Literature DB >> 21580484

Triaqua-(1,10-phenanthroline-2,9-dicarboxyl-ato)cobalt(II) dihydrate.

Zi-Fa Shi, Zhu-Qing Gao, Jin-Zhong Gu.   

Abstract

The title compound, [Co(C(14)H(6)N(2)O(4))(H(2)O)(3)]·2H(2)O, has two-fold crystallographic symmetry. The Co(II) atom is in a distorted penta-gonal-bipyramidal coordination environment with two N atoms and two O atoms from a tetradentate 1,10-phenanthroline-2,9-dicarboxyl-ate ligand and one O atom from a water mol-ecule forming the penta-gonal plane, and two O atoms from two water mol-ecules occupying axial positions. In the crystal, adjacent mol-ecules are linked by O-H⋯O hydrogen bonds, forming a three-dimensional network.

Entities:  

Year:  2010        PMID: 21580484      PMCID: PMC2983888          DOI: 10.1107/S1600536810007567

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures and properties of coordination compounds, see: Zhao et al. (2008 ▶); Poulsen et al. (2005 ▶). For the use of multi-carboxyl­ate and heterocyclic carboxylic acids in coordination chemistry, see: Luo et al. (2009 ▶); Han et al. (2009 ▶) and for the dicarboxyl­ate ligand H2PDA (H2PDA is 1,10-phenanthroline-2,9-dicarboxylic acid), see: Xie et al. (2005 ▶). For the isotypic structure [Mg(PDA)(H2O)3]·2H2O, see: Park et al. (2001 ▶). For the high affinity of the CoII ion to water mol­ecules, see: (Zhang & Chen (2009 ▶). For bond distances and angles in other seven-coordinated CoII complexes, see: Newkome et al. (1984 ▶); Rajput & Biradha (2007 ▶). For the synthesis of 1,10-phenanthroline-2,9-dicarboxylic acid, see: De Cian et al. (2007 ▶).

Experimental

Crystal data

[Co(C14H6N2O4)(H2O)3]·2H2O M = 415.22 Orthorhombic, a = 7.4093 (5) Å b = 18.9267 (17) Å c = 46.609 (4) Å V = 6536.1 (9) Å3 Z = 16 Mo Kα radiation μ = 1.11 mm−1 T = 296 K 0.20 × 0.19 × 0.17 mm

