)C26—N27—C28124.9 (2)
N5—N6—C7117.54 (18)C26—N27—H271117.8
N6—C7—C8122.68 (19)C28—N27—H271117.4
N6—C7—H71119.1N27—C28—C29119.8 (2)
C8—C7—H71118.2N27—C28—H324119.4
C7—C8—C9118.30 (19)C29—C28—H324120.8
C7—C8—C15122.33 (19)C23—C29—C28119.2 (2)
C9—C8—C15119.37 (19)C23—C29—C30121.9 (2)
C8—C9—C10123.38 (19)C28—C29—C30118.9 (2)
C8—C9—C12119.5 (2)C29—C30—O31109.48 (19)
C10—C9—C12117.05 (19)C29—C30—H301108.6
C9—C10—O11114.45 (18)O31—C30—H301109.9
C9—C10—H101108.5C29—C30—H302110.4
O11—C10—H101108.5O31—C30—H302108.9
C9—C10—H102108.7H301—C30—H302109.6
O11—C10—H102106.7C30—O31—H17104.6
H101—C10—H102110.0C26—C32—H321110.3
C10—O11—H325106.4C26—C32—H322108.3
C9—C12—N13119.7 (2)H321—C32—H322109.9
C9—C12—H121121.5C26—C32—H323109.5
N13—C12—H121118.8H321—C32—H323110.0
C12—N13—C14124.19 (19)H322—C32—H323108.8
C12—N13—H131118.4C19—N33—H4117.6
C14—N13—H131117.4C19—N33—H5118.7
N13—C14—C15119.4 (2)H4—N33—H5123.5
N13—C14—C17119.5 (2)H7—O34—H19107.0
C15—C14—C17121.12 (19)O35—N36—O37119.20 (19)
C8—C15—C14117.81 (19)O35—N36—O38121.04 (19)
C8—C15—O16125.55 (19)O37—N36—O38119.76 (18)
C14—C15—O16116.61 (19)H11—O39—H45108.0
Co1—O16—C15127.43 (14)O40—N41—O42115.9 (2)
C14—C17—H172109.0O40—N41—O43122.6 (2)
C14—C17—H173109.9O42—N41—O43121.4 (2)
H172—C17—H173109.3
D—H···AD—HH···AD···AD—H···A
C7—H71···O110.942.332.992 (3)127
C17—H172···O11i0.972.583.331 (3)135
C22—H221···O2ii0.932.353.153 (3)144
N27—H271···O35iii0.862.182.950 (3)149
N27—H271···N36iii0.862.573.400 (3)163
N27—H271···O37iii0.862.272.995 (3)142
C30—H301···O37iv0.972.493.369 (3)151
O11—H325···O16i0.822.002.783 (3)159
O11—H325···O18i0.822.593.132 (3)125
O39—H11···O400.842.012.851 (3)175
O31—H17···O42v0.811.952.718 (3)158
C17—H23···O400.962.593.391 (3)141
O39—H45···O31vi0.852.052.892 (3)171
O34—H7···O11vii0.831.962.767 (3)164
O34—H19···C240.832.543.149 (3)131
O34—H19···O250.832.062.852 (3)158
N13—H131···O400.752.222.963 (3)169
N13—H131···O420.752.382.971 (3)136
N5—H2···O38i0.861.932.789 (3)174
N4—H3···O37viii0.862.092.948 (3)174
N33—H4···O39ix0.862.082.893 (3)158
N33—H5···O34ii0.882.062.874 (3)153
N4—H6···O35i0.882.092.967 (3)174
N20—H9···O34ii0.862.212.946 (3)143
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H71⋯O110.942.332.992 (3)127
C17—H172⋯O11i0.972.583.331 (3)135
C22—H221⋯O2ii0.932.353.153 (3)144
N27—H271⋯O35iii0.862.182.950 (3)149
N27—H271⋯N36iii0.862.573.400 (3)163
N27—H271⋯O37iii0.862.272.995 (3)142
C30—H301⋯O37iv0.972.493.369 (3)151
O11—H325⋯O16i0.822.002.783 (3)159
O11—H325⋯O18i0.822.593.132 (3)125
O39—H11⋯O400.842.012.851 (3)175
O31—H17⋯O42v0.811.952.718 (3)158
C17—H23⋯O400.962.593.391 (3)141
O39—H45⋯O31vi0.852.052.892 (3)171
O34—H7⋯O11vii0.831.962.767 (3)164
O34—H19⋯O250.832.062.852 (3)158
N13—H131⋯O400.752.222.963 (3)169
N13—H131⋯O420.752.382.971 (3)136
N5—H2⋯O38i0.861.932.789 (3)174
N4—H3⋯O37viii0.862.092.948 (3)174
N33—H4⋯O39ix0.862.082.893 (3)158
N33—H5⋯O34ii0.882.062.874 (3)153
N4—H6⋯O35i0.882.092.967 (3)174
N20—H9⋯O34ii0.862.212.946 (3)143

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) ; (viii) ; (ix) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Dibromo(pyridoxal semicarbazone-kappa3N1,O3,O3')copper(II).

Authors:  Dejan Poleti; Ljiljana Karanović; Vukadin M Leovac; Violeta S Jevtović
Journal:  Acta Crystallogr C       Date:  2003-02-11       Impact factor: 1.172

  2 in total

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