Literature DB >> 21580483

Bis(4,4'-bipyrid-yl)bis{2-[4,6-bis-(carboxy-methyl-sulfan-yl)-1,3,5-triazin-2-ylsulfan-yl]acetato}zinc(II).

Suna Wang1, Yan Yang, Dacheng Li, Jianmin Dou, Daqi Wang.   

Abstract

In the title compound, [Zn(C(9)H(8)N(3)O(6)S(3))(2)(C(10)H(8)N(2))(2)], the central Zn(II) ion, situated on a center of inversion, adopts an octa-hedral geometry coordinated by four O atoms from two carboxyl-ate groups and two carboxylic groups of two symmetry-related TTTA ligands and two N atoms from two bpy mol-ecules {TTTA is 2,2',2''-[1,3,5-triazine-2,4,6-triyltris(sulfanedi-yl)]triacetic acid and bpy is 4,4'-bipyridine}. These mononuclear units are connected through complementary O-H⋯X hydrogen bonds, as well as through weak C-H⋯X (X = O and N) inter-actions, resulting in a three-dimensional supra-molecular architecture.

Entities:  

Year:  2010        PMID: 21580483      PMCID: PMC2983928          DOI: 10.1107/S160053681000735X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For crystal engineering of carboxyl­ates, see: Moulton & Zaworotko (2001 ▶); Rao et al. (2004 ▶); Ferey et al. (2005 ▶). For inter­actions involved in the self-assembly process, see: Braga & Grepioni (2000 ▶); Roesky & Andruh (2003 ▶); Chen et al. (2009 ▶). For our work on the coordination chemistry of semirigid polycarboxyl­ate ligands with functional groups introduced between the aromatic ring and carboxyl­ate groups, see: Wang et al. (2007 ▶); Hong et al. (2005 ▶); Sun et al. (2007 ▶).

Experimental

Crystal data

[Zn(C9H8N3O6S3)2(C10H8N2)2] M = 1078.47 Triclinic, a = 8.6025 (7) Å b = 8.7606 (7) Å c = 15.3187 (12) Å α = 99.518 (1)° β = 105.802 (2)° γ = 98.805 (1)° V = 1071.41 (15) Å3 Z = 1 Mo Kα radiation μ = 0.94 mm−1 T = 293 K 0.28 × 0.24 × 0.23 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.81, T max = 0.84 5465 measured reflections 3745 independent reflections 3103 reflections with I > 2σ(I) R int = 0.067