Data collection

Bruker SMART CCD diffractometer 9724 measured reflections 1877 independent reflections 1520 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.098 S = 1.06 1877 reflections 132 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.96 e Å−3 Δρmin = −0.46 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810007567/hg2639sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810007567/hg2639Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C14H6N2O4)(H2O)3]·2H2OF(000) = 3408
Mr = 415.22Dx = 1.688 Mg m3
Orthorhombic, FdddMo Kα radiation, λ = 0.71073 Å
Hall symbol: -F 2uv 2vwCell parameters from 2624 reflections
a = 7.4093 (5) Åθ = 3.0–25.2°
b = 18.9267 (17) ŵ = 1.11 mm1
c = 46.609 (4) ÅT = 296 K
V = 6536.1 (9) Å3Block, yellow
Z = 160.20 × 0.19 × 0.17 mm
Bruker APEXII CCD diffractometer1520 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.032
graphiteθmax = 27.5°, θmin = 1.8°
φ and ω scansh = −9→9
9724 measured reflectionsk = −24→23
1877 independent reflectionsl = −45→60
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.098H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0494P)2 + 16.2882P] where P = (Fo2 + 2Fc2)/3
1877 reflections(Δ/σ)max = 0.001
132 parametersΔρmax = 0.96 e Å3
2 restraintsΔρmin = −0.46 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Co10.87500.87500.575281 (8)0.02703 (15)
C10.5006 (3)0.79758 (12)0.56914 (5)0.0303 (5)
C20.5619 (3)0.81188 (11)0.53888 (5)0.0286 (5)
C30.4668 (3)0.79146 (13)0.51428 (5)0.0369 (5)
H30.35730.76780.51600.044*
C40.5356 (4)0.80639 (13)0.48763 (5)0.0403 (6)
H40.47230.79360.47120.048*
C50.7025 (3)0.84111 (12)0.48536 (5)0.0336 (5)
C60.7884 (3)0.85853 (11)0.51113 (4)0.0283 (5)
C70.7938 (4)0.85890 (13)0.45911 (5)0.0426 (6)
H70.73940.84790.44170.051*
H3A0.953 (3)0.8937 (8)0.6302 (4)0.063 (10)*
H5A0.86920.72420.63860.075*
H5B0.85920.65180.62270.075*0.50
H5B'0.71380.70610.62210.075*0.50
H4A1.088 (5)0.7728 (17)0.5770 (7)0.049 (10)*
H4B0.955 (5)0.7546 (18)0.5909 (8)0.060 (11)*
N60.7184 (2)0.84503 (10)0.53724 (4)0.0274 (4)
O10.6029 (2)0.82142 (9)0.58824 (4)0.0380 (4)
O20.3589 (2)0.76361 (11)0.57280 (4)0.0446 (5)
O30.87500.87500.61974 (5)0.0459 (7)
O40.9892 (3)0.77204 (10)0.57658 (4)0.0359 (4)
O50.8336 (4)0.69890 (11)0.62306 (5)0.0670 (7)
U11U22U33U12U13U23
Co10.0278 (3)0.0337 (3)0.0196 (2)−0.00067 (18)0.0000.000
C10.0231 (11)0.0333 (12)0.0344 (12)0.0020 (9)0.0013 (9)−0.0046 (9)
C20.0256 (11)0.0298 (11)0.0305 (11)0.0043 (9)−0.0041 (9)−0.0060 (8)
C30.0325 (13)0.0401 (13)0.0382 (13)−0.0006 (10)−0.0095 (10)−0.0084 (10)
C40.0463 (15)0.0418 (14)0.0328 (13)0.0055 (11)−0.0153 (11)−0.0087 (10)
C50.0438 (14)0.0321 (12)0.0248 (11)0.0101 (11)−0.0069 (9)−0.0048 (9)
C60.0313 (12)0.0296 (11)0.0239 (10)0.0057 (9)−0.0010 (9)−0.0015 (8)
C70.0637 (17)0.0412 (14)0.0228 (11)0.0069 (12)−0.0065 (11)−0.0037 (9)
N60.0261 (9)0.0320 (9)0.0241 (9)0.0013 (8)−0.0014 (7)−0.0023 (7)
O10.0327 (9)0.0544 (10)0.0268 (8)−0.0075 (8)0.0024 (7)−0.0060 (7)
O20.0304 (10)0.0550 (11)0.0483 (11)−0.0086 (8)0.0052 (8)−0.0053 (8)
O30.0490 (16)0.0680 (17)0.0206 (11)−0.0285 (14)0.0000.000