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.116 S = 1.05 3745 reflections 306 parameters H-atom parameters constrained Δρmax = 0.55 e Å−3 Δρmin = −0.63 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681000735X/rn2067sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681000735X/rn2067Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C9H8N3O6S3)2(C10H8N2)2]Z = 1
Mr = 1078.47F(000) = 552
Triclinic, P1Dx = 1.671 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.6025 (7) ÅCell parameters from 2836 reflections
b = 8.7606 (7) Åθ = 2.5–28.1°
c = 15.3187 (12) ŵ = 0.94 mm1
α = 99.518 (1)°T = 293 K
β = 105.802 (2)°Block, colorless
γ = 98.805 (1)°0.28 × 0.24 × 0.23 mm
V = 1071.41 (15) Å3
Bruker SMART APEX CCD diffractometer3745 independent reflections
Radiation source: fine-focus sealed tube3103 reflections with I > 2σ(I)
graphiteRint = 0.067
phi and ω scansθmax = 25.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −8→10
Tmin = 0.81, Tmax = 0.84k = −10→9
5465 measured reflectionsl = −18→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.116H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0632P)2] where P = (Fo2 + 2Fc2)/3
3745 reflections(Δ/σ)max = 0.001
306 parametersΔρmax = 0.55 e Å3
0 restraintsΔρmin = −0.63 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.50000.00000.50000.02725 (17)
N10.1818 (3)−0.1424 (3)0.74960 (17)0.0324 (6)
N20.4260 (3)−0.1972 (3)0.71830 (15)0.0265 (5)
N30.4458 (3)−0.0022 (3)0.85212 (16)0.0276 (6)
N40.3822 (3)0.1179 (3)0.58899 (16)0.0260 (5)
N50.0151 (3)0.5510 (3)0.88027 (19)0.0402 (7)
O10.3126 (3)−0.2111 (2)0.48345 (15)0.0365 (5)
O20.3316 (3)−0.4383 (2)0.40496 (14)0.0368 (5)
H20.3378−0.52710.41420.044*
O30.6664 (2)−0.0338 (2)0.62169 (13)0.0291 (5)
O40.6623 (3)−0.2886 (2)0.57706 (14)0.0352 (5)
O50.1025 (3)0.2799 (3)1.01154 (16)0.0456 (6)
H50.07130.33891.04760.055*
O60.3494 (3)0.4151 (3)1.09911 (19)0.0634 (8)
S10.13117 (9)−0.35869 (9)0.60274 (5)0.0338 (2)
S20.72472 (9)−0.03437 (9)0.82517 (5)0.0308 (2)
S30.17169 (10)0.05612 (10)0.89085 (6)0.0401 (2)
C10.2626 (3)−0.2188 (3)0.69989 (19)0.0252 (6)
C20.5103 (3)−0.0856 (3)0.79407 (19)0.0247 (6)
C30.2811 (4)−0.0367 (3)0.8256 (2)0.0287 (7)
C40.2717 (4)−0.4370 (3)0.5489 (2)0.0267 (6)
H4A0.3749−0.43000.59650.032*
H4B0.2259−0.54810.52050.032*
C50.3071 (4)−0.3530 (3)0.4759 (2)0.0272 (6)
C60.7620 (4)−0.1775 (3)0.73879 (19)0.0282 (7)
H6A0.8804−0.16750.75210.034*
H6B0.7170−0.28240.74470.034*
C70.6901 (3)−0.1647 (3)0.63890 (19)0.0250 (6)
C80.3335 (4)0.2042 (4)0.9770 (2)0.0325 (7)
H8A0.40750.15321.01670.039*
H8B0.39680.26620.94650.039*
C90.2604 (4)0.3118 (4)1.0352 (2)0.0346 (7)
C100.2189 (4)0.1151 (4)0.5617 (2)0.0334 (7)
H100.15550.05620.50310.040*
C110.1411 (4)0.1955 (4)0.6167 (2)0.0329 (7)
H110.02780.18960.59500.039*
C120.2330 (4)0.2856 (3)0.7048 (2)0.0269 (6)
C130.4010 (4)0.2880 (3)0.7317 (2)0.0309 (7)
H130.46810.34700.78960.037*
C140.4687 (4)0.2032 (3)0.6729 (2)0.0297 (7)
H140.58150.20610.69320.036*
C150.1554 (4)0.3774 (3)0.7653 (2)0.0277 (6)
C16−0.0110 (4)0.3372 (4)0.7560 (2)0.0388 (8)
H16−0.07840.25030.71100.047*
C17−0.0762 (4)0.4272 (4)0.8142 (2)0.0447 (9)
H17−0.18850.39990.80680.054*
C180.1757 (4)0.5904 (4)0.8904 (2)0.0383 (8)
H180.24010.67700.93670.046*
C190.2497 (4)0.5074 (4)0.8345 (2)0.0352 (7)
H190.36220.53820.84310.042*
U11U22U33U12U13U23
Zn10.0323 (3)0.0258 (3)0.0252 (3)0.0085 (2)0.0130 (2)0.0003 (2)
N10.0275 (14)0.0362 (14)0.0309 (14)0.0065 (11)0.0110 (11)−0.0026 (11)
N20.0244 (13)0.0290 (13)0.0244 (13)0.0052 (11)0.0077 (10)0.0012 (11)
N30.0256 (13)0.0322 (13)0.0241 (13)0.0078 (11)0.0089 (10)−0.0001 (11)
N40.0286 (13)0.0230 (12)0.0266 (13)0.0066 (10)0.0109 (11)0.0013 (10)
N50.0369 (16)0.0439 (16)0.0404 (16)0.0147 (13)0.0159 (13)−0.0018 (13)
O10.0389 (13)0.0255 (12)0.0460 (13)0.0062 (9)0.0162 (10)0.0056 (10)
O20.0511 (14)0.0299 (11)0.0338 (12)0.0098 (11)0.0192 (10)0.0071 (10)
O30.0352 (12)0.0253 (10)0.0276 (11)0.0089 (9)0.0110 (9)0.0028 (9)
O40.0466 (14)0.0284 (11)0.0301 (12)0.0123 (10)0.0124 (10)0.0000 (9)
O50.0359 (14)0.0519 (15)0.0437 (14)0.0148 (11)0.0142 (11)−0.0129 (11)
O60.0462 (16)0.0648 (17)0.0614 (18)0.0071 (14)0.0157 (13)−0.0295 (14)
S10.0239 (4)0.0386 (5)0.0307 (4)−0.0020 (3)0.0090 (3)−0.0085 (3)
S20.0220 (4)0.0406 (5)0.0236 (4)0.0047 (3)0.0050 (3)−0.0051 (3)
S30.0272 (4)0.0481 (5)0.0387 (5)0.0078 (4)0.0134 (4)−0.0135 (4)
C10.0253 (15)0.0254 (15)0.0257 (15)0.0063 (12)0.0099 (12)0.0032 (12)
C20.0250 (15)0.0265 (15)0.0222 (14)0.0062 (12)0.0070 (12)0.0034 (12)
C30.0281 (16)0.0310 (16)0.0275 (16)0.0085 (13)0.0107 (13)0.0022 (13)
C40.0273 (15)0.0241 (14)0.0272 (15)0.0048 (12)0.0096 (12)−0.0005 (12)
C50.0266 (16)0.0238 (16)0.0294 (16)0.0050 (12)0.0085 (12)0.0013 (12)
C60.0248 (15)0.0309 (16)0.0289 (16)0.0088 (13)0.0090 (12)0.0023 (13)
C70.0232 (15)0.0267 (15)0.0259 (15)0.0057 (12)0.0113 (12)0.0013 (12)
C80.0281 (16)0.0381 (17)0.0300 (16)0.0106 (14)0.0094 (13)−0.0002 (14)
C90.0316 (18)0.0373 (18)0.0320 (17)0.0084 (14)0.0100 (14)−0.0018 (14)
C100.0335 (17)0.0319 (16)0.0318 (17)0.0054 (14)0.0117 (14)−0.0030 (13)
C110.0290 (16)0.0347 (17)0.0329 (17)0.0068 (13)0.0112 (13)−0.0013 (14)
C120.0293 (16)0.0259 (15)0.0274 (15)0.0074 (12)0.0118 (12)0.0044 (12)
C130.0308 (17)0.0325 (16)0.0279 (16)0.0080 (14)0.0098 (13)−0.0003 (13)
C140.0293 (16)0.0312 (16)0.0290 (16)0.0094 (13)0.0097 (13)0.0033 (13)
C150.0287 (16)0.0298 (15)0.0258 (15)0.0099 (13)0.0099 (12)0.0034 (12)
C160.0355 (18)0.0409 (19)0.0383 (19)0.0095 (15)0.0137 (15)−0.0015 (15)
C170.0361 (19)0.052 (2)0.046 (2)0.0134 (17)0.0169 (16)−0.0018 (17)
C180.0390 (19)0.0377 (18)0.0368 (18)0.0103 (15)0.0142 (15)−0.0026 (15)
C190.0319 (17)0.0356 (17)0.0378 (18)0.0089 (14)0.0148 (14)−0.0018 (14)
Zn1—O3i2.1145 (19)S3—C31.739 (3)
Zn1—O32.1145 (19)S3—C81.800 (3)
Zn1—N4i2.135 (2)C4—C51.507 (4)
Zn1—N42.135 (2)C4—H4A0.9700
Zn1—O12.189 (2)C4—H4B0.9700
Zn1—O1i2.189 (2)C6—C71.516 (4)
N1—C11.331 (4)C6—H6A0.9700
N1—C31.342 (4)C6—H6B0.9700
N2—C11.333 (4)C8—C91.513 (4)
N2—C21.334 (3)C8—H8A0.9700
N3—C31.334 (4)C8—H8B0.9700
N3—C21.346 (4)C10—C111.382 (4)
N4—C141.325 (4)C10—H100.9300
N4—C101.347 (4)C11—C121.394 (4)
N5—C171.327 (4)C11—H110.9300
N5—C181.331 (4)C12—C131.386 (4)
O1—C51.222 (3)C12—C151.486 (4)
O2—C51.299 (3)C13—C141.379 (4)
O2—H20.8200C13—H130.9300
O3—C71.252 (3)C14—H140.9300
O4—C71.261 (3)C15—C161.383 (4)
O5—C91.279 (4)C15—C191.388 (4)
O5—H50.8200C16—C171.380 (4)
O6—C91.204 (4)C16—H160.9300
S1—C11.747 (3)C17—H170.9300
S1—C41.795 (3)C18—C191.379 (4)
S2—C21.740 (3)C18—H180.9300
S2—C61.797 (3)C19—H190.9300
O3i—Zn1—O3180.00 (7)C7—C6—H6A108.4
O3i—Zn1—N4i86.91 (8)S2—C6—H6A108.4
O3—Zn1—N4i93.09 (8)C7—C6—H6B108.4
O3i—Zn1—N493.09 (8)S2—C6—H6B108.4
O3—Zn1—N486.91 (8)H6A—C6—H6B107.4
N4i—Zn1—N4180.00 (9)O3—C7—O4123.7 (3)
O3i—Zn1—O184.73 (8)O3—C7—C6119.5 (2)
O3—Zn1—O195.27 (8)O4—C7—C6116.8 (2)
N4i—Zn1—O194.10 (8)C9—C8—S3110.2 (2)
N4—Zn1—O185.90 (8)C9—C8—H8A109.6
O3i—Zn1—O1i95.27 (8)S3—C8—H8A109.6
O3—Zn1—O1i84.73 (8)C9—C8—H8B109.6
N4i—Zn1—O1i85.90 (8)S3—C8—H8B109.6
N4—Zn1—O1i94.10 (8)H8A—C8—H8B108.1
O1—Zn1—O1i180.00 (7)O6—C9—O5125.3 (3)
C1—N1—C3113.8 (3)O6—C9—C8120.2 (3)
C1—N2—C2113.8 (2)O5—C9—C8114.4 (3)
C3—N3—C2113.4 (2)N4—C10—C11123.2 (3)
C14—N4—C10116.8 (3)N4—C10—H10118.4
C14—N4—Zn1121.0 (2)C11—C10—H10118.4
C10—N4—Zn1122.14 (19)C10—C11—C12119.7 (3)
C17—N5—C18118.6 (3)C10—C11—H11120.1
C5—O1—Zn1136.6 (2)C12—C11—H11120.1
C5—O2—H2109.5C13—C12—C11116.5 (3)
C7—O3—Zn1125.67 (18)C13—C12—C15121.9 (3)
C9—O5—H5109.5C11—C12—C15121.7 (3)
C1—S1—C4103.09 (14)C14—C13—C12120.1 (3)
C2—S2—C6100.14 (13)C14—C13—H13119.9
C3—S3—C8101.90 (14)C12—C13—H13119.9
N1—C1—N2126.4 (3)N4—C14—C13123.7 (3)
N1—C1—S1113.1 (2)N4—C14—H14118.1
N2—C1—S1120.6 (2)C13—C14—H14118.1
N2—C2—N3126.3 (3)C16—C15—C19117.5 (3)
N2—C2—S2120.1 (2)C16—C15—C12122.0 (3)
N3—C2—S2113.6 (2)C19—C15—C12120.5 (3)
N3—C3—N1126.3 (3)C17—C16—C15119.4 (3)
N3—C3—S3121.1 (2)C17—C16—H16120.3
N1—C3—S3112.6 (2)C15—C16—H16120.3
C5—C4—S1113.8 (2)N5—C17—C16122.6 (3)
C5—C4—H4A108.8N5—C17—H17118.7
S1—C4—H4A108.8C16—C17—H17118.7
C5—C4—H4B108.8N5—C18—C19122.3 (3)
S1—C4—H4B108.8N5—C18—H18118.9
H4A—C4—H4B107.7C19—C18—H18118.9
O1—C5—O2121.7 (3)C18—C19—C15119.6 (3)
O1—C5—C4121.3 (3)C18—C19—H19120.2
O2—C5—C4116.9 (2)C15—C19—H19120.2
C7—C6—S2115.7 (2)
D—H···AD—HH···AD···AD—H···A
O2—H2···O4ii0.821.642.460 (3)175
O5—H5···N5iii0.821.742.554 (3)174
C13—H13···O6iv0.932.473.335 (4)156
C19—H19···O6iv0.932.343.245 (4)164
C6—H6A···N1v0.972.583.533 (4)168
Table 1