O40.0312 (11)0.0403 (10)0.0363 (10)0.0012 (8)−0.0012 (8)0.0004 (8)
O50.1009 (19)0.0418 (11)0.0582 (13)−0.0027 (12)0.0008 (13)−0.0004 (10)
Co1—O32.072 (2)C4—C51.404 (4)
Co1—O42.1254 (19)C4—H40.9300
Co1—O4i2.1254 (19)C5—C61.399 (3)
Co1—N6i2.1936 (18)C5—C71.438 (3)
Co1—N62.1936 (18)C6—N61.348 (3)
Co1—O12.3364 (16)C6—C6i1.426 (5)
Co1—O1i2.3364 (16)C7—C7i1.349 (6)
C1—O21.243 (3)C7—H70.9300
C1—O11.253 (3)O3—H3A0.837 (17)
C1—C21.506 (3)O4—H4A0.74 (4)
C2—N61.320 (3)O4—H4B0.79 (4)
C2—C31.400 (3)O5—H5A0.9066
C3—C41.372 (4)O5—H5B0.9119
C3—H30.9300O5—H5B'0.8988
O3—Co1—O488.37 (5)C4—C3—C2119.8 (2)
O3—Co1—O4i88.37 (5)C4—C3—H3120.1
O4—Co1—O4i176.75 (11)C2—C3—H3120.1
O3—Co1—N6i143.92 (5)C3—C4—C5119.5 (2)
O4—Co1—N6i92.83 (8)C3—C4—H4120.3
O4i—Co1—N6i89.80 (7)C5—C4—H4120.3
O3—Co1—N6143.92 (5)C6—C5—C4116.5 (2)
O4—Co1—N689.80 (7)C6—C5—C7117.5 (2)
O4i—Co1—N692.83 (8)C4—C5—C7126.0 (2)
N6i—Co1—N672.16 (10)N6—C6—C5123.7 (2)
O3—Co1—O175.02 (4)N6—C6—C6i115.43 (12)
O4—Co1—O186.46 (8)C5—C6—C6i120.83 (14)
O4i—Co1—O192.69 (7)C7i—C7—C5121.69 (15)
N6i—Co1—O1141.06 (6)C7i—C7—H7119.2
N6—Co1—O168.91 (6)C5—C7—H7119.2
O3—Co1—O1i75.02 (4)C2—N6—C6118.72 (18)
O4—Co1—O1i92.69 (7)C2—N6—Co1122.73 (14)
O4i—Co1—O1i86.46 (8)C6—N6—Co1118.50 (15)
N6i—Co1—O1i68.91 (6)C1—O1—Co1119.62 (15)
N6—Co1—O1i141.06 (6)Co1—O3—H3A125.6 (15)
O1—Co1—O1i150.03 (8)Co1—O4—H4A112 (3)
O2—C1—O1126.8 (2)Co1—O4—H4B106 (2)
O2—C1—C2118.4 (2)H4A—O4—H4B108 (3)
O1—C1—C2114.7 (2)H5A—O5—H5B118.1
N6—C2—C3121.7 (2)H5A—O5—H5B'104.2
N6—C2—C1113.83 (18)H5B—O5—H5B'110.7
C3—C2—C1124.5 (2)
O2—C1—C2—N6−176.6 (2)C6i—C6—N6—Co10.2 (3)
O1—C1—C2—N62.6 (3)O3—Co1—N6—C2−2.8 (2)
O2—C1—C2—C32.2 (3)O4—Co1—N6—C284.14 (17)
O1—C1—C2—C3−178.6 (2)O4i—Co1—N6—C2−93.94 (17)
N6—C2—C3—C4−0.5 (4)N6i—Co1—N6—C2177.2 (2)
C1—C2—C3—C4−179.2 (2)O1—Co1—N6—C2−2.14 (16)
C2—C3—C4—C51.0 (4)O1i—Co1—N6—C2178.19 (14)
C3—C4—C5—C6−0.1 (3)O3—Co1—N6—C6179.93 (11)
C3—C4—C5—C7178.5 (2)O4—Co1—N6—C6−93.11 (16)
C4—C5—C6—N6−1.3 (3)O4i—Co1—N6—C688.81 (16)
C7—C5—C6—N6179.9 (2)N6i—Co1—N6—C6−0.07 (11)
C4—C5—C6—C6i177.6 (2)O1—Co1—N6—C6−179.40 (17)
C7—C5—C6—C6i−1.2 (4)O1i—Co1—N6—C60.9 (2)
C6—C5—C7—C7i0.1 (4)O2—C1—O1—Co1174.59 (19)
C4—C5—C7—C7i−178.6 (3)C2—C1—O1—Co1−4.5 (3)
C3—C2—N6—C6−0.9 (3)O3—Co1—O1—C1−176.70 (18)
C1—C2—N6—C6178.00 (18)O4—Co1—O1—C1−87.44 (18)
C3—C2—N6—Co1−178.11 (16)O4i—Co1—O1—C195.71 (18)
C1—C2—N6—Co10.7 (3)N6i—Co1—O1—C12.7 (2)
C5—C6—N6—C21.8 (3)N6—Co1—O1—C13.71 (16)
C6i—C6—N6—C2−177.2 (2)O1i—Co1—O1—C1−176.70 (18)
C5—C6—N6—Co1179.17 (16)
D—H···AD—HH···AD···AD—H···A
O3—H3A···O1ii0.837 (17)1.957 (16)2.778 (2)167 (2)
O5—H5A···O2iii0.911.952.837 (3)164
O5—H5B···O5iv0.911.932.803 (4)161
O5—H5B'···O5iii0.902.223.096 (6)165
O4—H4A···O2v0.74 (4)2.02 (4)2.750 (3)171 (4)
O4—H4B···O50.79 (4)2.04 (4)2.818 (3)169 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3A⋯O1i0.837 (17)1.957 (16)2.778 (2)167 (2)
O5—H5A⋯O2ii0.911.952.837 (3)164
O5—H5B⋯O5iii0.911.932.803 (4)161
O5—H5B′⋯O5ii0.902.223.096 (6)165
O4—H4A⋯O2iv0.74 (4)2.02 (4)2.750 (3)171 (4)
O4—H4B⋯O50.79 (4)2.04 (4)2.818 (3)169 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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