Selected bond lengths (Å)

Zn1—O32.1145 (19)
Zn1—N42.135 (2)
Zn1—O12.189 (2)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯O4i0.821.642.460 (3)175
O5—H5⋯N5ii0.821.742.554 (3)174
C13—H13⋯O6iii0.932.473.335 (4)156
C19—H19⋯O6iii0.932.343.245 (4)164
C6—H6A⋯N1iv0.972.583.533 (4)168

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  6 in total

1.  From molecules to crystal engineering: supramolecular isomerism and polymorphism in network solids.

Authors:  B Moulton; M J Zaworotko
Journal:  Chem Rev       Date:  2001-06       Impact factor: 60.622

Review 2.  Intermolecular interactions in nonorganic crystal engineering.

Authors:  D Braga; F Grepioni
Journal:  Acc Chem Res       Date:  2000-09       Impact factor: 22.384

3.  Crystallized frameworks with giant pores: are there limits to the possible?

Authors:  Gérard Férey; Caroline Mellot-Draznieks; Christian Serre; Franck Millange
Journal:  Acc Chem Res       Date:  2005-04       Impact factor: 22.384

4.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

5.  Unprecedented 4(2)6(4) topological 2-D rare-earth coordination polymers from a flexible tripodal acid with additional amide groups.

Authors:  Ran Sun; Suna Wang; Hang Xing; Junfeng Bai; Yizhi Li; Yi Pan; Xiaozeng You
Journal:  Inorg Chem       Date:  2007-09-12       Impact factor: 5.165

6.  Metal carboxylates with open architectures.

Authors:  C N R Rao; Srinivasan Natarajan; R Vaidhyanathan
Journal:  Angew Chem Int Ed Engl       Date:  2004-03-12       Impact factor: 15.336

  6 in total

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